Miyakogusa Predicted Gene

Lj1g3v3404340.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3404340.1 tr|G7J6G8|G7J6G8_MEDTR SWI/SNF complex subunit
SMARCC2 OS=Medicago truncatula GN=MTR_3g116120 PE=4
S,71.08,0,PREDICTED PROTEIN,NULL; SWI/SNF COMPLEX-RELATED,NULL;
SWIRM,SWIRM domain; Myb_DNA-binding,SANT/Myb d,CUFF.30634.1
         (476 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33610.1 | Symbols: ATSWI3B, CHB2, SWI3B | switch subunit 3 |...   440   e-124
AT2G47620.1 | Symbols: ATSWI3A, CHB1, SWI3A | SWITCH/sucrose non...   162   5e-40
AT1G21700.1 | Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose non...   139   5e-33
AT4G34430.2 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...   120   3e-27
AT4G34430.1 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...   120   3e-27
AT4G34430.4 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...   120   3e-27
AT4G34430.3 | Symbols: CHB3, ATSWI3D | DNA-binding family protei...   120   3e-27

>AT2G33610.1 | Symbols: ATSWI3B, CHB2, SWI3B | switch subunit 3 |
           chr2:14229023-14231149 FORWARD LENGTH=469
          Length = 469

 Score =  440 bits (1132), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/428 (53%), Positives = 294/428 (68%), Gaps = 16/428 (3%)

Query: 48  SATPDANVILVPSHSRWFSWDSIHQCEVRHLPEFFDS--SSKSPRVYKYYRNSIIKYFRY 105
           S++ D + I VPS+S WFSW  I+ CEVR LPEFFDS  SSK+P+ Y Y RNSIIK +R 
Sbjct: 40  SSSSDIDNIHVPSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYRD 99

Query: 106 NPNRKITFTDVRKMLVGDVGSIRRVFEFLEAWGLINYHPSSSFSKPFKWDDKD---TKVD 162
           +  RKI+FTDVR+ LV DV SIRRVF+FL++WGLINY+ S+S +KP KW++K+   +  D
Sbjct: 100 DHPRKISFTDVRRTLVSDVVSIRRVFDFLDSWGLINYNSSAS-AKPLKWEEKEAGKSAGD 158

Query: 163 SAEPPPPPVRETAKRVCSGCKALCTIACFVCDKYDLTLCARCYVRGNYRVGVSSSDFKRV 222
           +A  P   V+ETAKR C+GCKA+C+IACF CDKYDLTLCARCYVR NYRVG++SS+FKRV
Sbjct: 159 AASEPATTVKETAKRNCNGCKAICSIACFACDKYDLTLCARCYVRSNYRVGINSSEFKRV 218

Query: 223 EISXXXXXXXXXXXXLNLVEAISHYGDDWKRVSHQVVGRTEKECVAHFLKLPFGEQFLGS 282
           EIS            L L+EA+ HYGDDWK+V+  V+GRTEK+CV+ F+KLPFGEQF+  
Sbjct: 219 EISEESKPEWSDKEILLLLEAVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQFVKE 278

Query: 283 AVSDDGCELKQHADESETVAS-------AESNKRMRLTPLADASNPIMAQAAFLSALAGP 335
           + S+DG E+     +S+   S       +  NKR++LTPLADASNPIMAQAAFLSALAG 
Sbjct: 279 SDSEDGLEMFDQIKDSDIPESEGIDKDGSSPNKRIKLTPLADASNPIMAQAAFLSALAGT 338

Query: 336 EVXXXXXXXXXXXXSDVYKSTRINYRSLPKNTLQQDAGVASNGGNNSDSLQGARLNASLQ 395
            V            SDV      N    P    +QDA  AS+G    +  + A  +A   
Sbjct: 339 NVAEAAARAAVRALSDVDYEADKNASRDPN---RQDANAASSGETTRNESERAWADAKSL 395

