Miyakogusa Predicted Gene

Lj1g3v3382460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3382460.1 Non Chatacterized Hit- tr|F6HPY1|F6HPY1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,94.37,2e-19,RS25A_ARATH_Q9SIK2;,Ribosomal protein S25; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,Ribosomal prot,CUFF.30602.1
         (108 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21580.2 | Symbols:  | Ribosomal protein S25 family protein |...   138   6e-34
AT2G21580.1 | Symbols:  | Ribosomal protein S25 family protein |...   138   6e-34
AT4G39200.2 | Symbols:  | Ribosomal protein S25 family protein |...   135   4e-33
AT4G39200.1 | Symbols:  | Ribosomal protein S25 family protein |...   135   4e-33
AT4G34555.1 | Symbols:  | Ribosomal protein S25 family protein |...   135   4e-33
AT2G16360.1 | Symbols:  | Ribosomal protein S25 family protein |...   129   4e-31

>AT2G21580.2 | Symbols:  | Ribosomal protein S25 family protein |
           chr2:9236629-9237510 FORWARD LENGTH=107
          Length = 107

 Score =  138 bits (348), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 64/72 (88%), Positives = 71/72 (98%)

Query: 37  VNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRVNGSLARKAIRELMARGSIRMVSSH 96
           VNNMVLFDQGTYDKLL+EAPKFKLITPSILSDR+R+NGSLAR+AIRELMA+G IRMVS+H
Sbjct: 36  VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAH 95

Query: 97  ASQQIYTRATNT 108
           +SQQIYTRATNT
Sbjct: 96  SSQQIYTRATNT 107


>AT2G21580.1 | Symbols:  | Ribosomal protein S25 family protein |
           chr2:9236629-9237510 FORWARD LENGTH=108
          Length = 108

 Score =  138 bits (348), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 64/72 (88%), Positives = 71/72 (98%)

Query: 37  VNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRVNGSLARKAIRELMARGSIRMVSSH 96
           VNNMVLFDQGTYDKLL+EAPKFKLITPSILSDR+R+NGSLAR+AIRELMA+G IRMVS+H
Sbjct: 37  VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAH 96

Query: 97  ASQQIYTRATNT 108
           +SQQIYTRATNT
Sbjct: 97  SSQQIYTRATNT 108


>AT4G39200.2 | Symbols:  | Ribosomal protein S25 family protein |
           chr4:18257464-18258464 FORWARD LENGTH=107
          Length = 107

 Score =  135 bits (341), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 62/72 (86%), Positives = 70/72 (97%)

Query: 37  VNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRVNGSLARKAIRELMARGSIRMVSSH 96
           VNNMVLFDQ TYDKLL+EAPKFKLITPSILSDR+R+NGSLAR+AIRELMA+G IRMV++H
Sbjct: 36  VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAH 95

Query: 97  ASQQIYTRATNT 108
           +SQQIYTRATNT
Sbjct: 96  SSQQIYTRATNT 107


>AT4G39200.1 | Symbols:  | Ribosomal protein S25 family protein |
           chr4:18257464-18258464 FORWARD LENGTH=108
          Length = 108

 Score =  135 bits (341), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 62/72 (86%), Positives = 70/72 (97%)

Query: 37  VNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRVNGSLARKAIRELMARGSIRMVSSH 96
           VNNMVLFDQ TYDKLL+EAPKFKLITPSILSDR+R+NGSLAR+AIRELMA+G IRMV++H
Sbjct: 37  VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAH 96

Query: 97  ASQQIYTRATNT 108
           +SQQIYTRATNT
Sbjct: 97  SSQQIYTRATNT 108


>AT4G34555.1 | Symbols:  | Ribosomal protein S25 family protein |
           chr4:16504381-16505339 REVERSE LENGTH=108
          Length = 108

 Score =  135 bits (341), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/71 (88%), Positives = 70/71 (98%)

Query: 37  VNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRVNGSLARKAIRELMARGSIRMVSSH 96
           VNNMVLFDQ TYDKLLSEAPKFKLITPSILSDRLR+NGSLAR+AIRELMA+G+IRMVS+H
Sbjct: 37  VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAH 96

Query: 97  ASQQIYTRATN 107
           +SQQIYTRAT+
Sbjct: 97  SSQQIYTRATH 107


>AT2G16360.1 | Symbols:  | Ribosomal protein S25 family protein |
           chr2:7076713-7077366 REVERSE LENGTH=125
          Length = 125

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/70 (85%), Positives = 67/70 (95%)

Query: 37  VNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRVNGSLARKAIRELMARGSIRMVSSH 96
           VNNMVLFDQ TYDKL+SEAPKFKLITPSILSDRLR+NGSLARKAIR+LM +G+IRMVS+H
Sbjct: 53  VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTH 112

Query: 97  ASQQIYTRAT 106
           +SQQI TRAT
Sbjct: 113 SSQQINTRAT 122