Miyakogusa Predicted Gene
- Lj1g3v3381250.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3381250.1 Non Chatacterized Hit- tr|H9VTW9|H9VTW9_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda GN=0,43.17,3e-17,no
description,Zinc finger, RING/FYVE/PHD-type; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; ZF_,CUFF.30567.1
(430 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G39140.5 | Symbols: | RING/U-box superfamily protein | chr4:... 238 7e-63
AT4G39140.4 | Symbols: | RING/U-box superfamily protein | chr4:... 238 7e-63
AT4G39140.3 | Symbols: | RING/U-box superfamily protein | chr4:... 238 7e-63
AT4G39140.2 | Symbols: | RING/U-box superfamily protein | chr4:... 238 7e-63
AT4G39140.1 | Symbols: | RING/U-box superfamily protein | chr4:... 238 7e-63
AT2G21500.1 | Symbols: | RING/U-box superfamily protein | chr2:... 231 6e-61
AT2G21500.2 | Symbols: | RING/U-box superfamily protein | chr2:... 231 6e-61
AT1G75400.1 | Symbols: | RING/U-box superfamily protein | chr1:... 196 2e-50
AT1G19680.1 | Symbols: | RING/U-box superfamily protein | chr1:... 188 6e-48
AT5G18260.1 | Symbols: | RING/U-box superfamily protein | chr5:... 58 1e-08
AT1G14180.1 | Symbols: | RING/U-box superfamily protein | chr1:... 57 3e-08
AT1G14180.2 | Symbols: | RING/U-box superfamily protein | chr1:... 56 4e-08
>AT4G39140.5 | Symbols: | RING/U-box superfamily protein |
chr4:18229637-18231282 REVERSE LENGTH=429
Length = 429
Score = 238 bits (606), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 169/454 (37%), Positives = 229/454 (50%), Gaps = 51/454 (11%)
Query: 1 MGAACCVAAKDKTVQSGSTS-EVLHR-NTRCSPTWSFRWDHRGGRVAGEDTSINWFSDGI 58
MG ACCVAA+DK V S++ E L R N R SP+WSFRWD+RG RVAGE+TS++W SDGI
Sbjct: 1 MGNACCVAARDKMVVPNSSAGENLQRSNIRHSPSWSFRWDNRG-RVAGEETSLSWLSDGI 59
Query: 59 SRNDGSENKNESAYVSEDGSPLQNYQRNRCLKSPISEGTNVHVRNSPTDQSISRTVSMDM 118
SRNDGSE K ESA+VS +GSPL +++ KSP S D S R SM+
Sbjct: 60 SRNDGSEIKFESAFVSSEGSPLDSFRTQTLQKSPAS------------DLSFPRNSSMNT 107
Query: 119 NVEQGNEL-TESS----IVXXXXXXXXXXXXXXXXXXXXXXQCHMLP---SSLTPSRWPY 170
EQ + TES+ + Q ++ P S+L ++ P
Sbjct: 108 VFEQKENVSTESAAPSYLSPAQLSLSLASQPSSFPTSPLSSQSYLHPASSSTLKLTQHP- 166
