Miyakogusa Predicted Gene
- Lj1g3v3404350.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3404350.1 Non Chatacterized Hit- tr|I1K789|I1K789_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,89.51,0,RNA
recognition motif,RNA recognition motif domain; seg,NULL; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT N,CUFF.30635.1
(283 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 310 6e-85
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 270 7e-73
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 270 7e-73
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 157 8e-39
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 156 2e-38
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 152 3e-37
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 151 5e-37
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 150 8e-37
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 150 1e-36
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 149 2e-36
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 149 2e-36
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 147 6e-36
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 132 2e-31
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 120 1e-27
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 108 3e-24
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 105 4e-23
AT3G54770.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 94 9e-20
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 94 1e-19
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 84 2e-16
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 84 2e-16
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 3e-16
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 3e-16
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 3e-16
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 81 1e-15
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 81 1e-15
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 2e-15
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 2e-15
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 2e-15
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 2e-15
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 78 7e-15
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 78 7e-15
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 78 9e-15
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 78 9e-15
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 78 9e-15
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 77 1e-14
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 77 1e-14
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 77 1e-14
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 77 1e-14
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 77 1e-14
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 77 1e-14
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 77 1e-14
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 77 1e-14
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 4e-14
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 4e-14
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 5e-14
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 74 8e-14
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 74 1e-13
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 74 1e-13
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 1e-13
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 3e-13
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 3e-13
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 72 4e-13
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 72 4e-13
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 72 4e-13
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 72 4e-13
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 69 5e-12
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 69 5e-12
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 68 6e-12
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 67 1e-11
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 64 8e-11
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 3e-10
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 62 4e-10
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 6e-10
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 61 7e-10
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 6e-09
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 6e-09
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 6e-09
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 6e-09
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 7e-09
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 7e-09
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 57 2e-08
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 55 7e-08
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 55 8e-08
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 54 1e-07
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 53 2e-07
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 53 2e-07
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 53 2e-07
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 53 2e-07
