Miyakogusa Predicted Gene

Lj1g3v3392210.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3392210.1 tr|F2NFK9|F2NFK9_DESAR Biotin/lipoate A/B protein
ligase OS=Desulfobacca acetoxidans (strain ATCC
70,30.38,1.1,seg,NULL,CUFF.32053.1
         (120 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20830.1 | Symbols: MCD1 | multiple chloroplast division site...   191   8e-50

>AT1G20830.1 | Symbols: MCD1 | multiple chloroplast division site 1
           | chr1:7242933-7244736 FORWARD LENGTH=349
          Length = 349

 Score =  191 bits (485), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 100/116 (86%)

Query: 1   MVKVGKSNSTVEMCGKVYRLAPVTLTQEQQTIHQKRRSRAYQWKRPTMFLKEGXXXXXXX 60
            VK+ K +STVEMCGKVYRLAPVTLT+++QTIHQKRRSRAYQWKRPT+FLKEG       
Sbjct: 182 FVKLDKGSSTVEMCGKVYRLAPVTLTEKEQTIHQKRRSRAYQWKRPTIFLKEGDSIPPDV 241

Query: 61  XXXTIRWIPANHPFATTATDLDEDLAQNNVRQKDGVPFRIQAEHEALQRKLEALQN 116
              T+RWIPANHPFATT +D+D+DLAQNNV QK GVPFRI+AEHEA+Q+KLEALQN
Sbjct: 242 DPDTVRWIPANHPFATTVSDIDQDLAQNNVYQKQGVPFRIRAEHEAMQKKLEALQN 297