Miyakogusa Predicted Gene

Lj1g3v3384780.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3384780.1 Non Chatacterized Hit- tr|D8TWF0|D8TWF0_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,35.8,8e-16,seg,NULL; DUF3456,Domain of unknown function DUF3456;
MIR-INTERACTING SAPOSIN-LIKE PROTEIN,NULL,CUFF.30619.1
         (187 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G42480.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   154   3e-38
AT1G42480.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   124   5e-29
AT1G42480.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   115   2e-26

>AT1G42480.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 24 plant structures; EXPRESSED
           DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
           Protein of unknown function DUF3456
           (InterPro:IPR021852); Has 177 Blast hits to 177 proteins
           in 59 species: Archae - 0; Bacteria - 0; Metazoa - 140;
           Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
           2 (source: NCBI BLink). | chr1:15936297-15938692 FORWARD
           LENGTH=182
          Length = 182

 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 106/147 (72%), Gaps = 2/147 (1%)

Query: 22  SNAIDDKCAACKAVAEELEIGLSREKPRNHLDMRHRLDSKGQRQGKLIDYRVSDLRVVEL 81
            +++DDKCAAC AVAEELE+ L +EKPRNHLDMR+RL+SKGQR+GK+IDYR+SDLRVV+L
Sbjct: 18  GSSVDDKCAACNAVAEELELQLLKEKPRNHLDMRNRLNSKGQREGKVIDYRISDLRVVDL 77

Query: 82  LDGLCEKMQDYTLM-IDTDTYEWFKVDSWDNLTKNKQEARAYSKDISSYCGRXXXXXXXX 140
           LDGLC++MQDYTL  ++    +W KV ++DNLT NKQEA+A++ DIS+YCGR        
Sbjct: 78  LDGLCDRMQDYTLQKVEPKNRQWVKVGNFDNLT-NKQEAKAHANDISTYCGRLLEETEDE 136

Query: 141 XXXXIXXXXXXXXXXXXXLCQDLSKHC 167
               I             LCQ LS HC
Sbjct: 137 LGEVIKNGSLKAGEVRKVLCQTLSNHC 163


>AT1G42480.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 24 plant structures; EXPRESSED
           DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
           Protein of unknown function DUF3456
           (InterPro:IPR021852); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr1:15936297-15937964 FORWARD LENGTH=145
          Length = 145

 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 82/95 (86%), Gaps = 1/95 (1%)

Query: 22  SNAIDDKCAACKAVAEELEIGLSREKPRNHLDMRHRLDSKGQRQGKLIDYRVSDLRVVEL 81
            +++DDKCAAC AVAEELE+ L +EKPRNHLDMR+RL+SKGQR+GK+IDYR+SDLRVV+L
Sbjct: 18  GSSVDDKCAACNAVAEELELQLLKEKPRNHLDMRNRLNSKGQREGKVIDYRISDLRVVDL 77

Query: 82  LDGLCEKMQDYTLM-IDTDTYEWFKVDSWDNLTKN 115
           LDGLC++MQDYTL  ++    +W KV ++DNLT N
Sbjct: 78  LDGLCDRMQDYTLQKVEPKNRQWVKVGNFDNLTSN 112


>AT1G42480.3 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 24 plant structures; EXPRESSED
           DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
           Protein of unknown function DUF3456
           (InterPro:IPR021852); Has 152 Blast hits to 152 proteins
           in 48 species: Archae - 0; Bacteria - 0; Metazoa - 113;
           Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes -
           2 (source: NCBI BLink). | chr1:15936297-15938692 FORWARD
           LENGTH=182
          Length = 182

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/148 (44%), Positives = 89/148 (60%), Gaps = 4/148 (2%)

Query: 22  SNAIDDKCAACKAVAEELEIGLSREKPRNHLDMRHRLDSKGQRQGKLIDYRV-SDLRVVE 80
            +++DDKCAAC AVAEELE+ L +   +    +   + +KG+   +L   RV SDLRVV+
Sbjct: 18  GSSVDDKCAACNAVAEELELQLLKASVKERSLITGAM-TKGKESDRLTLLRVISDLRVVD 76

Query: 81  LLDGLCEKMQDYTLM-IDTDTYEWFKVDSWDNLTKNKQEARAYSKDISSYCGRXXXXXXX 139
           LLDGLC++MQDYTL  ++    +W KV ++DNLT NKQEA+A++ DIS+YCGR       
Sbjct: 77  LLDGLCDRMQDYTLQKVEPKNRQWVKVGNFDNLT-NKQEAKAHANDISTYCGRLLEETED 135

Query: 140 XXXXXIXXXXXXXXXXXXXLCQDLSKHC 167
                I             LCQ LS HC
Sbjct: 136 ELGEVIKNGSLKAGEVRKVLCQTLSNHC 163