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 3e-07
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 3e-07
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 52 5e-07
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 52 6e-07
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 52 6e-07
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 52 6e-07
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 51 7e-07
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 7e-07
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 50 1e-06
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 50 2e-06
AT3G12640.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 49 5e-06
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 9e-06
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 310 bits (795), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 168/273 (61%), Positives = 195/273 (71%), Gaps = 10/273 (3%)
Query: 17 FQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 76
F +NSPFGDTTFTKVFVGGLAWETQSET+R++FEQ+GEILEAVVI DKNTGRSKGYGFV
Sbjct: 11 FHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFV 70
Query: 77 TFRDPEAARRACADPAPVIDGRRANCNLASXXX-------XXXXXXXXXXXXASHYVGSL 129
TFRDPEAARRACADP P+IDGRRANCNLAS AS Y+G++
Sbjct: 71 TFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNV 130
Query: 130 QPARGSYVGGFGYQQQPLSYGYQQGLVXXX-XXXXXXXXXXXXXQNVYNPYVGQQYLQIY 188
Q RGS +G + Y QQPL Y YQQG+V Q +Y+PY+GQQYLQ+Y
Sbjct: 131 QGPRGSLIGNYPY-QQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPYMGQQYLQVY 189
Query: 189 GVPGAVNTTVYPYGQLGQTIPSGHGYTAMPGYTVPAHQIVPYGGSSVNSITTSPMPAIQA 248
GVPGAVN+ VY YGQL QTIP+GHGYTA+ GY+VP I+ GG +V+++TTS MPA+QA
Sbjct: 190 GVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQLGGPTVSTMTTSSMPALQA 249
Query: 249 SYPSGIASPVPGQPQFIVPAPSQFMQGGGHDQT 281
YPSGI P P Q IV +P QFMQ DQT
Sbjct: 250 PYPSGIPGPAPVQSHIIVHSP-QFMQSTASDQT 281
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 270 bits (691), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 159/291 (54%), Positives = 181/291 (62%), Gaps = 25/291 (8%)
Query: 1 MAYQAIQXXXXXXXXXFQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAV 60
MAY +I F +NSPFGDTTFTKVFVGGLAWETQSET+RR+F+Q+G+ILEAV
Sbjct: 1 MAYHSI------PSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAV 54
Query: 61 VITDKNTGRSKGYGFVTFRDPEAARRACADPAPVIDGRRANCNLASXXXXXXXXXXXXXX 120
VITDKNTGRSKGYGFVTFRDPEAARRAC DP P+IDGRRANCNLAS
Sbjct: 55 VITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIP 114
Query: 121 XA-------SHYVGSLQPARGSYVGGFGYQQQPLSYGYQQGLVXXX-XXXXXXXXXXXXX 172
A S YVGS+Q RG + G Y Q P +Y YQQG+V
Sbjct: 115 HAPGRVRPPSPYVGSVQSPRGLHFGSHPYHQPP-TYNYQQGVVYPYGVTPYGPDYMYSQS 173
Query: 173 QNVYNPYVGQQYLQIYGVPGAVNTTVYPYGQLGQTIPSGHGYTAMPGYTVPAHQIVPYGG 232
Q Y PY+GQQYLQ+YGVPGAVN+ Y YGQL TIP HGYTA GY+ P ++ G
Sbjct: 174 QGFYGPYMGQQYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGA 233
Query: 233 SSVNSITTSPMPAIQASYPSGIASPVPGQPQFIVPAPSQFMQGGGHDQTAG 283
TSPM AIQ+ YPS A P + IV P Q++Q G DQT G
Sbjct: 234 -------TSPMSAIQSPYPSPSA---PTHQRVIVQTPPQYIQSSGSDQTTG 274
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 270 bits (691), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 159/291 (54%), Positives = 181/291 (62%), Gaps = 25/291 (8%)
Query: 1 MAYQAIQXXXXXXXXXFQMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAV 60
MAY +I F +NSPFGDTTFTKVFVGGLAWETQSET+RR+F+Q+G+ILEAV
Sbjct: 1 MAYHSI------PSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAV 54
Query: 61 VITDKNTGRSKGYGFVTFRDPEAARRACADPAPVIDGRRANCNLASXXXXXXXXXXXXXX 120
VITDKNTGRSKGYGFVTFRDPEAARRAC DP P+IDGRRANCNLAS
Sbjct: 55 VITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIP 114
Query: 121 XA-------SHYVGSLQPARGSYVGGFGYQQQPLSYGYQQGLVXXX-XXXXXXXXXXXXX 172
A S YVGS+Q RG + G Y Q P +Y YQQG+V
Sbjct: 115 HAPGRVRPPSPYVGSVQSPRGLHFGSHPYHQPP-TYNYQQGVVYPYGVTPYGPDYMYSQS 173
Query: 173 QNVYNPYVGQQYLQIYGVPGAVNTTVYPYGQLGQTIPSGHGYTAMPGYTVPAHQIVPYGG 232
Q Y PY+GQQYLQ+YGVPGAVN+ Y YGQL TIP HGYTA GY+ P ++ G
Sbjct: 174 QGFYGPYMGQQYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGA 233
Query: 233 SSVNSITTSPMPAIQASYPSGIASPVPGQPQFIVPAPSQFMQGGGHDQTAG 283
TSPM AIQ+ YPS A P + IV P Q++Q G DQT G
Sbjct: 234 -------TSPMSAIQSPYPSPSA---PTHQRVIVQTPPQYIQSSGSDQTTG 274
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 79/85 (92%)
Query: 22 SPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDP 81
SPFGDTT+TKVFVGGLAWET ++ MRRYFEQFGEILEAV+ITDKNTG+SKGYGFVTFR+
Sbjct: 9 SPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRES 68
Query: 82 EAARRACADPAPVIDGRRANCNLAS 106
++A RA ADP PVIDGR+ANCN+AS
Sbjct: 69 DSATRAVADPNPVIDGRKANCNIAS 93
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 79/85 (92%)
Query: 22 SPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDP 81
SPFGDTT+TKVFVGGLAWET ++ MRRYFEQFGEILEAV+ITDKNTG+SKGYGFVTFR+
Sbjct: 9 SPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRES 68
Query: 82 EAARRACADPAPVIDGRRANCNLAS 106
++A RA ADP PVIDGR+ANCN+AS
Sbjct: 69 DSATRAVADPNPVIDGRKANCNIAS 93
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 22 SPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDP 81
SPFGDTT TKVFVGGLAWET ++ MRRYF+QFGEILEAV+ITDK TG+SKGYGFVTFRD
Sbjct: 9 SPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDS 68
