Miyakogusa Predicted Gene

Lj1g3v3384730.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3384730.1 Non Chatacterized Hit- tr|B9SU48|B9SU48_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,75.47,1e-16,HOMEOBOX_2,Homeodomain; no description,Homeodomain-like;
Homeobox,Homeodomain; Homeodomain,Homeodoma,CUFF.30596.1
         (218 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related ho...   213   1e-55
AT1G20700.1 | Symbols: WOX14, ATWOX14 | WUSCHEL related homeobox...   166   1e-41
AT1G20710.1 | Symbols: WOX10 | WUSCHEL related homeobox 10 | chr...   129   2e-30
AT5G45980.1 | Symbols: WOX8, STPL | WUSCHEL related homeobox 8 |...    71   6e-13
AT2G33880.1 | Symbols: WOX9, HB-3, STIP | homeobox-3 | chr2:1434...    69   2e-12
AT3G18010.1 | Symbols: WOX1 | WUSCHEL related homeobox 1 | chr3:...    68   4e-12
AT1G46480.1 | Symbols: WOX4 | WUSCHEL related homeobox 4 | chr1:...    64   1e-10
AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superf...    63   1e-10
AT5G05770.1 | Symbols: WOX7 | WUSCHEL related homeobox 7 | chr5:...    60   8e-10
AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3:...    60   1e-09
AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5:...    60   1e-09
AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like super...    59   2e-09
AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superf...    53   2e-07
AT5G17810.2 | Symbols: WOX12 | WUSCHEL related homeobox 12 | chr...    51   6e-07
AT5G17810.1 | Symbols: WOX12 | WUSCHEL related homeobox 12 | chr...    51   6e-07
AT3G03660.1 | Symbols: WOX11 | WUSCHEL related homeobox 11 | chr...    50   1e-06
AT3G03660.2 | Symbols: WOX11 | WUSCHEL related homeobox 11 | chr...    50   1e-06
AT5G46010.1 | Symbols:  | Homeodomain-like superfamily protein |...    50   1e-06

>AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related
           homeobox 13 | chr4:16875814-16877167 REVERSE LENGTH=268
          Length = 268

 Score =  213 bits (541), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/196 (56%), Positives = 134/196 (68%), Gaps = 12/196 (6%)

Query: 14  LYVKVMTDEQMELLRQQISVYATICDSLVEMHKAITTQQDLAGLRLGNLYCDPLMVCSGH 73
           +YVKVMTDEQ E LR+QI++Y TIC+ LVEMHK +T QQDLAG R+G LY DP+M   GH
Sbjct: 33  MYVKVMTDEQYETLRKQIAIYGTICERLVEMHKTLTAQQDLAGGRMGGLYADPMMSSLGH 92

Query: 74  KITARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRR 133
           K+TARQRWTPTP+QLQ+LE+IFDQG GTPSKQKIK+I  EL QHGQI+E NVYNWFQNRR
Sbjct: 93  KMTARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRR 152

Query: 134 ARSKRKQLAPTTPSHXXXXXXXXXXXXSPKEKRISAAESVQVLQPYENSSSPH------- 186
           ARSKRKQ    +  +            +  EKR+   ES+  L P  NS++         
Sbjct: 153 ARSKRKQHGGGSSGNNNGESEVETEVEALNEKRVVRPESLLGL-PDGNSNNNGLGTTTAT 211

Query: 187 ----RLKDFYIQSPDI 198
               R +D   QSP+I
Sbjct: 212 TTAPRPEDLCFQSPEI 227


>AT1G20700.1 | Symbols: WOX14, ATWOX14 | WUSCHEL related homeobox 14
           | chr1:7182558-7183866 FORWARD LENGTH=211
          Length = 211

 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/196 (47%), Positives = 126/196 (64%), Gaps = 19/196 (9%)

Query: 12  GGLYVKVMTDEQMELLRQQISVYATICDSLVEMHKAITTQQDLA-GLR-LGNLYCDPL-M 68
           G    +VMT+EQME+LR+QI+VYA ICD LV +H ++++   L+ G+R +   Y DP+  
Sbjct: 24  GAYSGRVMTEEQMEILRKQIAVYAVICDQLVLLHNSLSSYHPLSSGVRPMVGGYFDPMGA 83

Query: 69  VCSGHKITARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNW 128
             S H+I+ R RWTPT  QLQ+LE I+D+G+GTP++++I+EIA EL +HGQI+ETNVYNW
Sbjct: 84  SSSSHRISTRHRWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNW 143

