Miyakogusa Predicted Gene

Lj1g3v3330680.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3330680.1 Non Chatacterized Hit- tr|C3YPG3|C3YPG3_BRAFL
Putative uncharacterized protein OS=Branchiostoma flor,30.43,1e-18,GB
DEF: HYPOTHETICAL PROTEIN,NULL; FAMILY NOT NAMED,NULL; seg,NULL;
zf-primase,Zinc finger, Mcm10/Dn,CUFF.30484.1
         (418 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20980.1 | Symbols: MCM10 | minichromosome maintenance 10 | c...   390   e-109

>AT2G20980.1 | Symbols: MCM10 | minichromosome maintenance 10 |
           chr2:9011654-9013856 REVERSE LENGTH=396
          Length = 396

 Score =  390 bits (1002), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/400 (53%), Positives = 271/400 (67%), Gaps = 23/400 (5%)

Query: 21  RVLETPPGSPS--PGYLTDSDSDGAPNQRDKNPDMSVFRNAVQDCXXXXXXXXXXXXXXX 78
           RVLETPPGSPS  PGYLTD   D +P +R  + D+S FR+ VQDC               
Sbjct: 17  RVLETPPGSPSAAPGYLTD---DESPKRRG-HSDLSDFRSVVQDCIDYNPKPIAKNTKPK 72

Query: 79  XXATHAKDSDVEKFSGLRIRDQLLTPAELRDSFSDIRFVRLPVIKNLFIGDSFSGSWATV 138
             + ++  +D+EKFSGLRIR+QLL+PAE+ D FSDIRFVRLP IKNL +GD  SG WAT+
Sbjct: 73  G-SNNSNTNDIEKFSGLRIRNQLLSPAEISDLFSDIRFVRLPTIKNLLMGDKLSGCWATM 131

Query: 139 GVLTEKGIQRTSSSGKGYCIWKIGCLDENTVSLFLFGDAYLRNKNEQAGAVFALFDCSVR 198
           GV+TEKG  +TSS G+ Y IWKIG L+EN VSLFLFGDAY +N+ E+AG VF LF+CS+R
Sbjct: 132 GVITEKGQPKTSSIGQAYGIWKIGSLNENNVSLFLFGDAYKKNETEKAGTVFGLFNCSLR 191

Query: 199 KDAKGNGFSLSIYSPSQIKKMGTSVDYGVCKGGRADGMACTMVINKRHGAYCKFHKSKTS 258
           KD  G  FSLS+ S  Q+ K+G S DYGVC   R DG  CT V+NKR GA+CK HK   S
Sbjct: 192 KDNGGREFSLSVNSAKQMVKLGVSADYGVCTAKRKDGTTCTSVVNKRQGAFCKIHKLNAS 251

Query: 259 EKYSTTRTELKGGNLRTAFRPRDQYLRSEGIFVVDPLADKT-NLKKSQPVKLMSVDGLRK 317
           +K++T RTELKGGNLRTAFR     L+S+GI+ V+P AD++ N K +QPV+++SV+GLRK
Sbjct: 252 DKFATMRTELKGGNLRTAFRD----LKSQGIYTVEPPADRSGNKKTTQPVRVLSVEGLRK 307

Query: 318 ALSNAGKVTTTIRSQGIRFLSEVAGNSDPKITNKGPKTPKERRTSAEKRKSSFMNVGSSV 377
           ALS A KVT  + SQGIRFL+E+A     K  NK  +   +   S EKRK+S        
Sbjct: 308 ALSGADKVTPNVHSQGIRFLNEMARQKASKNVNKKSEAVNK---STEKRKASTKET---- 360

Query: 378 IRNQQFDVKRKKTDGQDLVDKTTKSSGKMIELDFVSSDED 417
                 + KRKKT+ +    +   S+GKM+ LDF SSDE+
Sbjct: 361 --QVNGEPKRKKTEHRKETPEI--STGKMMLLDFCSSDEE 396