Query: 396 LEKDESDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKERQQLEQTKNMFFLDQLTLLF 455
           +EK+E +VE AI E +EV+MK I+D++VHFE LDL ME+ R+QLE+ +N+ F+DQL + F
Sbjct: 396 IEKEEHEVEGAIKETVEVEMKKIRDRIVHFEKLDLEMERSRKQLEEVRNLLFVDQLNIFF 455

Query: 456 QKPSAPKT 463
               A KT
Sbjct: 456 HTRKARKT 463


>AT2G47620.1 | Symbols: ATSWI3A, CHB1, SWI3A | SWITCH/sucrose
           nonfermenting 3A | chr2:19532034-19534251 FORWARD
           LENGTH=512
          Length = 512

 Score =  162 bits (410), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 129/498 (25%), Positives = 215/498 (43%), Gaps = 103/498 (20%)

Query: 51  PDANVIL--VPSHSRWFSWDSIHQCEVRHLPEFFDSSS--KSPRVYKYYRNSIIKYFRYN 106
           P A + L  +P+ S WF WD IH+ E R   EFF  SS  ++P+VYK YR+ II  FR +
Sbjct: 6   PSAEIELYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFIINKFRED 65

Query: 107 PNRKITFTDVRKMLVGDVGSIRRVFEFLEAWGLINYHPSSSFSKPFKWDDKDTKVDSAE- 165
             R++TFT VRK LVGDV  +++VF FLE WGLIN      FS   K +D    VD+A+ 
Sbjct: 66  TCRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLIN------FSSSLKKNDHLLSVDNAKI 119

Query: 166 --------------------PPPPPVRETAKR------------------------VCSG 181
                                 PP V E  +                         VC+ 
Sbjct: 120 EQGTPAGIRVTATPNSLRPITAPPLVEERVETGIKVPPLTSYSDVFSDLKKPDHVLVCAH 179

Query: 182 CKALCTIACFVCDKYDLTLCARCYVRGNYRVGVSSSDFKRVEISXXXXXXXXXXXXLNLV 241
           C   C    +  +K  + +C +C+  GNY    ++ DFK   I             L L+
Sbjct: 180 CGERCDSPFYQHNKGIVNICEKCFKNGNYGENNTADDFKL--IGNSAAAVWTEEEILLLL 237

Query: 242 EAISHYGDDWKRVSHQVVGRTEKECVAHFLKLPFGEQFLGSA---------VSDDGCELK 292
           E++  +GDDW+ +S  V  ++  +C++  ++LPFGE  +GSA           D+  E  
Sbjct: 238 ESVLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLMGSASGRLNPSILTEDENTEQV 297

Query: 293 QHADESETVASAESN------------KRMRLTPLADASNPIMAQAAFLSALAGPEVXXX 340
           Q   +                      KR R+  +++  + +M Q A +++  GP V   
Sbjct: 298 QTDGQEHEETETREEKEDRVNEDEPPAKRKRVALISEGDSSLMKQVAAMASKVGPSVATA 357

Query: 341 XXXXXXXXXSD-------VYKSTRINYRSLPKNTLQQDAGVASNGGNNSDSLQG----AR 389
                     D       ++ +   +  ++ +   ++D  +        D  QG     R
Sbjct: 358 AAKAALAALCDEASCPKEIFDTDDYSNFTVDRANGEKDTDMEEQ-QEEKDGPQGLPVALR 416

Query: 390 LNASLQL-------------EKDESDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKER 436
           + AS+               +++E ++E+  + +IE Q+K +Q KL   +DL+ +M++E 
Sbjct: 417 IRASVATALGAAAAQAKILADQEEREMEQLAATVIEQQLKKLQSKLKFLDDLESIMDEEE 476

Query: 437 QQLEQTKNMFFLDQLTLL 454
           + +E  K     +++++L
Sbjct: 477 KVIEGVKETIIQERVSVL 494


>AT1G21700.1 | Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose
           nonfermenting 3C | chr1:7620156-7623978 REVERSE
           LENGTH=807
          Length = 807

