Miyakogusa Predicted Gene

Lj1g3v3458500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3458500.1 tr|A9T4N0|A9T4N0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_88027
,38.58,3e-19,EF-hand,NULL; EF_HAND_2,EF-HAND 2; no
description,EF-hand-like domain; SUBFAMILY NOT NAMED,NULL;
EF-,CUFF.30759.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44310.1 | Symbols:  | Calcium-binding EF-hand family protein...   132   7e-32
AT1G54530.1 | Symbols:  | Calcium-binding EF hand family protein...    57   3e-09
AT4G38810.2 | Symbols:  | Calcium-binding EF-hand family protein...    50   7e-07

>AT2G44310.1 | Symbols:  | Calcium-binding EF-hand family protein |
           chr2:18309285-18309713 FORWARD LENGTH=142
          Length = 142

 Score =  132 bits (332), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 65/137 (47%), Positives = 99/137 (72%), Gaps = 2/137 (1%)

Query: 1   MSVEILDGATIVNFLEDEEAFNISVCNRFALLDTNKDGLLSYEEMLKELQCLRVLETHFG 60
           M V ++DG+T+ +F++DEE F  SV  RFA LD NKDG+LS  E+ K  + +R+LE+HFG
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  IDVKPDPDELGRVYKSLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPVQMAL-- 118
           +DV    DEL  +Y S+F +FD + +GSVDLEEF+ E ++++LA+ADG+G  P+ M L  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 119 EEDSILKRAVERECNKV 135
           ++D+ LK+A + E +K+
Sbjct: 121 DDDNFLKKAADLEASKL 137


>AT1G54530.1 | Symbols:  | Calcium-binding EF hand family protein |
           chr1:20366505-20366888 FORWARD LENGTH=127
          Length = 127

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 9/130 (6%)

Query: 5   ILDGATIVNFLEDEEAFNISVCNRFALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDVK 64
           ++   T++ FL D ++F     + F +LD +K+G+LS  E+ + L  +  +E+    +V 
Sbjct: 5   VITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVES----EVA 60

Query: 65  PDPDELGRVYKSLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPVQMALEEDSIL 124
           P  DE   VY ++F +F  +L      + F+    E++ AMA G+G  PV M +  D ++
Sbjct: 61  PG-DETDNVYNAIFERFGEDLVP----KNFRDLIAEILTAMARGIGNSPVIMVVHNDGLI 115

Query: 125 KRAVERECNK 134
            +AV  E  +
Sbjct: 116 MKAVLHESKQ 125


>AT4G38810.2 | Symbols:  | Calcium-binding EF-hand family protein |
           chr4:18115607-18118860 REVERSE LENGTH=375
          Length = 375

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 3/111 (2%)

Query: 4   EILDGATIVNFLEDEEAFNISVCNRFALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDV 63
           ++LDG+ IV  +E+E+ F+  V  +F  LD ++DG LS  E+   +  +           
Sbjct: 13  QVLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVADIGAALGLPAQGT 72

Query: 64  KPDPDELGRVYKSLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPV 114
            PD D    +Y  +  +F H     V   EFK    +++L MA G+   P+
Sbjct: 73  SPDSD---HIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPI 120