Query: 129 FQNRRARSKRKQLAPTTPSHXXXXXXXXXXXXSPKEKRISAAESVQVLQPYENSSSPHRL 188
           FQNRRARSKRKQ   TT +                E+R S  +S   L+ YE+   P   
Sbjct: 144 FQNRRARSKRKQPQTTTANGQADDVAVTT------EERRSCGDS-GGLESYEHILFP--- 193

Query: 189 KDFYIQSPDIGFEQLL 204
                 SPD+G E LL
Sbjct: 194 ------SPDLGIEHLL 203


>AT1G20710.1 | Symbols: WOX10 | WUSCHEL related homeobox 10 |
           chr1:7184485-7185267 FORWARD LENGTH=197
          Length = 197

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 117/193 (60%), Gaps = 16/193 (8%)

Query: 17  KVMTDEQMELLRQQISVYATICDSLVEMHKAITTQQDLA-GLR-LGNLYCDPLMVCS-GH 73
           +VMTDEQME LR+QI++YA +CD LV +H ++++   L+ G+  +   Y DP++  S  H
Sbjct: 13  RVMTDEQMETLRKQIAIYAVLCDQLVFLHNSLSSVPLLSSGMNPMRGEYFDPMVASSSAH 72

Query: 74  KITARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRR 133
            ++ R RWTPT  QLQ+LE I+ +G+GTP+ ++IKEI +EL +HGQI E NVY+WFQNRR
Sbjct: 73  GMSTRPRWTPTTTQLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNRR 132

Query: 134 ARSKRKQLAPTTPSHXXXXXXXXXXXXSPKEKRISAAESVQVLQPYENSSSPHRLKDFYI 193
           ARSKRKQ     P+             +  E+R    +     + YE+   P        
Sbjct: 133 ARSKRKQ----PPTTTITSSQADDAAVTTTEERGRCGDDSGGFESYEHILFP-------- 180

Query: 194 QSPDIGFEQLLGK 206
            SPD+G E LL +
Sbjct: 181 -SPDLGIEHLLNR 192


>AT5G45980.1 | Symbols: WOX8, STPL | WUSCHEL related homeobox 8 |
           chr5:18648921-18650698 FORWARD LENGTH=325
          Length = 325

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query: 78  RQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSK 137
           + RW P P Q+++LE IF+ G   P +++I+ I I L ++GQI + NV+ WFQNR++R+K
Sbjct: 53  KPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAK 112

Query: 138 RK 139
            K
Sbjct: 113 HK 114


>AT2G33880.1 | Symbols: WOX9, HB-3, STIP | homeobox-3 |
           chr2:14341639-14343597 REVERSE LENGTH=378
          Length = 378

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 44/62 (70%)

Query: 78  RQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSK 137
           + RW P P Q+++LE IF+ G   P +++I+ I  +L ++GQ+ + NV+ WFQNR++RSK
Sbjct: 53  KPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 112

Query: 138 RK 139
            K
Sbjct: 113 HK 114


>AT3G18010.1 | Symbols: WOX1 | WUSCHEL related homeobox 1 |
           chr3:6161155-6163183 REVERSE LENGTH=350
          Length = 350

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 8/75 (10%)

Query: 66  PLMVCSGHKITARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNV 125
           P+MV S        RW PTP QL++LE+++ QG  TPS   I++I  +L ++G+I   NV
Sbjct: 70  PVMVSS--------RWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNV 121

Query: 126 YNWFQNRRARSKRKQ 140
           + WFQN +AR ++K+
Sbjct: 122 FYWFQNHKARERQKR 136


>AT1G46480.1 | Symbols: WOX4 | WUSCHEL related homeobox 4 |
           chr1:17236903-17237953 REVERSE LENGTH=251
          Length = 251

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 43/61 (70%)

Query: 80  RWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRK 139
           RW PT  Q+ +LE ++  G  TP+ Q+I+ I ++LG++G+I   NV+ WFQN +AR ++K
Sbjct: 90  RWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKARERQK 149

Query: 140 Q 140
           Q
Sbjct: 150 Q 150


>AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like
           superfamily protein | chr2:12262115-12263286 FORWARD
           LENGTH=244
          Length = 244

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 3/70 (4%)

