Miyakogusa Predicted Gene

Lj1g3v3446330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3446330.1 Non Chatacterized Hit- tr|I1BP95|I1BP95_RHIO9
Uncharacterized protein OS=Rhizopus delemar (strain
RA,25.14,0.00000000000006,SUBFAMILY NOT NAMED,NULL; NUCLEOPORIN
P54,Nucleoporin Nup54; seg,NULL; Nup54,Nucleoporin Nup54,
alph,CUFF.30820.1
         (360 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G24310.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   420   e-118

>AT1G24310.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: nucleolus;
           EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13
           growth stages; Has 2922 Blast hits to 2454 proteins in
           263 species: Archae - 0; Bacteria - 57; Metazoa - 1043;
           Fungi - 654; Plants - 388; Viruses - 11; Other
           Eukaryotes - 769 (source: NCBI BLink). |
           chr1:8624192-8626179 FORWARD LENGTH=377
          Length = 377

 Score =  420 bits (1080), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/262 (75%), Positives = 231/262 (88%)

Query: 92  LTTQMANVAPVPYSLPDRDVQAIVDAYKEDPGNPKFAFKHLLFSVTEPQFRMKPAGISDI 151
           LTTQMA VAP+PYSL DRDVQAI++AYKEDP NPK+AF+HLLFSVTEPQ+R+KPA +SDI
Sbjct: 110 LTTQMAPVAPIPYSLADRDVQAIIEAYKEDPTNPKYAFQHLLFSVTEPQYRVKPAAVSDI 169

Query: 152 MWAEAMGKLEGMESADRERLWPQVVQGFKDLSQRLKIQDEVIASDAERLRVTQSNVKMLQ 211
           MWAEAM KLEGM+S +RERLWPQ+VQGFKDLSQRLK+QDEV+ SD +R++ TQSNVKMLQ
Sbjct: 170 MWAEAMSKLEGMDSTERERLWPQLVQGFKDLSQRLKLQDEVLVSDRDRIKTTQSNVKMLQ 229

Query: 212 RHFQADTLPWIQRLKQKEQILQQRLLRVMRIVEALEGKGCRIPLTKGEAELAEKLATITR 271
           RH QA T P I+RL+QKEQ LQ+R+LRVMRI+E LEGKG R+PLTKGEAEL+EKL  ITR
Sbjct: 230 RHLQASTFPSIERLRQKEQSLQRRMLRVMRIIEGLEGKGFRLPLTKGEAELSEKLTAITR 289

Query: 272 QLKGSGAELTRRVQNLLTVSRVQAKSNGFGGPVYLPGSTKIHEQSLTDLQEVLQQQMEAI 331
           Q+KG GAEL+RRVQ+L T+SR QA S   G  +YLPGSTKI EQSL D+QEVLQQ+ EAI
Sbjct: 290 QVKGPGAELSRRVQSLQTISRAQANSIAAGSSLYLPGSTKIDEQSLIDMQEVLQQETEAI 349

Query: 332 ARLGSVLKRDVRDMEIMIAEDT 353
            RLG+VLKRD+RDMEIM+AEDT
Sbjct: 350 GRLGNVLKRDMRDMEIMVAEDT 371



 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 34/45 (75%), Gaps = 10/45 (22%)

Query: 1  MFGAQPSSSPSPSLFGTPSA------STPAFGTPSSTPAFGTPSS 39
          MFG  PSSSPS   FGTPS+      S+PAFGTPS+TPAFGTPS+
Sbjct: 1  MFGT-PSSSPS---FGTPSSTPAFGTSSPAFGTPSATPAFGTPSN 41