Miyakogusa Predicted Gene
- Lj1g3v3368890.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3368890.2 tr|Q24BQ3|Q24BQ3_TETTS Zinc knuckle family
protein OS=Tetrahymena thermophila (strain SB210)
GN=TTHE,29.83,6e-19,ZF_CCHC,Zinc finger, CCHC-type; zinc finger,Zinc
finger, CCHC-type; seg,NULL; no description,Zinc fi,CUFF.30600.2
(263 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G75560.2 | Symbols: | zinc knuckle (CCHC-type) family protei... 271 4e-73
AT1G75560.1 | Symbols: | zinc knuckle (CCHC-type) family protei... 271 4e-73
AT4G36020.1 | Symbols: CSDP1 | cold shock domain protein 1 | chr... 77 9e-15
AT3G42860.1 | Symbols: | zinc knuckle (CCHC-type) family protei... 60 2e-09
AT2G17870.1 | Symbols: ATCSP3, CSP3 | cold shock domain protein ... 59 3e-09
AT3G43590.1 | Symbols: | zinc knuckle (CCHC-type) family protei... 57 9e-09
AT5G52380.1 | Symbols: | VASCULAR-RELATED NAC-DOMAIN 6 | chr5:2... 48 6e-06
>AT1G75560.2 | Symbols: | zinc knuckle (CCHC-type) family protein |
chr1:28371420-28372717 REVERSE LENGTH=257
Length = 257
Score = 271 bits (692), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 146/251 (58%), Positives = 175/251 (69%), Gaps = 24/251 (9%)
Query: 18 DRKIRSDRFSYRDAPYRRDSRR--GFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHI 75
DR++RS+R SY DAP RR+ FS+ NLC NCKRPGHFAR+C NV++C+NCGLPGHI
Sbjct: 26 DRRMRSERVSYHDAPSRREREPRRAFSQGNLCNNCKRPGHFARDCSNVSVCNNCGLPGHI 85
Query: 76 ASECTTKSLCWNCKEPGHMASSCPNEGICHTCGKVGHRARECSAPPMPPGDLRLCNNCYK 135
A+ECT +S CWNC+EPGH+AS+C NEGICH+CGK GHRAR+CS GDLRLCNNC+K
Sbjct: 86 AAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFK 145
Query: 136 QGHIAVECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNI-LGDRSSXX 194
QGH+A +CTN+KAC NCR +GH+ARDC NDP+CN+C++SGHVAR CPK + DR S
Sbjct: 146 QGHLAADCTNDKACKNCRTSGHIARDCRNDPVCNICSISGHVARHCPKGDSNYSDRGSRV 205
Query: 195 XXXXXXXXXXXXXXYRDVVCRNCQQLGHMSRDCMG--PLMICHNCGGRGHLAYECPSGRF 252
L MSRD G ++ICHNCGGRGH AYECPS R
Sbjct: 206 RDGGMQRGG----------------LSRMSRDREGVSAMIICHNCGGRGHRAYECPSARV 249
Query: 253 MDRYAPNTRRY 263
DR RRY
Sbjct: 250 ADR---GFRRY 257
>AT1G75560.1 | Symbols: | zinc knuckle (CCHC-type) family protein |
chr1:28371420-28372717 REVERSE LENGTH=257
Length = 257
Score = 271 bits (692), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 146/251 (58%), Positives = 175/251 (69%), Gaps = 24/251 (9%)
Query: 18 DRKIRSDRFSYRDAPYRRDSRR--GFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHI 75
DR++RS+R SY DAP RR+ FS+ NLC NCKRPGHFAR+C NV++C+NCGLPGHI
Sbjct: 26 DRRMRSERVSYHDAPSRREREPRRAFSQGNLCNNCKRPGHFARDCSNVSVCNNCGLPGHI 85
Query: 76 ASECTTKSLCWNCKEPGHMASSCPNEGICHTCGKVGHRARECSAPPMPPGDLRLCNNCYK 135
A+ECT +S CWNC+EPGH+AS+C NEGICH+CGK GHRAR+CS GDLRLCNNC+K
Sbjct: 86 AAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFK 145
Query: 136 QGHIAVECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNI-LGDRSSXX 194
QGH+A +CTN+KAC NCR +GH+ARDC NDP+CN+C++SGHVAR CPK + DR S
Sbjct: 146 QGHLAADCTNDKACKNCRTSGHIARDCRNDPVCNICSISGHVARHCPKGDSNYSDRGSRV 205
Query: 195 XXXXXXXXXXXXXXYRDVVCRNCQQLGHMSRDCMG--PLMICHNCGGRGHLAYECPSGRF 252
L MSRD G ++ICHNCGGRGH AYECPS R
Sbjct: 206 RDGGMQRGG----------------LSRMSRDREGVSAMIICHNCGGRGHRAYECPSARV 249
Query: 253 MDRYAPNTRRY 263
DR RRY
Sbjct: 250 ADR---GFRRY 257