Query: 171 RSPGHQLLRQASDSRIPAYKSPSRFSLSEERPMFPTWSNESGMRSHGGSSDGWSIPGFPE 230
+L +Q SD +I S SR S +EER PT + S G S+GWS+ F E
Sbjct: 167 -----RLSKQVSDGQIYGQNSLSRSSATEERQGTPTRYDSS----QSGPSEGWSLQAFSE 217
Query: 231 MTGTPHRDRW----SFDSESFSFNRERLARSRSWLSAFSPVDLQTCGVCSKLLTEMS--- 283
M + ++ ++D++ F R+++ + +S TCG CS+ L+E S
Sbjct: 218 MMSSSRSNKALSYDNYDNDCFGLQRDKIDHHGNRMSKH---QQHTCGACSRPLSEKSLWS 274
Query: 284 ----WRSNNLSVVAVLICGHVYHAECLESMTHDINKYDPACPVCTFGXXXXXXXXXXXXX 339
+ +N LSV A+L CGHVYH ECLE MT +I+K+DP+CP+CT G
Sbjct: 275 SQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICTMGEKKTAKLSEKALK 334
Query: 340 XXXDVKAR-NKKSKNRXXXXXXXXXXXXXXHXX--XXXXXXXXPRADXXXXXXXXXXXPF 396
D+KAR NK+ +NR PR PF
Sbjct: 335 VEMDLKARHNKRLRNRVLDSDFDCDDFVMFDHSHRTAAAASKSPRLVSSSSAKSYSAKPF 394
Query: 397 LRRHFTFGSKGS-RSMLDNHPTRKKGFFWAKSSK 429
L RHF+FGS+ + +S +N P +KKGFFW KSSK
Sbjct: 395 LARHFSFGSRSNYKSPKENLPVKKKGFFWTKSSK 428
>AT4G39140.4 | Symbols: | RING/U-box superfamily protein |
chr4:18229637-18231282 REVERSE LENGTH=429
Length = 429
Score = 238 bits (606), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 169/454 (37%), Positives = 229/454 (50%), Gaps = 51/454 (11%)
Query: 1 MGAACCVAAKDKTVQSGSTS-EVLHR-NTRCSPTWSFRWDHRGGRVAGEDTSINWFSDGI 58
MG ACCVAA+DK V S++ E L R N R SP+WSFRWD+RG RVAGE+TS++W SDGI
Sbjct: 1 MGNACCVAARDKMVVPNSSAGENLQRSNIRHSPSWSFRWDNRG-RVAGEETSLSWLSDGI 59
Query: 59 SRNDGSENKNESAYVSEDGSPLQNYQRNRCLKSPISEGTNVHVRNSPTDQSISRTVSMDM 118
SRNDGSE K ESA+VS +GSPL +++ KSP S D S R SM+
Sbjct: 60 SRNDGSEIKFESAFVSSEGSPLDSFRTQTLQKSPAS------------DLSFPRNSSMNT 107
Query: 119 NVEQGNEL-TESS----IVXXXXXXXXXXXXXXXXXXXXXXQCHMLP---SSLTPSRWPY 170
EQ + TES+ + Q ++ P S+L ++ P
Sbjct: 108 VFEQKENVSTESAAPSYLSPAQLSLSLASQPSSFPTSPLSSQSYLHPASSSTLKLTQHP- 166
Query: 171 RSPGHQLLRQASDSRIPAYKSPSRFSLSEERPMFPTWSNESGMRSHGGSSDGWSIPGFPE 230
+L +Q SD +I S SR S +EER PT + S G S+GWS+ F E
Sbjct: 167 -----RLSKQVSDGQIYGQNSLSRSSATEERQGTPTRYDSS----QSGPSEGWSLQAFSE 217
Query: 231 MTGTPHRDRW----SFDSESFSFNRERLARSRSWLSAFSPVDLQTCGVCSKLLTEMS--- 283
M + ++ ++D++ F R+++ + +S TCG CS+ L+E S
Sbjct: 218 MMSSSRSNKALSYDNYDNDCFGLQRDKIDHHGNRMSKH---QQHTCGACSRPLSEKSLWS 274
