Miyakogusa Predicted Gene

Lj1g3v3404330.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3404330.1 tr|C1N088|C1N088_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_4148,36.48,1e-17,no description,Mog1/PsbP,
alpha/beta/alpha sandwich; PsbP,Photosystem II PsbP, oxygen evolving
compl,CUFF.30632.1
         (250 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76450.1 | Symbols:  | Photosystem II reaction center PsbP fa...   273   8e-74

>AT1G76450.1 | Symbols:  | Photosystem II reaction center PsbP
           family protein | chr1:28684618-28686109 FORWARD
           LENGTH=247
          Length = 247

 Score =  273 bits (698), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 132/233 (56%), Positives = 174/233 (74%), Gaps = 12/233 (5%)

Query: 29  SPPITLEHHKKTPCL---LSARNSSIEEGHAVN--------RRQLVFYTSLAAFAAAPST 77
           +P +T+   ++   +   +S  +SS EE H ++        RR ++   + + F   P  
Sbjct: 16  NPRVTITDSRRCSSISAAISVLDSSNEEQHRISSRDHVGMKRRDVMLQIASSVFFL-PLA 74

Query: 78  VLKALALNDVVEDVRIYIDDENKFKIEIPQDWEVGTGDSSGFKSLTAFYPKEASSSNVSV 137
           +  A A  +  E  R+Y D+ NKF+I IPQDW+VG  + +GFKS+TAFYP+E S+SNVS+
Sbjct: 75  ISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEPNGFKSITAFYPQETSTSNVSI 134

Query: 138 AITGLGPDFTKMESFGKVDEFAETLVSGLDRSWRKPPGVAAKLINSKSSKGIYYIEYSLQ 197
           AITGLGPDFT+MESFGKV+ FAETLVSGLDRSW+KP GV AKLI+S++SKG YYIEY+LQ
Sbjct: 135 AITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDSRASKGFYYIEYTLQ 194

Query: 198 NPGESRRHLYSAIGMATNGWYNRLYTVTGQYVEEETDKYASEIQKAVTSFKFI 250
           NPGE+R+HLYSAIGMATNGWYNRLYTVTGQ+ +EE+ + +S+IQK V SF+FI
Sbjct: 195 NPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKTVKSFRFI 247