Miyakogusa Predicted Gene

Lj1g3v3457460.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3457460.1 Non Chatacterized Hit- tr|Q9SR26|Q9SR26_ARATH
Putative MYB family transcription factor
OS=Arabidopsi,66.67,0.0000000000001,seg,NULL,
NODE_89199_length_161_cov_19.422359.path2.1
         (63 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09370.2 | Symbols: MYB3R-3 | myb domain protein 3r-3 | chr3:...    59   9e-10
AT3G09370.1 | Symbols: MYB3R-3, AtMYB3R3 | myb domain protein 3r...    58   1e-09
AT5G02320.2 | Symbols: MYB3R-5 | myb domain protein 3r-5 | chr5:...    52   1e-07
AT5G02320.1 | Symbols: ATMYB3R5, MYB3R-5 | myb domain protein 3r...    52   1e-07
AT2G13960.1 | Symbols:  | Homeodomain-like superfamily protein |...    52   1e-07

>AT3G09370.2 | Symbols: MYB3R-3 | myb domain protein 3r-3 |
          chr3:2879534-2882128 FORWARD LENGTH=510
          Length = 510

 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 4  VKSEECCLENKQTTXXXXXXXXXXXXXXLRKSPGICSPASTSTSHR---RTTGPIRRAKG 60
          VK E+ C+ENKQ+T                KSP I SPA+ S +HR   RT+GPIRRAKG
Sbjct: 25 VKIEDQCVENKQSTPASCSSVSEGSAGSSHKSPTIASPATVSPTHRYLGRTSGPIRRAKG 84

Query: 61 GWT 63
          GWT
Sbjct: 85 GWT 87


>AT3G09370.1 | Symbols: MYB3R-3, AtMYB3R3 | myb domain protein
          3r-3 | chr3:2879534-2882128 FORWARD LENGTH=505
          Length = 505

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 4  VKSEECCLENKQTTXXXXXXXXXXXXXXLRKSPGICSPASTSTSHR---RTTGPIRRAKG 60
          VK E+ C+ENKQ+T                KSP I SPA+ S +HR   RT+GPIRRAKG
Sbjct: 20 VKIEDQCVENKQSTPASCSSVSEGSAGSSHKSPTIASPATVSPTHRYLGRTSGPIRRAKG 79

Query: 61 GWT 63
          GWT
Sbjct: 80 GWT 82


>AT5G02320.2 | Symbols: MYB3R-5 | myb domain protein 3r-5 |
          chr5:483445-486347 REVERSE LENGTH=548
          Length = 548

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 34/60 (56%)

Query: 4  VKSEECCLENKQTTXXXXXXXXXXXXXXLRKSPGICSPASTSTSHRRTTGPIRRAKGGWT 63
          +K E  C+ENKQ                  KSP I +PA+ S+  RRT+GP+RRAKGGWT
Sbjct: 20 MKIEIQCMENKQPLAASCSSASEGSGCFFLKSPEIATPATVSSFPRRTSGPMRRAKGGWT 79


>AT5G02320.1 | Symbols: ATMYB3R5, MYB3R-5 | myb domain protein
          3r-5 | chr5:483445-486347 REVERSE LENGTH=548
          Length = 548

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 34/60 (56%)

Query: 4  VKSEECCLENKQTTXXXXXXXXXXXXXXLRKSPGICSPASTSTSHRRTTGPIRRAKGGWT 63
          +K E  C+ENKQ                  KSP I +PA+ S+  RRT+GP+RRAKGGWT
Sbjct: 20 MKIEIQCMENKQPLAASCSSASEGSGCFFLKSPEIATPATVSSFPRRTSGPMRRAKGGWT 79


>AT2G13960.1 | Symbols:  | Homeodomain-like superfamily protein |
          chr2:5859683-5861105 FORWARD LENGTH=150
          Length = 150

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 34/60 (56%)

Query: 4  VKSEECCLENKQTTXXXXXXXXXXXXXXLRKSPGICSPASTSTSHRRTTGPIRRAKGGWT 63
          +K E  C+ENKQ                  KSP I +PA+ S+  RRT+GP+RRAKGGWT
Sbjct: 20 MKIEIQCMENKQPLAASCSSASEGSGCFFLKSPEIATPATVSSFPRRTSGPMRRAKGGWT 79