Query: 82 EAARRACADPAPVIDGRRANCNLAS 106
++A RA ADP PVIDGR+ANCN+AS
Sbjct: 69 DSATRAVADPNPVIDGRKANCNIAS 93
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 68/83 (81%), Positives = 74/83 (89%)
Query: 24 FGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEA 83
GDTT+TKVFVGGLAWET ETM+++FEQFGEILEAVVITDK +GRSKGYGFVTFR+ EA
Sbjct: 7 LGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Query: 84 ARRACADPAPVIDGRRANCNLAS 106
AR AC D PVIDGRRANCNLAS
Sbjct: 67 ARSACVDATPVIDGRRANCNLAS 89
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 68/83 (81%), Positives = 74/83 (89%)
Query: 24 FGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEA 83
GDTT+TKVFVGGLAWET ETM+++FEQFGEILEAVVITDK +GRSKGYGFVTFR+ EA
Sbjct: 7 LGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Query: 84 ARRACADPAPVIDGRRANCNLAS 106
AR AC D PVIDGRRANCNLAS
Sbjct: 67 ARSACVDATPVIDGRRANCNLAS 89
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/83 (81%), Positives = 74/83 (89%)
Query: 24 FGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEA 83
GDTT+TKVFVGGLAWET ETM+++FEQFGEILEAVVITDK +GRSKGYGFVTFR+ EA
Sbjct: 7 LGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Query: 84 ARRACADPAPVIDGRRANCNLAS 106
AR AC D PVIDGRRANCNLAS
Sbjct: 67 ARSACVDATPVIDGRRANCNLAS 89
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 66/81 (81%), Positives = 75/81 (92%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
DTTFTKVFVGGLAWET ++R YFEQFG+I+EAVVITDK++GRSKGYGFVTF DPEAA+
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 86 RACADPAPVIDGRRANCNLAS 106
+AC DPAPVIDGRRANCNLA+
Sbjct: 63 KACVDPAPVIDGRRANCNLAA 83
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 66/81 (81%), Positives = 75/81 (92%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
DTTFTKVFVGGLAWET ++R YFEQFG+I+EAVVITDK++GRSKGYGFVTF DPEAA+
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 86 RACADPAPVIDGRRANCNLAS 106
+AC DPAPVIDGRRANCNLA+
Sbjct: 63 KACVDPAPVIDGRRANCNLAA 83
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/91 (76%), Positives = 77/91 (84%), Gaps = 2/91 (2%)
Query: 17 FQMV--NSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG 74
FQM N+ DT TK+FVGGLAWETQ +TMRRYFEQFGEI+EAVVITDKNTGRSKGYG
Sbjct: 7 FQMEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYG 66
Query: 75 FVTFRDPEAARRACADPAPVIDGRRANCNLA 105
FVTF++ EAA RAC + PVIDGRRANCNLA
Sbjct: 67 FVTFKEAEAAMRACQNMNPVIDGRRANCNLA 97
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 70/87 (80%)
Query: 20 VNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 79
VN FGDT TKVFVGGLAW+T E M +F ++G+ILEAV+I+DK T RSKGYGFVTF+
Sbjct: 7 VNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFK 66
Query: 80 DPEAARRACADPAPVIDGRRANCNLAS 106
D +AA RAC D P+I+GRRANCNLAS
Sbjct: 67 DAKAATRACEDSTPIINGRRANCNLAS 93
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 65/80 (81%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
DT +TK++VGGL WET++E +R YFEQFG+I+ ++ D+ TGRS+GYGFVTFRD E+A
Sbjct: 48 DTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESAT 107
Query: 86 RACADPAPVIDGRRANCNLA 105
RAC +P PVIDGR A CNLA
Sbjct: 108 RACQNPKPVIDGREAKCNLA 127
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 60/80 (75%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
DTTFTK++VGGL W T+ E + +F++FGEI+ V+ D+ T RS+GYGFVTF+D E+A
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 86 RACADPAPVIDGRRANCNLA 105
RAC DP P I+GR NC LA
Sbjct: 69 RACKDPNPTIEGRITNCKLA 88
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 60/81 (74%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
DT TK+FVG L W T ++ +RRYFEQFG++++A V+++ GRSKGYGF+TFRD +
Sbjct: 8 DTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTV 67
Query: 86 RACADPAPVIDGRRANCNLAS 106
RA + P+IDGR NCNLAS
Sbjct: 68 RALQNSKPIIDGRTTNCNLAS 88
>AT3G54770.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275731 REVERSE LENGTH=218
Length = 218
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 46 MRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPAPVIDGRRANCNLA 105
M +F ++G+ILEAV+I+DK T RSKGYGFVTF+D +AA RAC D P+I+GRRANCNLA
Sbjct: 1 MYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLA 60
Query: 106 S 106
S
Sbjct: 61 S 61
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 55/76 (72%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
TK++V GL W T++E + YFE+FGEI+ A V+ D T RSKG+GFVTFR+ E+A RAC
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 90 DPAPVIDGRRANCNLA 105
+P IDGR NC LA
Sbjct: 69 NPNHTIDGRTVNCKLA 84
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D T K+FV GL WET ET+ FE +GEI E V+ DK TG++KG+GFV F+ + A+
Sbjct: 100 DVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAK 159
Query: 86 RACADPAPVIDGRRANCNLAS 106
A +P I R A C LAS
Sbjct: 160 EALKEPKKRILNRTATCQLAS 180
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D T K+FV GL WET ET+ FE +GEI E V+ DK TG++KG+GFV F+ + A+
Sbjct: 100 DVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAK 159
Query: 86 RACADPAPVIDGRRANCNLAS 106
A +P I R A C LAS
Sbjct: 160 EALKEPKKRILNRTATCQLAS 180
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+F+GG++WET + +R YF FGE+LEAV++ D+ TGR++G+GFV F DP A R
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL- 65
Query: 91 PAPVIDGR 98
+IDG+
Sbjct: 66 LKHIIDGK 73
