Miyakogusa Predicted Gene

Lj1g3v3458540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3458540.1 Non Chatacterized Hit- tr|G7KUG0|G7KUG0_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,60.26,4e-18,
,CUFF.30762.1
         (109 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42260.1 | Symbols: UVI4, PYM | uv-b-insensitive 4 | chr2:176...    86   5e-18
AT3G57860.1 | Symbols: UVI4-LIKE, OSD1 | UV-B-insensitive 4-like...    75   7e-15

>AT2G42260.1 | Symbols: UVI4, PYM | uv-b-insensitive 4 |
           chr2:17602240-17603283 REVERSE LENGTH=259
          Length = 259

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 66/97 (68%), Gaps = 3/97 (3%)

Query: 16  PLDRSVVEHRCCDDSSSVSVKIR---TPAGSKVPKIVLNFADEEEGELELLTPQKKLLDS 72
           PL  + +EH     +   S+  +    P+ +KV +I+L+   E  GE + LTP+KKLL+S
Sbjct: 163 PLSGAHLEHDYSMVTPGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNS 222

Query: 73  IDMVEKLVRESLQKLKQSPSGRKAEREKRVRTLMSMR 109
           ID VEK+V E +QK+K +PS ++AEREKRVRTLMSMR
Sbjct: 223 IDKVEKVVMEEIQKMKSTPSAKRAEREKRVRTLMSMR 259


>AT3G57860.1 | Symbols: UVI4-LIKE, OSD1 | UV-B-insensitive 4-like |
           chr3:21426733-21427821 FORWARD LENGTH=243
          Length = 243

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 60/91 (65%), Gaps = 4/91 (4%)

Query: 23  EHRCCDDSSSVSVKIR---TPAGSKVPKIVLNFADE-EEGELELLTPQKKLLDSIDMVEK 78
           EH+C   +   SV  +    P+ +KV K++L+   E  E E   +TP+KKLL+SID VEK
Sbjct: 153 EHKCSMVTPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEK 212

Query: 79  LVRESLQKLKQSPSGRKAEREKRVRTLMSMR 109
           +V   +QKLK +P  ++ EREKRVRTLM+MR
Sbjct: 213 IVMAEIQKLKSTPQAKREEREKRVRTLMTMR 243