Miyakogusa Predicted Gene

Lj1g3v3390050.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3390050.1 Non Chatacterized Hit- tr|I1JSS0|I1JSS0_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,72.05,0,seg,NULL,gene.g34715.t1.1
         (317 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20830.1 | Symbols: MCD1 | multiple chloroplast division site...   283   1e-76

>AT1G20830.1 | Symbols: MCD1 | multiple chloroplast division site 1
           | chr1:7242933-7244736 FORWARD LENGTH=349
          Length = 349

 Score =  283 bits (723), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 155/276 (56%), Positives = 191/276 (69%), Gaps = 9/276 (3%)

Query: 7   CPLISSSSRTSPHRIRIRNGISKWSSVVVTRTQQ--LKQDSINSITKFHHQLVGSVPIPP 64
           C  I  SS  +P    I+N  S  + VVVT T Q  +  DS  SI++F   +V ++P   
Sbjct: 53  CKAIGDSS--TPDE-DIQNTQSDDNVVVVTATTQSDIPHDSEYSISRFR-SMVTTLPPVV 108

Query: 65  FLLNRNAGNNFAIWXXXXXXXXXXXXXXXXM--SRKKERPGSVADLVRRGQLRS-DRRGI 121
           FL+ + + N+  I                 +  SR  +R GSVADLVRRGQLRS DRRGI
Sbjct: 109 FLMKKCSVNSIWIGVCITATVLVAAIRAYVVRKSRDNQRAGSVADLVRRGQLRSGDRRGI 168

Query: 122 SRPLKYEDPFNNPMVKVGKSNSTVEMCGKVYRLAPVTLTQEQQTIHQKRRSRAYQWKRPT 181
           S+ L YEDPFNNP VK+ K +STVEMCGKVYRLAPVTLT+++QTIHQKRRSRAYQWKRPT
Sbjct: 169 SKSLNYEDPFNNPFVKLDKGSSTVEMCGKVYRLAPVTLTEKEQTIHQKRRSRAYQWKRPT 228

Query: 182 MFLKEGXXXXXXXXXXTIRWITANHPFATTATDLDEDLAQNNVRQKDGVPFRIQAEHEAL 241
           +FLKEG          T+RWI ANHPFATT +D+D+DLAQNNV QK GVPFRI+AEHEA+
Sbjct: 229 IFLKEGDSIPPDVDPDTVRWIPANHPFATTVSDIDQDLAQNNVYQKQGVPFRIRAEHEAM 288

Query: 242 QRKLEALQNDPKLNKLVIDPTNSKEFERPLNSNARL 277
           Q+KLEALQN+ KLN L ID  N+++F+RP   +A+L
Sbjct: 289 QKKLEALQNEEKLNNLSIDSQNARDFQRPYKFSAKL 324