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 25 GDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
G + K+FVGGLA ++YF QFG I + VV+ D T R +G+GF+++ EA
Sbjct: 123 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 182
Query: 85 RRACADPAPVIDGRRANCNLA 105
+ ++G+ LA
Sbjct: 183 DKVLQKTFHELNGKMVEVKLA 203
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+F+GG++WET + +R YF FGE+LEAV++ D+ TGR++G+GFV F DP A R
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL- 65
Query: 91 PAPVIDGR 98
+IDG+
Sbjct: 66 LKHIIDGK 73
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 25 GDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
G + K+FVGGLA ++YF QFG I + VV+ D T R +G+GF+++ EA
Sbjct: 101 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 160
Query: 85 RRACADPAPVIDGRRANCNLA 105
+ ++G+ LA
Sbjct: 161 DKVLQKTFHELNGKMVEVKLA 181
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+F+GG++WET + +R YF FGE+LEAV++ D+ TGR++G+GFV F DP A R
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL- 65
Query: 91 PAPVIDGR 98
+IDG+
Sbjct: 66 LKHIIDGK 73
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 25 GDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
G + K+FVGGLA ++YF QFG I + VV+ D T R +G+GF+++ EA
Sbjct: 101 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 160
Query: 85 RRACADPAPVIDGRRANCNLA 105
+ ++G+ LA
Sbjct: 161 DKVLQKTFHELNGKMVEVKLA 181
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 27 TTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARR 86
+ K+F+GG++W+T E ++ YF ++G+++EAV++ D+ TGR++G+GF+ F DP A R
Sbjct: 9 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 68
Query: 87 ACADPAPVIDGR 98
D +IDGR
Sbjct: 69 VIMDKH-IIDGR 79
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+TF E+
Sbjct: 120 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 179
Query: 91 PAPVIDGR 98
++G+
Sbjct: 180 TFHELNGK 187
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 27 TTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARR 86
+ K+F+GG++W+T E ++ YF ++G+++EAV++ D+ TGR++G+GF+ F DP A R
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71
Query: 87 ACADPAPVIDGR 98
D +IDGR
Sbjct: 72 VIMDKH-IIDGR 82
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+TF E+
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 91 PAPVIDGR 98
++G+
Sbjct: 183 TFHELNGK 190
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
++ K+F+GG++W+T E +R YF +G+++EAV++ D+ TGR++G+GF+ F DP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 86 RACADPAPVIDGR 98
R D +IDGR
Sbjct: 62 RVIMDKH-IIDGR 73
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGL E + YF+QFG I + VV+ D NT R +G+GF+TF +A R
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 91 PAPVIDGR 98
++G+
Sbjct: 171 TFHELNGK 178
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
++ K+F+GG++W+T E +R YF +G+++EAV++ D+ TGR++G+GF+ F DP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 86 RACADPAPVIDGR 98
R D +IDGR
Sbjct: 62 RVIMDKH-IIDGR 73
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGL E + YF+QFG I + VV+ D NT R +G+GF+TF +A R
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 91 PAPVIDGR 98
++G+
Sbjct: 171 TFHELNGK 178
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
++ K+F+GG++W+T E +R YF +G+++EAV++ D+ TGR++G+GF+ F DP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 86 RACADPAPVIDGR 98
R D +IDGR
Sbjct: 62 RVIMDKH-IIDGR 73
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGL E + YF+QFG I + VV+ D NT R +G+GF+TF +A R
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 91 PAPVIDGR 98
++G+
Sbjct: 171 TFHELNGK 178
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
++ K+F+GG++W+T E +R YF +G+++EAV++ D+ TGR++G+GF+ F DP +
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 86 RACADPAPVIDGR 98
R D +IDGR
Sbjct: 62 RVIMDKH-IIDGR 73
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGL E + YF+QFG I + VV+ D NT R +G+GF+TF +A R
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 91 PAPVIDGR 98
++G+
Sbjct: 171 TFHELNGK 178
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+F+GG++W+T E ++ YF FGE++EAV++ D+ TGR++G+GFV F DP A +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 91 PAPVIDGRRANCNLA 105
IDGR A
Sbjct: 67 KHN-IDGRLVEAKKA 80
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%)
Query: 22 SPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDP 81
SP G K+FVGGL + YFEQFG + VV+ D NT R +G+GF+T+
Sbjct: 100 SPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSE 159
Query: 82 EAARRACADPAPVIDGRRANCNLA 105
EA + ++G+ A
Sbjct: 160 EAVEKVLLKTFHELNGKMVEVKRA 183
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+F+GG++W+T E ++ YF FGE++EAV++ D+ TGR++G+GFV F DP A +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 91 PAPVIDGRRANCNLA 105
IDGR A
Sbjct: 67 KHN-IDGRLVEAKKA 80
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%)
Query: 22 SPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDP 81
SP G K+FVGGL + YFEQFG + VV+ D NT R +G+GF+T+
Sbjct: 100 SPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSE 159
Query: 82 EAARRACADPAPVIDGRRANCNLA 105
EA + ++G+ A
Sbjct: 160 EAVEKVLLKTFHELNGKMVEVKRA 183
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D + K+F+ GLA +T +E +R F +G++ EA+VI DK TG+SKGYGFVTF + A
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGAL 130