Query: 284 ----WRSNNLSVVAVLICGHVYHAECLESMTHDINKYDPACPVCTFGXXXXXXXXXXXXX 339
+ +N LSV A+L CGHVYH ECLE MT +I+K+DP+CP+CT G
Sbjct: 275 SQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICTMGEKKTAKLSEKALK 334
Query: 340 XXXDVKAR-NKKSKNRXXXXXXXXXXXXXXHXX--XXXXXXXXPRADXXXXXXXXXXXPF 396
D+KAR NK+ +NR PR PF
Sbjct: 335 VEMDLKARHNKRLRNRVLDSDFDCDDFVMFDHSHRTAAAASKSPRLVSSSSAKSYSAKPF 394
Query: 397 LRRHFTFGSKGS-RSMLDNHPTRKKGFFWAKSSK 429
L RHF+FGS+ + +S +N P +KKGFFW KSSK
Sbjct: 395 LARHFSFGSRSNYKSPKENLPVKKKGFFWTKSSK 428
>AT4G39140.3 | Symbols: | RING/U-box superfamily protein |
chr4:18229637-18231282 REVERSE LENGTH=429
Length = 429
Score = 238 bits (606), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 169/454 (37%), Positives = 229/454 (50%), Gaps = 51/454 (11%)
Query: 1 MGAACCVAAKDKTVQSGSTS-EVLHR-NTRCSPTWSFRWDHRGGRVAGEDTSINWFSDGI 58
MG ACCVAA+DK V S++ E L R N R SP+WSFRWD+RG RVAGE+TS++W SDGI
Sbjct: 1 MGNACCVAARDKMVVPNSSAGENLQRSNIRHSPSWSFRWDNRG-RVAGEETSLSWLSDGI 59
Query: 59 SRNDGSENKNESAYVSEDGSPLQNYQRNRCLKSPISEGTNVHVRNSPTDQSISRTVSMDM 118
SRNDGSE K ESA+VS +GSPL +++ KSP S D S R SM+
Sbjct: 60 SRNDGSEIKFESAFVSSEGSPLDSFRTQTLQKSPAS------------DLSFPRNSSMNT 107
Query: 119 NVEQGNEL-TESS----IVXXXXXXXXXXXXXXXXXXXXXXQCHMLP---SSLTPSRWPY 170
EQ + TES+ + Q ++ P S+L ++ P
Sbjct: 108 VFEQKENVSTESAAPSYLSPAQLSLSLASQPSSFPTSPLSSQSYLHPASSSTLKLTQHP- 166
Query: 171 RSPGHQLLRQASDSRIPAYKSPSRFSLSEERPMFPTWSNESGMRSHGGSSDGWSIPGFPE 230
+L +Q SD +I S SR S +EER PT + S G S+GWS+ F E
Sbjct: 167 -----RLSKQVSDGQIYGQNSLSRSSATEERQGTPTRYDSS----QSGPSEGWSLQAFSE 217
Query: 231 MTGTPHRDRW----SFDSESFSFNRERLARSRSWLSAFSPVDLQTCGVCSKLLTEMS--- 283
M + ++ ++D++ F R+++ + +S TCG CS+ L+E S
Sbjct: 218 MMSSSRSNKALSYDNYDNDCFGLQRDKIDHHGNRMSKH---QQHTCGACSRPLSEKSLWS 274
Query: 284 ----WRSNNLSVVAVLICGHVYHAECLESMTHDINKYDPACPVCTFGXXXXXXXXXXXXX 339
+ +N LSV A+L CGHVYH ECLE MT +I+K+DP+CP+CT G
Sbjct: 275 SQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICTMGEKKTAKLSEKALK 334
Query: 340 XXXDVKAR-NKKSKNRXXXXXXXXXXXXXXHXX--XXXXXXXXPRADXXXXXXXXXXXPF 396
D+KAR NK+ +NR PR PF
Sbjct: 335 VEMDLKARHNKRLRNRVLDSDFDCDDFVMFDHSHRTAAAASKSPRLVSSSSAKSYSAKPF 394
Query: 397 LRRHFTFGSKGS-RSMLDNHPTRKKGFFWAKSSK 429
L RHF+FGS+ + +S +N P +KKGFFW KSSK
