Miyakogusa Predicted Gene
- Lj1g3v3442630.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3442630.1 Non Chatacterized Hit- tr|I3SU05|I3SU05_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,56.6,4e-19,
,CUFF.30705.1
(153 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G02020.1 | Symbols: SIS | Encodes a protein involved in salt ... 99 1e-21
AT5G59080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 62 2e-10
AT2G39855.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 60 5e-10
AT5G02020.2 | Symbols: SIS | Encodes a protein involved in salt ... 57 5e-09
AT3G55646.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 56 9e-09
>AT5G02020.1 | Symbols: SIS | Encodes a protein involved in salt
tolerance, names SIS (Salt Induced Serine rich). |
chr5:386557-387921 REVERSE LENGTH=149
Length = 149
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 16 ELFGSKESHXXXXXXXXXXXXXXXXXKVLGRESLRSELSVKTANETWSSKIGIQDDVSKG 75
ELFGS+E+ KVLGRES+R E +SK G G
Sbjct: 22 ELFGSRENPSSPSSSGILGSIFPPPSKVLGRESVRQETVTGGCWNEKTSKTG-------G 74
Query: 76 NYGEAQHTENKDMSFIYQHQRIPPCPLSSSIYYGGQDTYYHSQSTQNAGSNTLHKNDVGN 135
N + + S Q QR+ PC LSSSIYYGG D Y+ QN+ SN+ +K D G
Sbjct: 75 NVDRNREQQENHGSGYQQDQRVQPCHLSSSIYYGGPDVYFQ---PQNSTSNSTNKKDGGE 131
Query: 136 DDSGMASRGNWWQGSLYY 153
DDSG ASRGNWWQGSLYY
Sbjct: 132 DDSGSASRGNWWQGSLYY 149
>AT5G59080.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: response to
oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN:
18 plant structures; EXPRESSED DURING: 9 growth stages;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G46880.1); Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink). |
chr5:23847691-23848403 REVERSE LENGTH=135
Length = 135
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 62/146 (42%), Gaps = 32/146 (21%)
Query: 13 FTAELFGSKESHXXXXXXXXXXXXXXXXXKVLGRESLRSELSVKTANETWSSKIGIQDDV 72
FTAELFGSK+ ++ S +A + +SK G Q
Sbjct: 17 FTAELFGSKDPSPPSSSSGIFS-------------TMFPHPSKGSARDGSNSKHGSQ--- 60
Query: 73 SKGNYGEAQHTENKDMSFIYQHQRIPPCPLSSSIYYGGQDTYYHSQSTQNAGSNTLHKND 132
AQ E S Q R+ PC LSSS+YYGGQD Y S + Q +
Sbjct: 61 -------AQRRE----SLNAQEDRVEPCHLSSSLYYGGQDVYARSTTNQTYPPVKNDRRR 109
Query: 133 VGNDDSGM-----ASRGNWWQGSLYY 153
G DD+ SRGNWWQGSLYY
Sbjct: 110 SGEDDANGQNPQDVSRGNWWQGSLYY 135
>AT2G39855.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G55646.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:16637845-16638852 FORWARD LENGTH=142
Length = 142
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 81 QHTENKDMSFIYQHQRIPPCPLSSSIYYGGQDTYYHSQSTQNAGSNTLHKNDVGNDDSGM 140
+ ++NK+ + PPC LSSSIYYGGQD Y S + +A +K D DS
Sbjct: 75 ERSKNKERKSYQSEETQPPCNLSSSIYYGGQDNYSSSTTNPDA-----YKKDGEEGDSES 129
Query: 141 ASRGNWWQGSLYY 153
ASRGNWW+GS Y
Sbjct: 130 ASRGNWWEGSFNY 142
>AT5G02020.2 | Symbols: SIS | Encodes a protein involved in salt
tolerance, names SIS (Salt Induced Serine rich). |
chr5:386999-387921 REVERSE LENGTH=137
Length = 137
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 16 ELFGSKESHXXXXXXXXXXXXXXXXXKVLGRESLRSELSVKTANETWSSKIGIQDDVSKG 75
ELFGS+E+ KVLGRES+R E +SK G G
Sbjct: 22 ELFGSRENPSSPSSSGILGSIFPPPSKVLGRESVRQETVTGGCWNEKTSKTG-------G 74
Query: 76 NYGEAQHTENKDMSFIYQHQRIPPCPLSSSIYYGGQDTYYHSQ-STQNA 123
N + + S Q QR+ PC LSSSIYYGG D Y+ Q ST N+
Sbjct: 75 NVDRNREQQENHGSGYQQDQRVQPCHLSSSIYYGGPDVYFQPQNSTSNS 123
>AT3G55646.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G39855.2); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr3:20645087-20646148 FORWARD LENGTH=146
Length = 146
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 79 EAQHTENKDMSFIYQHQRIPPCPLSSSIYYGGQDTYYHSQSTQNAGSNTLHKNDVGNDDS 138
+ + + K+ Y + PPC LSSS+YYGGQ+T S+ ++ +K D DS
Sbjct: 76 KGERSNKKEKKSYYNEETEPPCHLSSSLYYGGQET----YSSTTTTTHDTYKKDGEEGDS 131
Query: 139 GMASRGNWWQGSLYY 153
ASRGNWW+GSLYY
Sbjct: 132 KRASRGNWWEGSLYY 146