Query: 86 RACADPAPVIDGRRANCNLAS 106
A +P+ IDGR LA+
Sbjct: 131 LALKEPSKKIDGRVTVTQLAA 151
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 18 QMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 77
Q S D + K++V + ++ ++ + +F +G++ E + DK TG+S+G+
Sbjct: 155 QGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFV 214
Query: 78 FRDPEAARRACADPAPVIDGRRANCNLA 105
++ E A+ A ADP VIDG+ NC LA
Sbjct: 215 YKTAEGAQAALADPVKVIDGKHLNCKLA 242
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D + K+F+ GLA +T +E +R F +G++ EA+VI DK TG+SKGYGFVTF + A
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGAL 130
Query: 86 RACADPAPVIDGRRANCNLAS 106
A +P+ IDGR LA+
Sbjct: 131 LALKEPSKKIDGRVTVTQLAA 151
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 18 QMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 77
Q S D + K++V + ++ ++ + +F +G++ E + DK TG+S+G+
Sbjct: 155 QGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFV 214
Query: 78 FRDPEAARRACADPAPVIDGRRANCNLA 105
++ E A+ A ADP VIDG+ NC LA
Sbjct: 215 YKTAEGAQAALADPVKVIDGKHLNCKLA 242
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%)
Query: 19 MVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 78
++ S D +FV G W+T E ++ FE +GEI E V+ DK+TGR KGYGFV F
Sbjct: 397 ILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456
Query: 79 RDPEAARRACADPAPVIDGRRANCNLAS 106
+ + AR A P + R CNLAS
Sbjct: 457 KTRKGAREALKRPEKRMYNRIVVCNLAS 484
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D K+FV GL W+T++ET+ F+Q+GEI + + DK +G+SKGYGF+ ++ AR
Sbjct: 136 DPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGAR 195
Query: 86 RACADPAPVIDGRRANCNLAS 106
A P I R C LAS
Sbjct: 196 NALKQPQKKIGSRMTACQLAS 216
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
+ T K++V + E + + +F +FGEI E + DK TGR KG+ ++ E+A+
Sbjct: 241 EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Query: 86 RACADPAPVIDGRRANCNLA 105
RA +P +G +C A
Sbjct: 301 RALEEPHKTFEGHILHCQKA 320
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D K+FV GL W+T++ET+ F+Q+GEI + + DK +G+SKGYGF+ ++ AR
Sbjct: 136 DPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGAR 195
Query: 86 RACADPAPVIDGRRANCNLAS 106
A P I R C LAS
Sbjct: 196 NALKQPQKKIGSRMTACQLAS 216
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
+ T K++V + E + + +F +FGEI E + DK TGR KG+ ++ E+A+
Sbjct: 241 EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Query: 86 RACADPAPVIDGRRANCNLA 105
RA +P +G +C A
Sbjct: 301 RALEEPHKTFEGHILHCQKA 320
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D K+FV GL W+T++ET+ F+Q+GEI + + DK +G+SKGYGF+ ++ AR
Sbjct: 136 DPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGAR 195
Query: 86 RACADPAPVIDGRRANCNLAS 106
A P I R C LAS
Sbjct: 196 NALKQPQKKIGSRMTACQLAS 216
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
+ T K++V + E + + +F +FGEI E + DK TGR KG+ ++ E+A+
Sbjct: 241 EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Query: 86 RACADPAPVIDGRRANCNLA 105
RA +P +G +C A
Sbjct: 301 RALEEPHKTFEGHILHCQKA 320
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D K+FV GL W+T++ET+ F+Q+GEI + + DK +G+SKGYGF+ ++ AR
Sbjct: 136 DPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGAR 195
Query: 86 RACADPAPVIDGRRANCNLAS 106
A P I R C LAS
Sbjct: 196 NALKQPQKKIGSRMTACQLAS 216
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
+ T K++V + E + + +F +FGEI E + DK TGR KG+ ++ E+A+
Sbjct: 241 EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Query: 86 RACADPAPVIDGRRANCNLA 105
RA +P +G +C A
Sbjct: 301 RALEEPHKTFEGHILHCQKA 320
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D K+FV GL W+T++ET+ F+Q+GEI + + DK +G+SKGYGF+ ++ AR
Sbjct: 136 DPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGAR 195
Query: 86 RACADPAPVIDGRRANCNLAS 106
A P I R C LAS
Sbjct: 196 NALKQPQKKIGSRMTACQLAS 216
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
+ T K++V + E + + +F +FGEI E + DK TGR KG+ ++ E+A+
Sbjct: 241 EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Query: 86 RACADPAPVIDGRRANCNLA 105
RA +P +G +C A
Sbjct: 301 RALEEPHKTFEGHILHCQKA 320
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+ FVGGLAW T E ++R F QFG+++++ +I D+ +GRS+G+GFVTF+D +A R A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 91 -PAPVIDGRRANCNLA 105
+DGR N A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+ FVGGLAW T E ++R F QFG+++++ +I D+ +GRS+G+GFVTF+D +A R A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 91 -PAPVIDGRRANCNLA 105
+DGR N A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 77.0 bits (188), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+ FVGGLAW T E ++R F QFG+++++ +I D+ +GRS+G+GFVTF+D +A R A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 91 -PAPVIDGRRANCNLA 105
+DGR N A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D K+FV GL W+T+++++ F+Q+GEI + + DK +G+SKGYGF+ F+ AR
Sbjct: 124 DLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGAR 183
Query: 86 RACADPAPVIDGRRANCNLAS 106
A P I R C LAS
Sbjct: 184 NALKQPQKKIGTRMTACQLAS 204
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K++V ++ + + + +F +FGEI E + DK TGR KG+ +R E+A++A +
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 91 PAPVIDGRRANCNLAS 106
P +G +C+ A+
Sbjct: 288 PHKTFEGHVLHCHKAN 303
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D K+FV GL W+T+++++ F+Q+GEI + + DK +G+SKGYGF+ F+ AR