Sbjct: 395 LARHFSFGSRSNYKSPKENLPVKKKGFFWTKSSK 428
>AT4G39140.2 | Symbols: | RING/U-box superfamily protein |
chr4:18229637-18231282 REVERSE LENGTH=429
Length = 429
Score = 238 bits (606), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 169/454 (37%), Positives = 229/454 (50%), Gaps = 51/454 (11%)
Query: 1 MGAACCVAAKDKTVQSGSTS-EVLHR-NTRCSPTWSFRWDHRGGRVAGEDTSINWFSDGI 58
MG ACCVAA+DK V S++ E L R N R SP+WSFRWD+RG RVAGE+TS++W SDGI
Sbjct: 1 MGNACCVAARDKMVVPNSSAGENLQRSNIRHSPSWSFRWDNRG-RVAGEETSLSWLSDGI 59
Query: 59 SRNDGSENKNESAYVSEDGSPLQNYQRNRCLKSPISEGTNVHVRNSPTDQSISRTVSMDM 118
SRNDGSE K ESA+VS +GSPL +++ KSP S D S R SM+
Sbjct: 60 SRNDGSEIKFESAFVSSEGSPLDSFRTQTLQKSPAS------------DLSFPRNSSMNT 107
Query: 119 NVEQGNEL-TESS----IVXXXXXXXXXXXXXXXXXXXXXXQCHMLP---SSLTPSRWPY 170
EQ + TES+ + Q ++ P S+L ++ P
Sbjct: 108 VFEQKENVSTESAAPSYLSPAQLSLSLASQPSSFPTSPLSSQSYLHPASSSTLKLTQHP- 166
Query: 171 RSPGHQLLRQASDSRIPAYKSPSRFSLSEERPMFPTWSNESGMRSHGGSSDGWSIPGFPE 230
+L +Q SD +I S SR S +EER PT + S G S+GWS+ F E
Sbjct: 167 -----RLSKQVSDGQIYGQNSLSRSSATEERQGTPTRYDSS----QSGPSEGWSLQAFSE 217
Query: 231 MTGTPHRDRW----SFDSESFSFNRERLARSRSWLSAFSPVDLQTCGVCSKLLTEMS--- 283
M + ++ ++D++ F R+++ + +S TCG CS+ L+E S
Sbjct: 218 MMSSSRSNKALSYDNYDNDCFGLQRDKIDHHGNRMSKH---QQHTCGACSRPLSEKSLWS 274
Query: 284 ----WRSNNLSVVAVLICGHVYHAECLESMTHDINKYDPACPVCTFGXXXXXXXXXXXXX 339
+ +N LSV A+L CGHVYH ECLE MT +I+K+DP+CP+CT G
Sbjct: 275 SQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICTMGEKKTAKLSEKALK 334
Query: 340 XXXDVKAR-NKKSKNRXXXXXXXXXXXXXXHXX--XXXXXXXXPRADXXXXXXXXXXXPF 396
D+KAR NK+ +NR PR PF
Sbjct: 335 VEMDLKARHNKRLRNRVLDSDFDCDDFVMFDHSHRTAAAASKSPRLVSSSSAKSYSAKPF 394
Query: 397 LRRHFTFGSKGS-RSMLDNHPTRKKGFFWAKSSK 429
L RHF+FGS+ + +S +N P +KKGFFW KSSK
Sbjct: 395 LARHFSFGSRSNYKSPKENLPVKKKGFFWTKSSK 428
>AT4G39140.1 | Symbols: | RING/U-box superfamily protein |
chr4:18229637-18231282 REVERSE LENGTH=429
Length = 429
Score = 238 bits (606), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 169/454 (37%), Positives = 229/454 (50%), Gaps = 51/454 (11%)
Query: 1 MGAACCVAAKDKTVQSGSTS-EVLHR-NTRCSPTWSFRWDHRGGRVAGEDTSINWFSDGI 58
