Miyakogusa Predicted Gene

Lj1g3v3388980.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3388980.1 Non Chatacterized Hit- tr|I1K7A2|I1K7A2_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,86.67,0.00000000000001,PROKAR_LIPOPROTEIN,NULL; coiled-coil,NULL;
seg,NULL; SUBFAMILY NOT NAMED,NULL; RIBOPHORIN I,Ribophor,CUFF.30689.1
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76400.1 | Symbols:  | Ribophorin I | chr1:28658713-28661672 ...   238   2e-63

>AT1G76400.1 | Symbols:  | Ribophorin I | chr1:28658713-28661672
           REVERSE LENGTH=614
          Length = 614

 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/182 (62%), Positives = 137/182 (75%)

Query: 1   MLREPLMLISGFFFLFVACIAYVHADFSISKSSASYLAKLQWEEVQATVRQIHNIISRCL 60
           +L EPLMLISGFF LF+ CI Y  AD SISKSS SYLAKLQW+EV AT++++ +I+ +CL
Sbjct: 433 LLSEPLMLISGFFILFITCIIYTRADISISKSSPSYLAKLQWDEVLATLQEVQSIVQKCL 492

Query: 61  TTHDKLEASLRDLSRTGDVQACKATRXXXXXXXXXXXXXXXXXXAFLQSSPQATPVLSKV 120
            THDKLEASLRDLSRTGD+Q CKA R                   FLQS P A+ +  KV
Sbjct: 493 ATHDKLEASLRDLSRTGDIQTCKAARKSTDSLLKDLSKELKPLLGFLQSFPSASHISPKV 552

Query: 121 EEIITKERDLQEKLMAKHSTVVDCYEKKLGGREIENRIASHQQKITALRQEIDDLMDVID 180
           EE++ KE++LQEKLMAKH+TVV+ YEKK  GR+IENRIAS QQKI ALRQEI+DL++ ID
Sbjct: 553 EELVVKEKELQEKLMAKHTTVVEGYEKKSSGRDIENRIASQQQKIIALRQEIEDLLEFID 612

Query: 181 EI 182
           EI
Sbjct: 613 EI 614