Sbjct: 124 DLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGAR 183
Query: 86 RACADPAPVIDGRRANCNLAS 106
A P I R C LAS
Sbjct: 184 NALKQPQKKIGTRMTACQLAS 204
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K++V ++ + + + +F +FGEI E + DK TGR KG+ +R E+A++A +
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 91 PAPVIDGRRANCNLAS 106
P +G +C+ A+
Sbjct: 288 PHKTFEGHVLHCHKAN 303
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D++ +FV GL W+T E ++ FE +GEI E V+ DK+TGR+KG+GFV F+ + AR
Sbjct: 159 DSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGAR 218
Query: 86 RACADPAPVIDGRRANC 102
A +P + R +C
Sbjct: 219 AALKNPEKRMYNRTVSC 235
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 44/57 (77%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
+ FVGGLAW T E ++R F QFG+++++ +I D+ +GRS+G+GFVTF+D +A R A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
+K+FVGGL+W T ++++ F FGE+ EA VI D+ TGRS+G+GFV+F ++A A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 90 D-PAPVIDGRRANCNLAS 106
+ ++GR+ NLA+
Sbjct: 95 EMDGKELNGRQIRVNLAT 112
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
+K+FVGGL+W T ++++ F FGE+ EA VI D+ TGRS+G+GFV+F ++A A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 90 D-PAPVIDGRRANCNLAS 106
+ ++GR+ NLA+
Sbjct: 95 EMDGKELNGRQIRVNLAT 112
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGG++WET +ET YF +FGE++++V++TD+ TG +G+GFVTF D A + +
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 91 PAPVIDGRRANC 102
VID R+ +
Sbjct: 127 DH-VIDDRKVDL 137
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGL + + ++ YF +G+I+E ++ D +TGRS+G+GFVTF+ ++ R +D
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D+ K+FVGG++WET + +R +F +GE+ +A+V+ DK TGR +G+GFV F DP
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 86 RACADPAPVIDGRRANCNLA 105
R + ID R + A
Sbjct: 62 RVLQEKHS-IDTREVDVKRA 80
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEA 83
K+FVGGL E R+YFE +G + + ++ D+ T R +G+GFV+F +A
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDA 163
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+F+GG++W+T +R YF FGE+L+ V+ +K TGR +G+GFV F DP R D
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 91 PAPVIDGRRANCNLA 105
ID R + A
Sbjct: 67 KHH-IDNRDVDVKRA 80
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEA 83
K+FVGGL S+ R YFE +G + +AV++ D+ T R +G+GFV+F ++
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDS 163
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
TK+F+GGL+W T ++R F FG++++A VI D+ TGRS+G+GFV F D AA A +
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 90 DPAPVIDGRRAN 101
+ +DG+ N
Sbjct: 95 E----MDGKELN 102
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
TK+F+GGL+W T ++R F FG++++A VI D+ TGRS+G+GFV F D AA A +
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 90 DPAPVIDGRRAN 101
+ +DG+ N
Sbjct: 95 E----MDGKELN 102
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
TK+F+GGL+W T ++R F FG++++A VI D+ TGRS+G+GFV F D AA A +
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 90 DPAPVIDGRRAN 101
+ +DG+ N
Sbjct: 95 E----MDGKELN 102
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
TK+F+GGL+W T ++R F FG++++A VI D+ TGRS+G+GFV F D AA A +
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 90 DPAPVIDGRRAN 101
+ +DG+ N
Sbjct: 95 E----MDGKELN 102
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 25 GDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
GD + + FVGGLAW T + F Q+G+++++ +I D+ TGRS+G+GFVTF+D +A
Sbjct: 4 GDVEY-RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
Query: 85 RRACAD-PAPVIDGRRANCNLA 105
+ A +DGR N A
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 25 GDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
GD + + FVGGLAW T + F Q+G+++++ +I D+ TGRS+G+GFVTF+D +A
Sbjct: 4 GDVEY-RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
Query: 85 RRACAD-PAPVIDGRRANCNLA 105
+ A +DGR N A
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEA 84
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
+K+F+GG+A+ +++R F ++GE+++ VI D+ TGRS+G+GFVTF EAA A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI- 98
Query: 90 DPAPVIDGR 98
+DGR
Sbjct: 99 ---QALDGR 104
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
+K+FVGG+++ T +R F ++GE+++A +I D+ TGRS+G+ FVTF E A A
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 90 DPAPVIDGRRANCNLAS 106
+ GRR N A+
Sbjct: 94 LDGQDLHGRRIRVNYAT 110
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain
| chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
+ F+GGLAW T +R FE++G ++EA V+ DK +GRS+G+GF+TF + +A A A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+F+GGL +T + ++F ++GEI ++V++ D++TG+ +G+GF+TF DP + D
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 91 PAPVIDGRRANCN 103
VI+G++
Sbjct: 80 -THVINGKQVEIK 91
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D K+FVGG+ + ++ +F ++G ++E VI D T RS+G+GFV F D E
Sbjct: 105 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF-DSEEVV 163
Query: 86 RACADPAPVID 96
+ID
Sbjct: 164 DELLSKGNMID 174
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGG+A ET E +++YF ++G +LEAVV +K TG+ +G+GFV F + +A D
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 91 PAPV----IDGRRA 100
+ +D R+A
Sbjct: 67 THFILGKPVDVRKA 80