MG ACCVAA+DK V S++ E L R N R SP+WSFRWD+RG RVAGE+TS++W SDGI
Sbjct: 1 MGNACCVAARDKMVVPNSSAGENLQRSNIRHSPSWSFRWDNRG-RVAGEETSLSWLSDGI 59
Query: 59 SRNDGSENKNESAYVSEDGSPLQNYQRNRCLKSPISEGTNVHVRNSPTDQSISRTVSMDM 118
SRNDGSE K ESA+VS +GSPL +++ KSP S D S R SM+
Sbjct: 60 SRNDGSEIKFESAFVSSEGSPLDSFRTQTLQKSPAS------------DLSFPRNSSMNT 107
Query: 119 NVEQGNEL-TESS----IVXXXXXXXXXXXXXXXXXXXXXXQCHMLP---SSLTPSRWPY 170
EQ + TES+ + Q ++ P S+L ++ P
Sbjct: 108 VFEQKENVSTESAAPSYLSPAQLSLSLASQPSSFPTSPLSSQSYLHPASSSTLKLTQHP- 166
Query: 171 RSPGHQLLRQASDSRIPAYKSPSRFSLSEERPMFPTWSNESGMRSHGGSSDGWSIPGFPE 230
+L +Q SD +I S SR S +EER PT + S G S+GWS+ F E
Sbjct: 167 -----RLSKQVSDGQIYGQNSLSRSSATEERQGTPTRYDSS----QSGPSEGWSLQAFSE 217
Query: 231 MTGTPHRDRW----SFDSESFSFNRERLARSRSWLSAFSPVDLQTCGVCSKLLTEMS--- 283
M + ++ ++D++ F R+++ + +S TCG CS+ L+E S
Sbjct: 218 MMSSSRSNKALSYDNYDNDCFGLQRDKIDHHGNRMSKH---QQHTCGACSRPLSEKSLWS 274
Query: 284 ----WRSNNLSVVAVLICGHVYHAECLESMTHDINKYDPACPVCTFGXXXXXXXXXXXXX 339
+ +N LSV A+L CGHVYH ECLE MT +I+K+DP+CP+CT G
Sbjct: 275 SQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICTMGEKKTAKLSEKALK 334
Query: 340 XXXDVKAR-NKKSKNRXXXXXXXXXXXXXXHXX--XXXXXXXXPRADXXXXXXXXXXXPF 396
D+KAR NK+ +NR PR PF
Sbjct: 335 VEMDLKARHNKRLRNRVLDSDFDCDDFVMFDHSHRTAAAASKSPRLVSSSSAKSYSAKPF 394
Query: 397 LRRHFTFGSKGS-RSMLDNHPTRKKGFFWAKSSK 429
L RHF+FGS+ + +S +N P +KKGFFW KSSK
Sbjct: 395 LARHFSFGSRSNYKSPKENLPVKKKGFFWTKSSK 428
>AT2G21500.1 | Symbols: | RING/U-box superfamily protein |
chr2:9207965-9209575 REVERSE LENGTH=421
Length = 421
Score = 231 bits (590), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 167/450 (37%), Positives = 213/450 (47%), Gaps = 51/450 (11%)
Query: 1 MGAACCVAAKDK-TVQSGSTSEVLHRN-TRCSPTWSFRWDHRGGRVAGEDTSINWFSDGI 58
MG ACCVA +DK V + S E RN R SP WSFRWD+RGGRVAGE+TS++ SD I
Sbjct: 1 MGNACCVATRDKMVVPNTSAVENFQRNNVRYSPNWSFRWDNRGGRVAGEETSVSLLSDRI 60
Query: 59 SRNDGSENKNESAYVSEDGSPLQNYQRNRCLKSPISEGTNVHVRNSPTDQSISRTVSMDM 118
SRND S+ K+E+A VS GSPL N+Q KSP S DQS SR S+D
Sbjct: 61 SRNDVSDVKSETALVSSQGSPLDNFQTQSWQKSPAS------------DQSFSRIASIDS 108
Query: 119 NVEQGNELTESSI------VXXXXXXXXXXXXXXXXXXXXXXQCHMLPSSLTPSRWPYRS 172
EQ + T S Q H LP S +
