Miyakogusa Predicted Gene

Lj1g3v3443700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3443700.1 Non Chatacterized Hit- tr|K4BML8|K4BML8_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,51.69,2e-19,no
description,Dynein light chain, type 1/2; Dynein_light,Dynein light
chain, type 1/2; SUBFAMILY NO,CUFF.30718.1
         (113 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-...    99   4e-22
AT3G16120.1 | Symbols:  | Dynein light chain type 1 family prote...    92   5e-20
AT4G27360.1 | Symbols:  | Dynein light chain type 1 family prote...    83   4e-17
AT1G23220.1 | Symbols:  | Dynein light chain type 1 family prote...    74   2e-14
AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-...    69   8e-13
AT5G20110.1 | Symbols:  | Dynein light chain type 1 family prote...    67   2e-12
AT4G15930.1 | Symbols:  | Dynein light chain type 1 family prote...    64   2e-11

>AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO
          guanyl-nucleotide exchange factor 11 |
          chr1:19458844-19459235 REVERSE LENGTH=94
          Length = 94

 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 62/89 (69%)

Query: 1  MLEGKGVVRETDMPEEMQNHVMEFAHQALDAHEVSDCQSISHFIKQKLDEAYGPAWNSVV 60
          MLEGK +V ++DMP +MQ   M FA QALD  +V DC+SI+  IK++ DE YG  W  VV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GKDFGSCITYLSGSFIFFHVEMMEFLIFK 89
          G +FG   T+  G+FI+F +E ++FLIFK
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFK 89


>AT3G16120.1 | Symbols:  | Dynein light chain type 1 family
          protein | chr3:5465035-5465395 FORWARD LENGTH=93
          Length = 93

 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 58/89 (65%)

Query: 1  MLEGKGVVRETDMPEEMQNHVMEFAHQALDAHEVSDCQSISHFIKQKLDEAYGPAWNSVV 60
          MLEGK  V ETDMP +MQ   M+ A Q+LD  +V D  SI+  IK++ DE YG  W  VV
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GKDFGSCITYLSGSFIFFHVEMMEFLIFK 89
          G +FG   T+  G+FI+FH+  + FLIFK
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFK 89


>AT4G27360.1 | Symbols:  | Dynein light chain type 1 family
          protein | chr4:13694032-13694517 FORWARD LENGTH=103
          Length = 103

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 56/89 (62%)

Query: 1  MLEGKGVVRETDMPEEMQNHVMEFAHQALDAHEVSDCQSISHFIKQKLDEAYGPAWNSVV 60
          MLEGK V+ +TDM + M+   +  A +ALD  +V++   I+ FIK++ D +YG  W  +V
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GKDFGSCITYLSGSFIFFHVEMMEFLIFK 89
          G  FGS +T+ SG FI F V  +  L+FK
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFK 89


>AT1G23220.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr1:8242614-8244136 FORWARD LENGTH=129
          Length = 129

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 1/83 (1%)

Query: 8   VRETDMPEEMQNHVMEFAHQALDAHE-VSDCQSISHFIKQKLDEAYGPAWNSVVGKDFGS 66
           VR +DMP   QN     + + L+A    +D + ++H +K+  D AYGPAW+ +VG  FGS
Sbjct: 38  VRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGS 97

Query: 67  CITYLSGSFIFFHVEMMEFLIFK 89
            +T+ +G F++F ++ +  L+FK
Sbjct: 98  YVTHSTGGFLYFQIDKVYVLLFK 120


>AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO
          guanyl-nucleotide exchange factor 11 |
          chr1:19455766-19459235 REVERSE LENGTH=607
          Length = 607

 Score = 68.6 bits (166), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 40/59 (67%)

Query: 1  MLEGKGVVRETDMPEEMQNHVMEFAHQALDAHEVSDCQSISHFIKQKLDEAYGPAWNSV 59
          MLEGK +V ++DMP +MQ   M FA QALD  +V DC+SI+  IK++ DE YG  W  V
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCV 59


>AT5G20110.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr5:6791542-6793253 REVERSE LENGTH=209
          Length = 209

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 48/78 (61%)

Query: 12  DMPEEMQNHVMEFAHQALDAHEVSDCQSISHFIKQKLDEAYGPAWNSVVGKDFGSCITYL 71
           DMP  MQ H    A   LD+ E    + ++  +K++ D+ YGPAW+ +VG  FGS +T+ 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  SGSFIFFHVEMMEFLIFK 89
           +G FI+F ++ +  L+FK
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200


>AT4G15930.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr4:9036344-9037825 FORWARD LENGTH=123
          Length = 123

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 5   KGVVRETDMPEEMQNHVMEFAHQALDAHEVSDCQSISHFIKQKLDEAYGPAWNSVVGKDF 64
           + V++  DM ++MQ   +E A  A + + V   + I+  IK++ D+ +G  W+ +VG++F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVE--KDIAENIKKEFDKKHGATWHCIVGRNF 96

Query: 65  GSCITYLSGSFIFFHVEMMEFLIFKDG 91
           GS +T+ +  F++F+++    L+FK G
Sbjct: 97  GSYVTHETNHFVYFYLDQKAVLLFKSG 123