Miyakogusa Predicted Gene

Lj1g3v3385850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3385850.1 Non Chatacterized Hit- tr|J3M0S4|J3M0S4_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB04G2,40.94,0.00000000000002,seg,NULL,TC62369.path1.1
         (171 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33640.1 | Symbols:  | DHHC-type zinc finger family protein |...    65   2e-11

>AT2G33640.1 | Symbols:  | DHHC-type zinc finger family protein |
           chr2:14239500-14242240 FORWARD LENGTH=565
          Length = 565

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 70/156 (44%), Gaps = 41/156 (26%)

Query: 20  PDLNRDHFNPMYQQPSGNQSPSSAKESERNVNPVHENGARVPMRSNRLAIPENRRSSVFW 79
           P L RDHFNPMY     N+SP + +ES RN        A V  R N   +P +  SSV W
Sbjct: 438 PGLTRDHFNPMYMSSPANESPLNEEES-RN--------AVVAARRN---LPSSDESSVVW 485

Query: 80  DQAAGRFVXXXXXXXXXXXXXXTELLYTGRNIFFGSPVVNEQPTTGTRNSSSVVAGISDR 139
           D  AGRFV                    G ++  G P+ NE   T T          +DR
Sbjct: 486 DPEAGRFVSLSR--------------IPGTDV--GGPLGNECLNTITSTG-------TDR 522

Query: 140 DSMSRD------FQQGRSHRGAQLPVFVPGYSQQNK 169
              +R       FQQ RS RG QLPVF+P  SQ ++
Sbjct: 523 SRRARGNPLTGYFQQVRSQRGDQLPVFMPTDSQLHR 558