Sbjct: 109 VSEQITQKTNDSTDPTYYPSPAKLSLSLASQPSSFSVSPLSSQSH-LPMPPASSSQLKLT 167
Query: 173 PGHQLLRQASDSRIPAYKSPSRFSLSEERPMFPTWSNESGMRSHGGSSDGWSIPGFPEMT 232
P +L +Q S +I + SPSR S +EER NES SDGWS+ F EM
Sbjct: 168 PPPRLSKQVSYGQIFGFTSPSRSSATEER-----LGNES-------QSDGWSMQAFSEMM 215
Query: 233 GTPHRDRWSFDSESFSFNRERLARSRSWLSAFSPVDLQTCGVCSKLLT-------EMSWR 285
R+ S+D+E F R+++ L + D Q CG CS+ L+ + +
Sbjct: 216 AYSRRESCSYDNECFGLRRDKIDN----LGSRKSNDQQNCGACSRSLSEKSLLSSQKIFA 271
Query: 286 SNNLSVVAVLICGHVYHAECLESMTHDINKYDPACPVCTFGXXXXXXXXXXXXXXXXDVK 345
+N LSV A+L CGHVYH+ECLE MT +I+K+DP+CP+CT G ++K
Sbjct: 272 TNELSVAAILACGHVYHSECLEQMTPEIDKFDPSCPICTLGEKKTFKLSEKALKADLEMK 331
Query: 346 AR-NKKSKNRXXXXXXXXXXXXXXHXXXXXXXXXXPRADXXXXXXXXXXXPFLRRHFTFG 404
AR NK+ +NR H P+ PFL RHF+FG
Sbjct: 332 ARHNKRLRNR-VVDSDEFVKFNNNHEAAVGYKGKTPKLISSSSLRSYSPKPFLARHFSFG 390
Query: 405 S-----KGSRSMLDNHPTRKKGFFWAKSSK 429
S K + + RKKGFFW KSSK
Sbjct: 391 SRSNSVKSPKEIHSPSSLRKKGFFWTKSSK 420
>AT2G21500.2 | Symbols: | RING/U-box superfamily protein |
chr2:9207965-9209575 REVERSE LENGTH=421
Length = 421
Score = 231 bits (590), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 167/450 (37%), Positives = 213/450 (47%), Gaps = 51/450 (11%)
Query: 1 MGAACCVAAKDK-TVQSGSTSEVLHRN-TRCSPTWSFRWDHRGGRVAGEDTSINWFSDGI 58
MG ACCVA +DK V + S E RN R SP WSFRWD+RGGRVAGE+TS++ SD I
Sbjct: 1 MGNACCVATRDKMVVPNTSAVENFQRNNVRYSPNWSFRWDNRGGRVAGEETSVSLLSDRI 60
Query: 59 SRNDGSENKNESAYVSEDGSPLQNYQRNRCLKSPISEGTNVHVRNSPTDQSISRTVSMDM 118
SRND S+ K+E+A VS GSPL N+Q KSP S DQS SR S+D
Sbjct: 61 SRNDVSDVKSETALVSSQGSPLDNFQTQSWQKSPAS------------DQSFSRIASIDS 108
Query: 119 NVEQGNELTESSI------VXXXXXXXXXXXXXXXXXXXXXXQCHMLPSSLTPSRWPYRS 172
EQ + T S Q H LP S +
Sbjct: 109 VSEQITQKTNDSTDPTYYPSPAKLSLSLASQPSSFSVSPLSSQSH-LPMPPASSSQLKLT 167
Query: 173 PGHQLLRQASDSRIPAYKSPSRFSLSEERPMFPTWSNESGMRSHGGSSDGWSIPGFPEMT 232
P +L +Q S +I + SPSR S +EER NES SDGWS+ F EM
Sbjct: 168 PPPRLSKQVSYGQIFGFTSPSRSSATEER-----LGNES-------QSDGWSMQAFSEMM 215
Query: 233 GTPHRDRWSFDSESFSFNRERLARSRSWLSAFSPVDLQTCGVCSKLLT-------EMSWR 285
R+ S+D+E F R+++ L + D Q CG CS+ L+ + +
Sbjct: 216 AYSRRESCSYDNECFGLRRDKIDN----LGSRKSNDQQNCGACSRSLSEKSLLSSQKIFA 271
