Miyakogusa Predicted Gene

Lj1g3v3444150.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3444150.1 tr|A9RJ26|A9RJ26_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=Pb PE=4
SV=1,57.32,7e-19,Chlorophyll a-b binding protein,Chlorophyll a/b
binding protein domain,CUFF.30751.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02120.1 | Symbols: OHP | one helix protein | chr5:419144-419...   115   7e-27

>AT5G02120.1 | Symbols: OHP | one helix protein | chr5:419144-419633
           FORWARD LENGTH=110
          Length = 110

 Score =  115 bits (287), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 69/92 (75%), Gaps = 5/92 (5%)

Query: 26  SATHKNKNRVSFFRVQA-----AAKPPAGVEFPKVQPQFKAPFLGFTKTAEVWNSRACMI 80
           +  H  +  + F R Q      AAK P GV  PK QP+ +  FLGFT+TAE+WNSRACMI
Sbjct: 19  THCHGRRQNLCFNRKQQPFVVRAAKLPEGVIVPKAQPKSQPAFLGFTQTAEIWNSRACMI 78

Query: 81  GLIGTFIVELIINKGILQVIGVEIGKGLNLPL 112
           GLIGTFIVELI+NKGIL++IGVEIGKGL+LPL
Sbjct: 79  GLIGTFIVELILNKGILELIGVEIGKGLDLPL 110