>AT4G36020.1 | Symbols: CSDP1 | cold shock domain protein 1 |
chr4:17043443-17044342 REVERSE LENGTH=299
Length = 299
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 71/167 (42%), Gaps = 52/167 (31%)
Query: 47 CKNCKRPGHFARECPNVA-------------ICHNCGLPGHIASECTTKSL--------- 84
C NC GHFAR+C + C+ CG GH+A +CT KS+
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 85 ------CWNCKEPGHMASSCPNE-------------GICHTCGKVGHRARECSAPPMPPG 125
C+ C + GH A C + G C++CG VGH AR+C+ P
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPS- 252
Query: 126 DLRLCNNCYKQGHIAVECT--------NEKACNNCRKTGHLARDCPN 164
R C C GH+A +C N+ AC C K GH AR+C +
Sbjct: 253 --RGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECSS 297
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 81/225 (36%), Gaps = 70/225 (31%)
Query: 66 CHNCGLPGHIASEC-------------TTKSLCWNCKEPGHMASSCPNEG---------- 102
C+NCG GHI+ +C C+NC + GH A C + G
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 103 ---ICHTCGKVGHRARECSAPPMPPGDLR--------LCNNCYKQGHIAVECTNEKACNN 151
C+TCG VGH AR+C+ + GD R C C GH A +CT + A N
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGN 221
Query: 152 CRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNILGDRSSXXXXXXXXXXXXXXXXYRD 211
R G C C GH+AR C R
Sbjct: 222 VRSGG------GGSGTCYSCGGVGHIARDCATK-----RQPSRG---------------- 254
Query: 212 VVCRNCQQLGHMSRDC-------MGPLMICHNCGGRGHLAYECPS 249
C C GH++RDC G C+ CG GH A EC S
Sbjct: 255 --CYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECSS 297
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 60/161 (37%), Gaps = 52/161 (32%)
Query: 130 CNNCYKQGHIAVECTNEKA-------------CNNCRKTGHLARDCPN------------ 164
C NC + GHI+ +C C NC TGH ARDC +
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 165 -DPICNLCNVSGHVARQCPKSNIL-GDRSSXXXXXXXXXXXXXXXXYRDVVCRNCQQLGH 222
+ C C GHVAR C + ++ GD+ C C +GH
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDG-------------CYTCGDVGH 208
Query: 223 MSRDCM------------GPLMICHNCGGRGHLAYECPSGR 251
+RDC G C++CGG GH+A +C + R
Sbjct: 209 FARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKR 249
>AT3G42860.1 | Symbols: | zinc knuckle (CCHC-type) family protein |
chr3:14946458-14948097 REVERSE LENGTH=372
Length = 372
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 27/147 (18%)
Query: 47 CKNCKRPGHFAREC------------PNVAICHNCGLPGHIASECTTKSLCWNCK-EPGH 93
C C + GH+AR+C C CG PGH + +CT +S N K EPG
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSG--NPKYEPGQ 296
Query: 94 MASSCPNEGICHTCGKVGHRARECSAPPMPPGDLRLCNNCYKQGHIAVECTNEKACNNCR 153
M SS + G C+ CGK GH +R+C+ + N ++ G A ++ C C
Sbjct: 297 MKSSS-SSGECYKCGKQGHWSRDCTG--------QSSNQQFQSGQ-AKSTSSTGDCYKCG 346
Query: 154 KTGHLARDCPNDPICNLCNVSGHVARQ 180
K GH +RDC + N G RQ
Sbjct: 347 KAGHWSRDCTSP--AQTTNTPGKRQRQ 371
>AT2G17870.1 | Symbols: ATCSP3, CSP3 | cold shock domain protein 3 |
chr2:7764276-7765181 REVERSE LENGTH=301
Length = 301
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 72/203 (35%), Gaps = 67/203 (33%)
Query: 47 CKNCKRPGHFARECP-----------------NVAICHNCGLPGHIASECTTKSL----- 84
C NC GH A++C C+ CG GH A +C
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 85 -------CWNCKEPGHMASSC----------------PNEGICHTCGKVGHRAREC--SA 119
C++C E GH+A C C+ CG VGH AR+C +
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215
