Miyakogusa Predicted Gene

Lj1g3v3444160.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3444160.2 Non Chatacterized Hit- tr|G7IKS8|G7IKS8_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,60.49,5e-17,TPR-like,NULL; no
description,Tetratricopeptide-like helical; TPR_8,Tetratricopeptide
repeat,CUFF.30752.2
         (384 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02130.1 | Symbols: NDP1 | Tetratricopeptide repeat (TPR)-lik...   348   3e-96

>AT5G02130.1 | Symbols: NDP1 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:419747-421958 REVERSE
           LENGTH=420
          Length = 420

 Score =  348 bits (893), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 192/389 (49%), Positives = 261/389 (67%), Gaps = 14/389 (3%)

Query: 1   MAVPDA----VRMINYAMKQARTDKSVGSYGLGMLVLKHCVTTELTEGEDPQHENSKGIA 56
           ++VP+A    ++M+NYA+  AR+ KS  SY  GMLVL+ C+  +    +D    +SK   
Sbjct: 41  ISVPNANHVAIQMVNYALSHARSQKSDESYAQGMLVLEQCLGNQ--PNDDQVSHDSKATV 98

Query: 57  LLAWSTLLSERGEYGDAIEKLQSVQELTNSLLGVRVAAFEAEAGLHLELGQDDMASAVGD 116
           LLA S LL E G   +AIE+L+ V  LT+S L +RV A EA  GL ++ GQDD +  V D
Sbjct: 99  LLAMSDLLYESGNSSEAIERLKQVMTLTHSSLAIRVVAVEALVGLLIQSGQDDASLDVAD 158

Query: 117 KCIELLEKQNAEDSEALKVRAKALKGLIELVKGNIESAEAFFDKSLLSTLCDGSAALSYG 176
           + ++L+++   E+ + +    KA+KGL ELVKGNIESAE+ F        C G+ ALSYG
Sbjct: 159 EFLKLVKESGHENLQGVVATVKAIKGLAELVKGNIESAESLFRGLENHESCKGNIALSYG 218

Query: 177 EFLQTKHNYSMAKEVYQNIIQGATTIKNSGNPYLGAGNMNLEGLMMGAMCALGQLESHLG 236
           E+L    N+ +AKE+YQ  IQG T  K S    + + NMNL+ + + A  ALGQLESH+G
Sbjct: 219 EYLHATGNFELAKEMYQKAIQGVTETKES----MCSCNMNLKAVSLAATFALGQLESHIG 274

Query: 237 NFGNAEQHLTKALNQAEETYGDRHPKVGVVLTSIALMYRRKAMQEHSSSILVQEGLYRRV 296
           NFG AE+ LT AL + EE YGD HPKVGV+LT++ALMY  KA QE SSSIL+QEGLYR+ 
Sbjct: 275 NFGVAEKTLTDALTKTEEHYGDNHPKVGVILTAVALMYGNKAKQERSSSILIQEGLYRKA 334

Query: 297 TDLLKVPPGETDSEGAVPLVDRSDIAALARGAYSEVLSIQENRKDEGEKMKNFAEAIWRN 356
            +L+K PP   DS+G + + +  ++ ALAR  Y+E+L IQENRK EGEKMK++AE+ WRN
Sbjct: 335 LELMKAPP--LDSKGIINM-ENQEVIALARAGYAELLLIQENRKSEGEKMKSWAESAWRN 391

Query: 357 HRMSLDDALGNTES-NKVWVIDARISRLL 384
            R+SL +AL  +E   KV +IDAR +R+L
Sbjct: 392 KRISLSEALTLSEPLGKVAIIDARTTRVL 420