Query: 286 SNNLSVVAVLICGHVYHAECLESMTHDINKYDPACPVCTFGXXXXXXXXXXXXXXXXDVK 345
+N LSV A+L CGHVYH+ECLE MT +I+K+DP+CP+CT G ++K
Sbjct: 272 TNELSVAAILACGHVYHSECLEQMTPEIDKFDPSCPICTLGEKKTFKLSEKALKADLEMK 331
Query: 346 AR-NKKSKNRXXXXXXXXXXXXXXHXXXXXXXXXXPRADXXXXXXXXXXXPFLRRHFTFG 404
AR NK+ +NR H P+ PFL RHF+FG
Sbjct: 332 ARHNKRLRNR-VVDSDEFVKFNNNHEAAVGYKGKTPKLISSSSLRSYSPKPFLARHFSFG 390
Query: 405 S-----KGSRSMLDNHPTRKKGFFWAKSSK 429
S K + + RKKGFFW KSSK
Sbjct: 391 SRSNSVKSPKEIHSPSSLRKKGFFWTKSSK 420
>AT1G75400.1 | Symbols: | RING/U-box superfamily protein |
chr1:28297609-28299464 FORWARD LENGTH=455
Length = 455
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 141/342 (41%), Positives = 177/342 (51%), Gaps = 22/342 (6%)
Query: 1 MGAACCVAAKDKTV--QSGSTSEVLHRNTRCSPTWSFRWDHRGGRVAGEDTSINWFSDGI 58
MG+ CCVA KD+ V G S +HRN+ CSP WSFR D+R RVA E ++S +
Sbjct: 1 MGSVCCVAVKDRKVPPSGGPASSSVHRNSACSPQWSFRRDNRR-RVADEIEGSPYYSPYV 59
Query: 59 SRNDGSENK----NESAYVSEDGSPLQNYQRNRCLKSPISE--GTNVHVRNSPTDQSISR 112
+ S +K +E +SE G+P + L +P S+ T NS S
Sbjct: 60 ASRGISMDKMSLGSERGTLSEGGTPPDGH-----LGTPASQKSATPEMSTNSMVPPSSGS 114
Query: 113 TVSMDMNVEQGNELTESSIVXXXXXXXXXXXXXXXXXXXXXXQCH--MLPSSLTPSRWPY 170
+++ +E N + IV H +LP TPSR
Sbjct: 115 SLASSDLIEVKNLVDSPGIVPSAQSKPLFSTPSLPNPVSDLSSAHTRLLPPKSTPSRRAR 174
Query: 171 RSPGHQLLRQASDSRIPAYKSP-SRFSLSEERPMF--PTWSNESGMRSHGGSSDG-WSIP 226
RSPGHQL RQ SDS+I KSP + +S+SE R F T SN+ S SS+G WS+
Sbjct: 175 RSPGHQLFRQVSDSQILGLKSPINNYSISEGRSSFVLSTCSNDFATGSQYASSEGGWSMN 234
Query: 227 GFPEMTGTPHRDRWSFDSESFSFNRERLARSRSWLSAF-SPVDLQTCGVCSKLLTEMSWR 285
F E+ RDRWSFDSE R +L+ S S S VD Q CG CSKLLTE S
Sbjct: 235 TFSELVAYSQRDRWSFDSEHLGSGRRKLSGGSSRFSFSPSVVDQQVCGACSKLLTERSSI 294
Query: 286 SN-NLSVVAVLICGHVYHAECLESMTHDINKYDPACPVCTFG 326
+ L + AVL CGHVYHAECLE+MT DI KYDPACP+CT G
Sbjct: 295 ATFELPIAAVLACGHVYHAECLETMTTDIEKYDPACPICTIG 336
>AT1G19680.1 | Symbols: | RING/U-box superfamily protein |
chr1:6805909-6807682 FORWARD LENGTH=444
Length = 444
Score = 188 bits (478), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 139/341 (40%), Positives = 178/341 (52%), Gaps = 32/341 (9%)
Query: 1 MGAACCVAAKDKTVQSGSTSEVLHRNTRCSPTWSFRWDHRGGRVAGE--DTS-------- 50