Query: 120 PPMPPGDLRLCNNCYKQGHIAVECTNE---------KACNNCRKTGHLARDCPNDPI--- 167
G C C GHIA CT++ +AC C TGHLARDC
Sbjct: 216 GGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSS 275
Query: 168 --------CNLCNVSGHVARQCP 182
C +C GH AR+C
Sbjct: 276 GGGGGSNKCFICGKEGHFARECT 298
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 73/226 (32%), Gaps = 83/226 (36%)
Query: 85 CWNCKEPGHMASSCPNEGI-----------------CHTCGKVGHRAREC-----SAPPM 122
C+NC E GHMA C C+ CG VGH AR+C
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 123 PPGDLRLCNNCYKQGHIAVEC----------------TNEKACNNCRKTGHLARDC---- 162
G R C +C + GH+A +C + C C GH ARDC
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215
Query: 163 -----PNDPICNLCNVSGHVARQC----PKSNILGDRSSXXXXXXXXXXXXXXXXYRDVV 213
C C GH+A+ C P G R+
Sbjct: 216 GGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRA---------------------- 253
Query: 214 CRNCQQLGHMSRDC----------MGPLMICHNCGGRGHLAYECPS 249
C C GH++RDC G C CG GH A EC S
Sbjct: 254 CYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFARECTS 299
>AT3G43590.1 | Symbols: | zinc knuckle (CCHC-type) family protein |
chr3:15509753-15512255 FORWARD LENGTH=551
Length = 551
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 77/192 (40%), Gaps = 59/192 (30%)
Query: 42 SRDNLCKNCKRPGHFARECPNV-------AICHNCGLPGH--------IASECTTKSLCW 86
S+ + C CK+ GH A++CP+ A+C CG GH + E C+
Sbjct: 205 SKGHDCYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCY 264
Query: 87 NCKEPGHMASSCPNEGI-----CHTCGKVGHRAREC-----------SAPPMPPGDLRLC 130
CK GH+ P + C+ CG++GH C SA P + R
Sbjct: 265 ICKSFGHLCCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREA 324
Query: 131 NNCYKQGHIAVECTNEKACNNCRKTGHLARDCPN------------DPICNLCNVSGHVA 178
+ CY+ C + GH AR+CPN +C CN SGH A
Sbjct: 325 SECYR----------------CGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFA 368
Query: 179 RQCPKSNILGDR 190
R+CP S+ + R
Sbjct: 369 RECPNSSQVSKR 380
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 80/229 (34%), Gaps = 51/229 (22%)
Query: 47 CKNCKRPGHFARECPNVAI----CHNCGLPGHIASECTTKSLCWNCKEPGHMASSCPNE- 101
C +C GH + CP C CG H A +C+ C+ CK+ GH A CP++
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRAKDCPDKY 227
Query: 102 ------GICHTCGKVGHRARECSAPPMPPGDLRLCNNCYKQGHIAVECTNEKACNNCRKT 155
+C CG GH D+ LC Y + E + C C+
Sbjct: 228 KNGSKGAVCLRCGDFGH-------------DMILCKYEYSK-----EDLKDVQCYICKSF 269
Query: 156 GHLARDCPNDPI-----CNLCNVSGHVARQCPKSNILGDRSSXXXXXXXXXXXXXXXXYR 210
GHL P + + C C GH C + + + YR
Sbjct: 270 GHLCCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYR 329
Query: 211 DVVCRNCQQLGHMSRDCMGPLMI-----------CHNCGGRGHLAYECP 248
C + GH +R+C I C+ C G GH A ECP
Sbjct: 330 ------CGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECP 372
>AT5G52380.1 | Symbols: | VASCULAR-RELATED NAC-DOMAIN 6 |
chr5:21261521-21263061 REVERSE LENGTH=268
Length = 268
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 23/100 (23%)
Query: 41 FSRDNLCKNCKRPGHFARECPNV-------AICHNCGLPGHIASEC--------TTKSLC 85
+ R+ +C C+R GH + CP +C+NCG GH S C T + C
Sbjct: 95 WERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASC 154
Query: 86 WNCKEPGHMASSCPNE--------GICHTCGKVGHRAREC 117
+ CK GH++ +CP G C CG V H ++C
Sbjct: 155 FICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDC 194