 Score =  139 bits (349), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 124/506 (24%), Positives = 219/506 (43%), Gaps = 87/506 (17%)

Query: 55  VILVPSHSRWFSWDSIHQCEVRHLPEFFDSSS--KSPRVYKYYRNSIIKYFRYNPNRKIT 112
           V ++P HS WF+ +++ + E + +P+FF   S   +P  Y  +RN+I+  +  NP + +T
Sbjct: 175 VHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVSKYVENPEKTLT 234

Query: 113 FTDVRKMLVG-DVGSIRRVFEFLEAWGLINYHPSSSFSKPFKWDD-----KDTKVDSAEP 166
            +D + ++ G D+    RVF FL+ WG+INY  ++  S P    D     +DT  +   P
Sbjct: 235 ISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQ-SHPGPLRDVSDVREDTNGEVNVP 293

Query: 167 PP-------------PPVRETAKRVCSGCKAL---------------CTIACFVCD---- 194
                          P  R     V S   +L               C   C  C     
Sbjct: 294 SAALTSIDSLIKFDKPNCRHKGGEVYSSLPSLDGDSPDLDIRIREHLCDSHCNHCSRPLP 353

Query: 195 --------KYDLTLCARCYVRGNYRVGVSSSDFKRVE----ISXXXXXXXXXXXXLNLVE 242
                   K D+ LC  C+  G + VG S  DF RV+                  L L+E
Sbjct: 354 TVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKFYGDQDGDNWTDQETLLLLE 413

Query: 243 AISHYGDDWKRVSHQVVGRTEKECVAHFLKLPFGEQFLG----SAVSD-----DGCELKQ 293
           A+  Y ++W +++  V  +++ +C+ HFL+LP  +  L     S V++     +G + K 
Sbjct: 414 AVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLLDNVEVSGVTNTENPTNGYDHKG 473

Query: 294 HADESETVASAE--SNKRMRLTPLADASNPIMAQAAFLSALAGPEVXXXXXXXXXXXXS- 350
                +    +E  S+  ++L P   + NP+MA  AFL++  GP V            S 
Sbjct: 474 TDSNGDLPGYSEQGSDTEIKL-PFVKSPNPVMALVAFLASAVGPRVAASCAHESLSVLSE 532

Query: 351 -DVYKSTRINYRS---LPKNTLQQDAGVASNGGNNSDS----------------LQGARL 390
            D  KS  +  +    L     QQD    ++  N +++                L  A  
Sbjct: 533 DDRMKSEGMQGKEASLLDGENQQQDGAHKTSSQNGAEAQTPLPQDKVMAAFRAGLSAAAT 592

Query: 391 NASLQLEKDESDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKERQQLEQTKNMFFLDQ 450
            A L  + +E ++++  + I+  Q+K ++ KL  F +++ L+ KE +Q+E+T+  F  ++
Sbjct: 593 KAKLFADHEEREIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAER 652

Query: 451 LTLLFQKPSAPKTGEYPQGNHVKTTT 476
             +L  +  +P  G  PQ N+++  +
Sbjct: 653 ARMLSARFGSPG-GISPQTNNLQGMS 677


>AT4G34430.2 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
           chr4:16461069-16464993 FORWARD LENGTH=985
          Length = 985

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 149/330 (45%), Gaps = 61/330 (18%)

Query: 52  DANVILVPSHSRWFSWDSIHQCEVRHLPEFFDS--SSKSPRVYKYYRNSIIKYFRYNPNR 109
           D+NV +VP+H  WFSW+ IH  E R LP FF+     ++  VY+  RN I+  F  NPN 
Sbjct: 141 DSNVHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNI 200

Query: 110 KITFTDVRKMLVGDVGSIRRVFEFLEAWGLINYHP------SSSFSKPFKWDDKDT---- 159
           +I   D+ ++ VGD  + + V EFL+ WGLIN+HP       S+ S      DK++    
Sbjct: 201 QIELKDLTELEVGDSEAKQEVMEFLDYWGLINFHPFPPTDTGSTASDHDDLGDKESLLNS 260

