Miyakogusa Predicted Gene

Lj1g3v3385820.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3385820.1 Non Chatacterized Hit- tr|B9S263|B9S263_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,44.36,4e-18,coiled-coil,NULL; seg,NULL,CUFF.30603.1
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G42960.1 | Symbols:  | expressed protein localized to the inn...   132   8e-32
AT5G16660.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    52   1e-07
AT5G16660.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    48   3e-06

>AT1G42960.1 | Symbols:  | expressed protein localized to the inner
           membrane of the chloroplast. | chr1:16125863-16127080
           FORWARD LENGTH=168
          Length = 168

 Score =  132 bits (333), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 90/135 (66%), Gaps = 3/135 (2%)

Query: 33  LSQNLNCQGRTQLSL--TRRPLTVQATYSDGGRPXXXXXXXXXXXXXXXXXXXXXXXYAP 90
           +S  LN   +  +S   T+R LT+Q+ Y D                           YAP
Sbjct: 35  VSFGLNHSNKLHISAPRTKRILTIQSAYRDDDGSGSTGLFVGGFILGGLIVGALGCVYAP 94

Query: 91  QISKALAGADKKELMRKLPKFIYDEEKALEKTRKVLAEKIEQLNAAIDEVSSQLRSEDEG 150
           QISKA+AGAD+K+LMRKLPKFIYDEEKALEKTRKVLAEKI QLN+AID+VSSQL+SED  
Sbjct: 95  QISKAIAGADRKDLMRKLPKFIYDEEKALEKTRKVLAEKIAQLNSAIDDVSSQLKSEDT- 153

Query: 151 PNGVAVNSDELEAAA 165
           PNG A+++DE+EA A
Sbjct: 154 PNGAALSTDEIEATA 168


>AT5G16660.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane, chloroplast, membrane, chloroplast
           envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
           DURING: 14 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT3G02900.1);
           Has 30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr5:5465699-5467006
           REVERSE LENGTH=168
          Length = 168

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 50  RPLTVQATYSDGGRPXXXXXXXXXXXXXXXXXXXXXXXYAPQISKALAGADKKELMRKLP 109
           R  +V A Y DG R                        +APQI +++   + +    K P
Sbjct: 51  RKFSVSAGYRDGSRSGSSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEYGFEK-P 109

Query: 110 K--FIYDEEKALEKTRKVLAEKIEQLNAAIDEVSSQLRSEDEGPNG--VAVNSD-ELEA 163
           K    YDE   LEKTR+ L EKI QLN+AID VSS+LR  ++  +   V V +D E+EA
Sbjct: 110 KQPTYYDE--GLEKTRETLNEKIGQLNSAIDNVSSRLRGREKNTSSLNVPVETDPEVEA 166


>AT5G16660.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast,
           membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
           DURING: 14 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT3G02900.1);
           Has 106 Blast hits to 106 proteins in 32 species: Archae
           - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 78;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr5:5465699-5467006 REVERSE LENGTH=166
          Length = 166

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 8/81 (9%)

Query: 88  YAPQISKALAGADKKELMRKLPK--FIYDEEKALEKTRKVLAEKIEQLNAAIDEVSSQLR 145
           +APQI +++   + +    K PK    YDE   LEKTR+ L EKI QLN+AID VSS+LR
Sbjct: 87  FAPQIRRSVLNEEDEYGFEK-PKQPTYYDE--GLEKTRETLNEKIGQLNSAIDNVSSRLR 143

Query: 146 SEDEGPNG--VAVNSD-ELEA 163
             ++  +   V V +D E+EA
Sbjct: 144 GREKNTSSLNVPVETDPEVEA 164