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGL+ T E + YFE+FG + VV+ D T R +G+GFVT+ ++
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 91 PAPVIDGRRANCNLA 105
+ +R A
Sbjct: 181 NFHELSDKRVEVKRA 195
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+F+GGL +T + ++F ++GEI ++V++ D++TG+ +G+GF+TF DP + D
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 91 PAPVIDGRRANC 102
VI+G++
Sbjct: 80 -THVINGKQVEI 90
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D K+FVGG+ + ++ +F ++G ++E VI D T RS+G+GFV F D E
Sbjct: 105 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF-DSEEVV 163
Query: 86 RACADPAPVID 96
+ID
Sbjct: 164 DELLSKGNMID 174
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC- 88
+K+FVGGL+ T E ++ F FG+I++AVV+ D+ +G S+G+GFVT+ E A A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 89 ADPAPVIDGR 98
A +DGR
Sbjct: 96 AMQNKELDGR 105
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
++FV GL+ T +E ++ F FG++++A VITD+++GRSKG+GFVT+ E A +A A+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 91 -PAPVIDG 97
A +DG
Sbjct: 95 MNAKFLDG 102
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVGGLA ET S ++F ++GEI ++V++ D+ TG+ +G+GFVT+ D + D
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 91 PAPVI 95
+I
Sbjct: 103 NHIII 107
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D K+FVGG+ + + +F QFGE+ E ++ D +TGRS+G+GFVT+ +
Sbjct: 126 DFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVD 185
Query: 86 RACA 89
A
Sbjct: 186 HLLA 189
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 39/54 (72%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEA 83
+++FVGGL+ E + R F +FG+IL+ ++ +++TGRS+G+GF+TF D A
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
++VF+GGL + E +R E+ GEI E ++ D+++G SKGY FV F+ + A++A
Sbjct: 96 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 155
Query: 90 D-PAPVIDGRRANCNLAS 106
+ + G+ C+L+
Sbjct: 156 ELHSKEFKGKTIRCSLSE 173
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 25 GDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
G + K+FVGGLA ++YF QFG I + VV+ D T R +G+GF+++ EA
Sbjct: 41 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 100
Query: 85 RRACADPAPVIDGRRANCNLA 105
+ ++G+ LA
Sbjct: 101 DKVLQKTFHELNGKMVEVKLA 121
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 40/58 (68%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 88
K+ V G+ W+ S+ ++ Y +FG++ + +V+ D++TGRS+G+G+VTF E A+ A
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 40/58 (68%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 88
K+ V G+ W+ S+ ++ Y +FG++ + +V+ D++TGRS+G+G+VTF E A+ A
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
++VF+GGL + E +R E+ GEI E ++ D+++G SKGY FV F+ + A++A
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 90 D-PAPVIDGRRANCNLAS 106
+ + G+ C+L+
Sbjct: 176 ELHSKEFKGKTIRCSLSE 193
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
++VF+GGL + E +R E+ GEI E ++ D+++G SKGY FV F+ + A++A
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 90 D-PAPVIDGRRANCNLAS 106
+ + G+ C+L+
Sbjct: 176 ELHSKEFKGKTIRCSLSE 193
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
++VF+GGL + E +R E+ GEI E ++ D+++G SKGY FV F+ + A++A
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 90 D--PAPVIDGRRANCNLA 105
+ ANC+L+
Sbjct: 176 ELHSKEFKASSTANCSLS 193
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA-CA 89
+V+VG L W+ + + + F + G+++EA V+ D+ TGRS+G+GFVT D + A A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 90 DPAPVIDGRRANCNLA 105
++GR N+A
Sbjct: 305 LDGQNLEGRAIRVNVA 320
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAA 84
K+F+ GL++ T +T+R FE FGE++E +I DK + RSKGY F+ + EAA
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAA 336
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 32 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD- 90
+FV G+++ + ET+ + F Q+G++L+ VI DK R KG+ +VTF E A +A +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 91 PAPVIDGR 98
A ++DGR
Sbjct: 83 NAQLVDGR 90
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 78
K+F+GGL+W ++++ F FGE+ E + DK +GRS+G+GFV F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
+++FVGGL+W+ + F+++G+I E ++ ++TGR +G+GF+TF D RR
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTD----RRGAD 67
Query: 90 DPAPVIDGR 98
D + GR
Sbjct: 68 DAIKHMHGR 76
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
+++FVGGL+W+ + F+++G+I E ++ ++TGR +G+GF+TF D RR
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTD----RRGAD 67
Query: 90 DPAPVIDGR 98
D + GR
Sbjct: 68 DAIKHMHGR 76
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
T +FV GL+ T SE +R F QFGE+ +A V+TD+ +G SKG+GFV + E + + A
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 41/58 (70%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
+K+F+GGL++ T + + F + G+++EA ++ D+ + RSKG+GFVTF + A++A
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 18 QMVNSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 77
Q +S T FT V+V LA T + ++ F ++G+I AVV+ D G+SKG+GFV
Sbjct: 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVN 261
Query: 78 FRDPEAARRAC 88
F + + A RA
Sbjct: 262 FENADDAARAV 272
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 26 DTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAAR 85
D F +++VG L W+ S + R F + G++++A V++D+ TGRS+G+GFV +