Query: 76  TARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRAR 135
            A  RW PTP QL +LE+++  G  TP+  +I++I   L  +G+I   NV+ WFQN +AR
Sbjct: 4   VASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKAR 63

Query: 136 SK---RKQLA 142
            +   RK+LA
Sbjct: 64  DRQKLRKKLA 73


>AT5G05770.1 | Symbols: WOX7 | WUSCHEL related homeobox 7 |
           chr5:1734487-1734855 FORWARD LENGTH=122
          Length = 122

 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query: 80  RWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRK 139
           RW PT  Q+++L  +F  G  TPS  +I++I++EL  +G+I   NV+ WFQN +AR ++K
Sbjct: 29  RWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQNHKARERQK 88


>AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 |
           chr3:3527606-3528263 FORWARD LENGTH=182
          Length = 182

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%)

Query: 80  RWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRK 139
           RW PT  QL++L  +F  G  TP+  +I++I+ EL  +G+I   NV+ WFQN +AR ++K
Sbjct: 24  RWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQNHKARERQK 83

Query: 140 Q 140
           +
Sbjct: 84  R 84


>AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 |
           chr5:23933408-23934627 REVERSE LENGTH=260
          Length = 260

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 39/61 (63%)

Query: 80  RWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRK 139
           RW PT  Q+ +LE ++ +G  TPS  +I++I   L  +G I   NV+ WFQN +AR ++K
Sbjct: 14  RWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQK 73

Query: 140 Q 140
           Q
Sbjct: 74  Q 74


>AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like
           superfamily protein | chr2:224470-225997 REVERSE
           LENGTH=271
          Length = 271

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 40/58 (68%)

Query: 77  ARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRA 134
           A  RW PTP Q+  LE+++  G  TP+ ++I++IA +L ++G+I   NV+ WFQN +A
Sbjct: 58  ATLRWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKA 115


>AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like
           superfamily protein | chr2:7809100-7810671 REVERSE
           LENGTH=292
          Length = 292

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 8/80 (10%)

Query: 76  TARQ---RWTPTPLQLQMLEQIF-DQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQN 131
           T RQ   RWTPT  Q+++L++++ +    +P+  +I++I   L Q G+I   NV+ WFQN
Sbjct: 31  TCRQTSTRWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQN 90

Query: 132 RRARSKRKQ----LAPTTPS 147
            +AR ++K+       TTPS
Sbjct: 91  HKARERQKKRFNGTNMTTPS 110


>AT5G17810.2 | Symbols: WOX12 | WUSCHEL related homeobox 12 |
           chr5:5880576-5882602 REVERSE LENGTH=268
          Length = 268

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 77  ARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRR 133
            R RW+P P Q+ +LE IF+ G   P K +   I   L + G + + NV+ WFQNRR
Sbjct: 18  VRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRR 74


>AT5G17810.1 | Symbols: WOX12 | WUSCHEL related homeobox 12 |
           chr5:5880576-5882602 REVERSE LENGTH=268
          Length = 268

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 77  ARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRR 133
            R RW+P P Q+ +LE IF+ G   P K +   I   L + G + + NV+ WFQNRR
Sbjct: 18  VRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRR 74


>AT3G03660.1 | Symbols: WOX11 | WUSCHEL related homeobox 11 |
           chr3:889515-892162 REVERSE LENGTH=268
          Length = 268

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 77  ARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRR 133
            R RW+P P Q+ +LE IF  G   P K++   I   L + G + + NV+ WFQNRR
Sbjct: 30  VRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQNRR 86


>AT3G03660.2 | Symbols: WOX11 | WUSCHEL related homeobox 11 |
           chr3:889515-892162 REVERSE LENGTH=297
          Length = 297

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 77  ARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRR 133
            R RW+P P Q+ +LE IF  G   P K++   I   L + G + + NV+ WFQNRR
Sbjct: 30  VRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQNRR 86


>AT5G46010.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:18660584-18661183 FORWARD LENGTH=122
          Length = 122

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 78  RQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHG-QISETNVYNWFQNRRARS 136
           +  W P   Q Q+LE++F  G   PS   IK+I I+L  +G ++ + +VY WF NR+   
Sbjct: 52  KPEWKPNQHQAQILEELFIGGTVNPSLTSIKQITIKLQSYGEEVDDADVYKWFHNRKYSR 111

Query: 137 KRKQLA 142
           K K ++
Sbjct: 112 KPKLVS 117