Query: 160 ----KVDSAEPP-----------------PPP------VRETAKRV---CSGCKALCTIA 189
               +VD A PP                 P P      +++    V   C+ C A C+  
Sbjct: 261 LYRFQVDEACPPLVHKPRFTAQATPSGLFPDPMAADELLKQEGPAVEYHCNSCSADCSRK 320

Query: 190 CFVCDKY-DLTLCARCYVRGNYRVGVSSSD---FKRVEISXXXXXXXXXXXXLNLVEAIS 245
            + C K  D  LC  C+  G +   +SSSD    +  E              L L+EA+ 
Sbjct: 321 RYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALE 380

Query: 246 HYGDDWKRVSHQVVGRTEKECVAHFLKLPFGEQFLGS--------------AVS-DDGCE 290
            + ++W  ++  V  +T+ +C+ HFL++P  + FL                AVS DD   
Sbjct: 381 IFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQIDYKDPISKDTTDLAVSKDDNSV 440

Query: 291 LKQHADESETVASAESNKRMRLTPLADASN 320
           LK   +E+E     + ++ M+  P  +  N
Sbjct: 441 LKDAPEEAENKKRVDEDETMKEVPEPEDGN 470


>AT4G34430.1 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
           chr4:16461069-16464993 FORWARD LENGTH=985
          Length = 985

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 149/330 (45%), Gaps = 61/330 (18%)

Query: 52  DANVILVPSHSRWFSWDSIHQCEVRHLPEFFDS--SSKSPRVYKYYRNSIIKYFRYNPNR 109
           D+NV +VP+H  WFSW+ IH  E R LP FF+     ++  VY+  RN I+  F  NPN 
Sbjct: 141 DSNVHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNI 200

Query: 110 KITFTDVRKMLVGDVGSIRRVFEFLEAWGLINYHP------SSSFSKPFKWDDKDT---- 159
           +I   D+ ++ VGD  + + V EFL+ WGLIN+HP       S+ S      DK++    
Sbjct: 201 QIELKDLTELEVGDSEAKQEVMEFLDYWGLINFHPFPPTDTGSTASDHDDLGDKESLLNS 260

Query: 160 ----KVDSAEPP-----------------PPP------VRETAKRV---CSGCKALCTIA 189
               +VD A PP                 P P      +++    V   C+ C A C+  
Sbjct: 261 LYRFQVDEACPPLVHKPRFTAQATPSGLFPDPMAADELLKQEGPAVEYHCNSCSADCSRK 320

Query: 190 CFVCDKY-DLTLCARCYVRGNYRVGVSSSD---FKRVEISXXXXXXXXXXXXLNLVEAIS 245
            + C K  D  LC  C+  G +   +SSSD    +  E              L L+EA+ 
Sbjct: 321 RYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALE 380

Query: 246 HYGDDWKRVSHQVVGRTEKECVAHFLKLPFGEQFLGS--------------AVS-DDGCE 290
            + ++W  ++  V  +T+ +C+ HFL++P  + FL                AVS DD   
Sbjct: 381 IFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQIDYKDPISKDTTDLAVSKDDNSV 440

Query: 291 LKQHADESETVASAESNKRMRLTPLADASN 320
           LK   +E+E     + ++ M+  P  +  N
Sbjct: 441 LKDAPEEAENKKRVDEDETMKEVPEPEDGN 470


>AT4G34430.4 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
           chr4:16461069-16464993 FORWARD LENGTH=986
          Length = 986

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 149/330 (45%), Gaps = 61/330 (18%)

Query: 52  DANVILVPSHSRWFSWDSIHQCEVRHLPEFFDS--SSKSPRVYKYYRNSIIKYFRYNPNR 109
           D+NV +VP+H  WFSW+ IH  E R LP FF+     ++  VY+  RN I+  F  NPN 
Sbjct: 141 DSNVHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNI 200