MG+ CCVAAKD+ V SG+ N+ CSP+WSFR D+R RVA E D+S
Sbjct: 1 MGSVCCVAAKDRNVPSGAID-----NSVCSPSWSFRRDNRR-RVADEIKDSSNHNVGSRG 54
Query: 51 --INWFSDGISRNDGSENKNESAYVSEDGSPLQNYQRNRCLKSPISEGTNVHVRNSPTDQ 108
I+ S G+ R S A + S + +P++ GT++ +R SP+D
Sbjct: 55 IDIDKLSLGLERGPPSSETGGLATLGSQKSADSEMGTASMVTAPLA-GTSLAIR-SPSDV 112
Query: 109 SISRTVSMDMNVEQGNELTESSIVXXXXXXXXXXXXXXXXXXXXXXQCHMLPSSLTPSRW 168
S++ V VE N + S IV H LP TPSR
Sbjct: 113 SLASPV----RVEVKNIVDSSDIVSSVLPNPSSSTSVSDLPSA---HTHSLPPRSTPSRR 165
Query: 169 PYRSPGHQLLRQASDSRIPAYKSPSRFSLSEERPMF--PTWSNESGMRSHGGSSDG-WSI 225
SPG QL RQ SDS+ KSP+ +S SE R F T SN++ SH SS+G WSI
Sbjct: 166 ARGSPGQQLFRQVSDSQTLGLKSPNNYSTSEGRSSFVLSTCSNDTATGSHFASSEGGWSI 225
Query: 226 PGFPEMTGTPHRDRWSFDSESFSFNRERLARSRSWLSAFSP-VDLQTCGVCSKLLTEMSW 284
F E+ R+RWSFD+E R RL+ S + SP VD QTCG CSKLLTE S
Sbjct: 226 NAFCELVAQSQRERWSFDNEHLGSGRRRLSGCSSSRFSCSPSVDQQTCGRCSKLLTERSP 285
Query: 285 RSN-NLSVVAVLICGHVYHAECLESMTHDINKYDPACPVCT 324
+ +L + AVL CGHVYHA CLE+MT++ KYDP CP+CT
Sbjct: 286 VARFDLPIPAVLACGHVYHAACLETMTNETEKYDPTCPICT 326
>AT5G18260.1 | Symbols: | RING/U-box superfamily protein |
chr5:6036226-6037295 REVERSE LENGTH=320
Length = 320
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 270 QTCGVCSKLLTEMS-------WRSNNLSVVAVLICGHVYHAECLESMTHDINKYDPACPV 322
Q CG+C KLL++ S RS ++ V C HVYH ECL+ T DP+CPV
Sbjct: 190 QRCGICKKLLSQKSPWSSYKILRSRDMPATGVFPCHHVYHVECLDKATPTAQTRDPSCPV 249
Query: 323 CT 324
C+
Sbjct: 250 CS 251
>AT1G14180.1 | Symbols: | RING/U-box superfamily protein |
chr1:4847828-4848970 FORWARD LENGTH=348
Length = 348
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 272 CGVCSKLLTEMS-W------RSNNLSVVAVLICGHVYHAECLESMTHDINKYDPACPVCT 324
CG+C++ L++ S W R+ ++ V VL C HV+H ECL+ T I + DP CP+CT
Sbjct: 185 CGLCNRYLSQKSPWGSRSIVRNRDMPVTGVLSCQHVFHVECLDQSTPKIQRNDPLCPICT 244
>AT1G14180.2 | Symbols: | RING/U-box superfamily protein |
chr1:4847976-4848970 FORWARD LENGTH=297
Length = 297
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 272 CGVCSKLLTEMS-W------RSNNLSVVAVLICGHVYHAECLESMTHDINKYDPACPVCT 324
CG+C++ L++ S W R+ ++ V VL C HV+H ECL+ T I + DP CP+CT
Sbjct: 134 CGLCNRYLSQKSPWGSRSIVRNRDMPVTGVLSCQHVFHVECLDQSTPKIQRNDPLCPICT 193