Miyakogusa Predicted Gene

Lj1g3v3407640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3407640.1 tr|I1K778|I1K778_SOYBN Coatomer subunit gamma
OS=Glycine max PE=3 SV=1,96.25,0,no description,Armadillo-like
helical; Adaptin_N,Clathrin/coatomer adaptor, adaptin-like,
N-terminal,CUFF.30750.1
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34450.1 | Symbols:  | coatomer gamma-2 subunit, putative / g...   458   e-129

>AT4G34450.1 | Symbols:  | coatomer gamma-2 subunit, putative /
           gamma-2 coat protein, putative / gamma-2 COP, putative |
           chr4:16471956-16476795 FORWARD LENGTH=886
          Length = 886

 Score =  458 bits (1178), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/241 (89%), Positives = 232/241 (96%)

Query: 1   MAQPFMKKDDDRDDEVEYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQG 60
           MAQP +KKDDD DDE+EYSPF+GIEKGAVLQEARVFNDPQ+D RRCSQVITKLLYLLNQG
Sbjct: 1   MAQPLVKKDDDHDDELEYSPFMGIEKGAVLQEARVFNDPQVDPRRCSQVITKLLYLLNQG 60

Query: 61  ETFTKVEATEVFFAVTKLFQSKDMGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKID 120
           E+FTKVEATEVFF+VTKLFQSKD GLRRMVYL+IKE+SPS+DEVIIVTSSLMKDMNSKID
Sbjct: 61  ESFTKVEATEVFFSVTKLFQSKDTGLRRMVYLIIKELSPSSDEVIIVTSSLMKDMNSKID 120

Query: 121 MYRANAIRVLCRITDGTLLAQIERYLKQAIVDKNPVVASAALISGIHLLHTNPEIVKRWS 180
           MYRANAIRVLCRI DGTLL QIERYLKQAIVDKNPVV+SAAL+SG+HLL TNPEIVKRWS
Sbjct: 121 MYRANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVSSAALVSGLHLLKTNPEIVKRWS 180

Query: 181 NEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPIAQCLLIRYTSQ 240
           NEVQE +QSR+ALVQFHALALLHQIRQNDRLAVSKLV SLTRG+VRSP+AQCLLIRYTSQ
Sbjct: 181 NEVQEGIQSRSALVQFHALALLHQIRQNDRLAVSKLVGSLTRGSVRSPLAQCLLIRYTSQ 240

Query: 241 V 241
           V
Sbjct: 241 V 241