Query: 110 KITFTDVRKMLVGDVGSIRRVFEFLEAWGLINYHP------SSSFSKPFKWDDKDT---- 159
           +I   D+ ++ VGD  + + V EFL+ WGLIN+HP       S+ S      DK++    
Sbjct: 201 QIELKDLTELEVGDSEAKQEVMEFLDYWGLINFHPFPPTDTGSTASDHDDLGDKESLLNS 260

Query: 160 ----KVDSAEPP-----------------PPP------VRETAKRV---CSGCKALCTIA 189
               +VD A PP                 P P      +++    V   C+ C A C+  
Sbjct: 261 LYRFQVDEACPPLVHKPRFTAQATPSGLFPDPMAADELLKQEGPAVEYHCNSCSADCSRK 320

Query: 190 CFVCDKY-DLTLCARCYVRGNYRVGVSSSD---FKRVEISXXXXXXXXXXXXLNLVEAIS 245
            + C K  D  LC  C+  G +   +SSSD    +  E              L L+EA+ 
Sbjct: 321 RYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALE 380

Query: 246 HYGDDWKRVSHQVVGRTEKECVAHFLKLPFGEQFLGS--------------AVS-DDGCE 290
            + ++W  ++  V  +T+ +C+ HFL++P  + FL                AVS DD   
Sbjct: 381 IFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQIDYKDPISKDTTDLAVSKDDNSV 440

Query: 291 LKQHADESETVASAESNKRMRLTPLADASN 320
           LK   +E+E     + ++ M+  P  +  N
Sbjct: 441 LKDAPEEAENKKRVDEDETMKEVPEPEDGN 470


>AT4G34430.3 | Symbols: CHB3, ATSWI3D | DNA-binding family protein |
           chr4:16461069-16464993 FORWARD LENGTH=983
          Length = 983

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 149/330 (45%), Gaps = 61/330 (18%)

Query: 52  DANVILVPSHSRWFSWDSIHQCEVRHLPEFFDS--SSKSPRVYKYYRNSIIKYFRYNPNR 109
           D+NV +VP+H  WFSW+ IH  E R LP FF+     ++  VY+  RN I+  F  NPN 
Sbjct: 141 DSNVHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNI 200

Query: 110 KITFTDVRKMLVGDVGSIRRVFEFLEAWGLINYHP------SSSFSKPFKWDDKDT---- 159
           +I   D+ ++ VGD  + + V EFL+ WGLIN+HP       S+ S      DK++    
Sbjct: 201 QIELKDLTELEVGDSEAKQEVMEFLDYWGLINFHPFPPTDTGSTASDHDDLGDKESLLNS 260

Query: 160 ----KVDSAEPP-----------------PPP------VRETAKRV---CSGCKALCTIA 189
               +VD A PP                 P P      +++    V   C+ C A C+  
Sbjct: 261 LYRFQVDEACPPLVHKPRFTAQATPSGLFPDPMAADELLKQEGPAVEYHCNSCSADCSRK 320

Query: 190 CFVCDKY-DLTLCARCYVRGNYRVGVSSSD---FKRVEISXXXXXXXXXXXXLNLVEAIS 245
            + C K  D  LC  C+  G +   +SSSD    +  E              L L+EA+ 
Sbjct: 321 RYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALE 380

Query: 246 HYGDDWKRVSHQVVGRTEKECVAHFLKLPFGEQFLGS--------------AVS-DDGCE 290
            + ++W  ++  V  +T+ +C+ HFL++P  + FL                AVS DD   
Sbjct: 381 IFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQIDYKDPISKDTTDLAVSKDDNSV 440

Query: 291 LKQHADESETVASAESNKRMRLTPLADASN 320
           LK   +E+E     + ++ M+  P  +  N
Sbjct: 441 LKDAPEEAENKKRVDEDETMKEVPEPEDGN 470