Sbjct: 204 DAAF-RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Query: 86 RACAD-PAPVIDGRRANCNLA 105
A A ++GR N+A
Sbjct: 263 VAIAALDGQNLEGRAIKVNVA 283
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVG L ++ S+ + FEQ G + + VI +++T +S+G+GFVT E A +A
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 91 -PAPVIDGRRANCNLAS 106
+ ++GRR N A+
Sbjct: 174 FNSFEVNGRRLTVNRAA 190
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
KV+ G L W S+ ++ F +L A VI ++NTGRS+G+GF++F E + A A
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 91 PAPV-IDGRRANCNLAS 106
V ++GR NLAS
Sbjct: 280 MNGVEVEGRALRLNLAS 296
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+FVG L+ E T+ + F F +A V+ D+ TGRS+G+GFV+FR+ + A+ A +
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 91 -PAPVIDGRRANCNLAS 106
+ R+ CN A+
Sbjct: 205 MNGKWLSSRQIRCNWAT 221
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 32 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD- 90
+FV L+ T +++R+ F FG+I EA +I D T R KG+GF+TF + AR+A
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 91 PAPVIDGR 98
++DGR
Sbjct: 69 DGKIVDGR 76
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
T+V+VG L+ T + +R F +G +++A+V+ D+ T RS+G+GFVT+ A A +
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 90 D-PAPVIDGRRANCNL 104
++GRR + L
Sbjct: 63 GMDGKELNGRRVSVKL 78
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
+V+VG L+W + F + G+++EA VI D+++GRSKG+GFVT+ + + A
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 90 D-PAPVIDGRRANCNLA 105
+DGR+ + A
Sbjct: 264 SLDGADLDGRQIRVSEA 280
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
+++VG L+W + F + G+++EA VI D+++GRSKG+GFVT + ++A
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 335
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
+++VG L+W + F + G+++EA VI D+++GRSKG+GFVT + ++A
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
+++VG L+W + F + G+++EA VI D+++GRSKG+GFVT + ++A
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
+++VG L+W + F + G+++EA VI D+++GRSKG+GFVT + ++A
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
K+FVG L+W SE++ F + G+++ A V+ D +TGRS+GYGFV + A
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 91 PAPV-IDGRRANCNLA 105
++GR NLA
Sbjct: 238 LDGFELEGRAIRVNLA 253
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
KV+VG L W TQ + +R +F +FG I+ V+ D+ TGR++ + F++F E A +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSF 272
Query: 91 PAPVIDGRR 99
+GRR
Sbjct: 273 NGTQYEGRR 281
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
KV+VG L W TQ + +R +F +FG I+ V+ D+ TGR++ + F++F E A +
Sbjct: 214 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSF 273
Query: 91 PAPVIDGRR 99
+GRR
Sbjct: 274 NGTQYEGRR 282
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
TK+++GGL+ T +++ F F + EA V+T+K TGRS+GYGFV F ++A A +
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 27 TTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARR 86
++ K+FVG + E +R YFEQ G +LE +I DK TG+ +G FV + + A R
Sbjct: 42 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 101
Query: 87 A 87
A
Sbjct: 102 A 102
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 27 TTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARR 86
++ K+FVG + E +R YFEQ G +LE +I DK TG+ +G FV + + A R
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 87 A 87
A
Sbjct: 177 A 177
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 90
+FVG L+ E + F F +A V+ D+ TGRS+G+GFV+FR+ + A+ A +
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 91 -PAPVIDGRRANCNLAS 106
+ R+ CN A+
Sbjct: 209 MNGKWVSSRQIRCNWAT 225
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 27 TTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARR 86
++ K+FVG + E +R YFEQ G +LE +I DK TG+ +G FV + + A R
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 87 A 87
A
Sbjct: 177 A 177
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 30 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 87
TK++V GL++ T +T+R FEQFG ++ ++ DK R KG+ F+ + E A +A
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKA 134
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 32 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADP 91
VFVG + ++ E +R + G ++ ++TD+ TG+ KGYGF ++D E A A +
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 92 AP-VIDGRRANCNLA 105
I+GR+ + A
Sbjct: 71 QSYEINGRQLRVDFA 85
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 31 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 89
++FVGGL + +R E FG + ++ D+ TG SKGY F ++DP ACA
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACA 434
>AT3G12640.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr3:4014455-4017675 FORWARD LENGTH=638
Length = 638
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 23 PFGDTTFTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPE 82
P D + +FV + + +++ R+F +FGE+L+A ++TD TG+ G ++ F E
Sbjct: 473 PLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKE 532
Query: 83 AARRACA 89
AA A +
Sbjct: 533 AAENALS 539
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 32 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADP 91
V+VGGL ++ E +RR F +G +L ++ D++ R K YGFVTF + RR+ D
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTF----SNRRSADDA 63
Query: 92 APVIDGR 98
+DG+
Sbjct: 64 IEDMDGK 70