Miyakogusa Predicted Gene
- Lj1g3v3330360.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3330360.1 tr|Q6ZND7|Q6ZND7_HUMAN cDNA FLJ16192 fis, clone
BRTHA2017364, weakly similar to ATP-DEPENDENT RNA HE,85.54,0,seg,NULL;
P-loop containing nucleoside triphosphate hydrolases,NULL; DEAD/DEAH
BOX HELICASE, PUTATIV,NODE_38073_length_1836_cov_59.866013.path2.1
(424 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 604 e-173
AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWAR... 171 7e-43
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 135 4e-32
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosph... 131 8e-31
AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosph... 125 6e-29
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 121 7e-28
AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family prote... 120 2e-27
AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 120 2e-27
AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 120 2e-27
AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 120 2e-27
AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 119 3e-27
AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 119 3e-27
AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosph... 119 6e-27
AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosph... 117 1e-26
AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosph... 117 2e-26
AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 117 2e-26
AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 117 2e-26
AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 117 2e-26
AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |... 117 2e-26
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family ... 116 2e-26
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 115 6e-26
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 115 6e-26
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 115 6e-26
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 115 6e-26
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 114 1e-25
AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 114 1e-25
AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosph... 114 2e-25
AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosph... 114 2e-25
AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 113 2e-25
AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 112 5e-25
AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |... 110 1e-24
AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 110 2e-24
AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |... 110 3e-24
AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides,... 108 8e-24
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosph... 107 1e-23
AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosph... 106 2e-23
AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 106 2e-23
AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosph... 106 3e-23
AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosph... 105 6e-23
AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosph... 104 1e-22
AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosph... 103 2e-22
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor ... 101 1e-21
AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleos... 100 2e-21
AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 | ch... 100 2e-21
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA... 100 4e-21
AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosph... 99 5e-21
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 98 9e-21
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 98 1e-20
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA ... 98 1e-20
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 98 1e-20
AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 98 1e-20
AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 96 3e-20
AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 95 9e-20
AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 93 3e-19
AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiatio... 93 4e-19
AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 92 6e-19
AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | c... 92 6e-19
AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 91 1e-18
AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosph... 91 1e-18
AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 90 3e-18
AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosph... 89 4e-18
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosph... 89 4e-18
AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 89 7e-18
AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 88 1e-17
AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 88 1e-17
AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosph... 86 4e-17
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosph... 85 1e-16
AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family prot... 83 4e-16
AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosph... 82 8e-16
AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosph... 81 2e-15
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase... 81 2e-15
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosph... 77 2e-14
AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 75 7e-14
AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 74 2e-13
AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 74 2e-13
AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside triph... 70 3e-12
AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 68 1e-11
AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:900142... 67 2e-11
>AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:2201531-2204662 FORWARD LENGTH=781
Length = 781
Score = 604 bits (1558), Expect = e-173, Method: Compositional matrix adjust.
Identities = 280/420 (66%), Positives = 347/420 (82%)
Query: 3 NRKPSMPDNNFFSVKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQ 62
N+ + FFS K+F +IGCS++++++L+ Q+F RP+H+QAMAF PVI GK+C+I+DQ
Sbjct: 360 NKTKDTRETGFFSRKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQ 419
Query: 63 SGSGKTLAYLAPIIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGV 122
SGSGKTLAYL P+IQRL++EEL+G SKSS PRV++L PTAELASQVL NCRS+SKSGV
Sbjct: 420 SGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGV 479
Query: 123 PFKSMVVTGGFRQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILL 182
PF+SMVVTGGFRQRTQLE+L+QGVDVLIATPGRF +L+ EG L L+NLRCA+LDEVDIL
Sbjct: 480 PFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILF 539
Query: 183 GDEDFEGALQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLE 242
GD++FE ALQ LINSS V QYLFVTATLP +Y++LVEVFPDCE++MGP +HR+S+ LE
Sbjct: 540 GDDEFEAALQNLINSSPVTAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALE 599
Query: 243 EVLVDCSGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRID 302
E LVDCSG+D EKTP+TAF NKK ALLQ++EE+PV +TI+FCN+IETCRKVEN R+D
Sbjct: 600 EFLVDCSGDDNAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVD 659
Query: 303 KKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILF 362
+K ++ VLPFHAA++QESRL + + FT S +E S F+VCTDRASRGIDF+ V+HV+LF
Sbjct: 660 RKERQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLF 719
Query: 363 DFPRDPSEYXXXXXXXXXXXXXXXKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAFEL 422
DFPRDPSEY KAFIFVVGKQV LAR+I+ERN KGHP+HDVP+A+E
Sbjct: 720 DFPRDPSEYVRRVGRTARGARGKGKAFIFVVGKQVGLARRIIERNEKGHPVHDVPNAYEF 779
>AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWARD
LENGTH=621
Length = 621
Score = 171 bits (434), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 115/367 (31%), Positives = 196/367 (53%), Gaps = 33/367 (8%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
V++F+++G S+ V+ +LQ + P+ +Q + V+ K+ V+ +GSGKTLAYL PI
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 76 IQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQ 135
+Q ++++E K+ + PR V+L PT EL+ QV +S+S F+S++V+GG R
Sbjct: 171 VQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHAR-FRSILVSGGSRI 229
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCL- 194
R Q +SL +D+++ TPGR L I+EG + ++ VLDE D + D F ++
Sbjct: 230 RPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMF-DRGFGPEIRKFL 288
Query: 195 --INSSLVDT-----QYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMH-RISSRLEEVLV 246
+N + T Q + VTAT+ V + E F E + +H +I++ + +
Sbjct: 289 APLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIK 348
Query: 247 DCSGEDGQEKTPDTAFLNKKAALLQLVEESPVP--RTIVFCNRIETCRKVENALNRIDKK 304
GED E ALLQ++E S + +VFCN + + R V++ L+
Sbjct: 349 LSGGEDKLE------------ALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSE---- 392
Query: 305 GTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDF 364
+I + +H + E R+ + + F +VCTD A+RG+D +V+HV++FDF
Sbjct: 393 -NQISTVNYHGEVPAEQRVENLKKFKDEEGD--CPTLVCTDLAARGLDL-DVDHVVMFDF 448
Query: 365 PRDPSEY 371
P++ +Y
Sbjct: 449 PKNSIDY 455
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 177/358 (49%), Gaps = 29/358 (8%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
VKSF+D+G D V++ ++ FT P+ +Q+ + + G+ + ++GSGKTL+YL P
Sbjct: 98 VKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPA 157
Query: 76 IQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQ 135
I + + + + P V++LAPT ELA Q+ S K+ + GG +
Sbjct: 158 IVHVNAQPM----LAHGDGPIVLVLAPTRELAVQIQQEASKFGSSS-KIKTTCIYGGVPK 212
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLI 195
Q+ LQ+GV+++IATPGR + +++ L + VLDE D +L D F+ ++ ++
Sbjct: 213 GPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRML-DMGFDPQIRKIV 271
Query: 196 NSSLVDTQYLFVTATLPKNVYSRLVE--VFPDCEMIMGPGMHRISSRLEEVLVDCSGEDG 253
+ D Q L+ +AT PK V +L + ++ ++I+G + + + ++ VD E
Sbjct: 272 SHIRPDRQTLYWSATWPKEV-EQLSKKFLYNPYKVIIGSSDLKANRAIRQI-VDVISESQ 329
Query: 254 QEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPF 313
+ NK LL+ + + R +VF + + C ++ L R+D L
Sbjct: 330 K--------YNKLVKLLEDIMDG--SRILVFLDTKKGCDQITRQL-RMDG----WPALSI 374
Query: 314 HAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
H +Q A R+ S M TD A+RG+D +V +VI +DFP +Y
Sbjct: 375 HGDKSQ----AERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDY 428
>AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318967-25322071
REVERSE LENGTH=591
Length = 591
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 175/361 (48%), Gaps = 35/361 (9%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
+K F+D DN+++++ FT P+ +QA + + G+ + ++GSGKTLAYL P
Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 223
Query: 76 IQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMS-KSGVPFKSMVVTGGFR 134
+ + + G+ P V+ILAPT ELA Q+ + R +SGV +S + GG
Sbjct: 224 LVHVSAQPRLGQ----DDGPIVLILAPTRELAVQIQEESRKFGLRSGV--RSTCIYGGAP 277
Query: 135 QRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCL 194
+ Q+ L++GV+++IATPGR + +++ L + VLDE D +L D FE ++ +
Sbjct: 278 KGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRML-DMGFEPQIRKI 336
Query: 195 INSSLVDTQYLFVTATLPKNVYSRLVEVFPD-CEMIMGPGMHRISSRLEEVLVDCSGEDG 253
++ D Q L +AT P+ V + + D + I+G + + + +V+
Sbjct: 337 VSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVI-------- 388
Query: 254 QEKTPDTAFLNKKAALL-QLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLP 312
E P N+ LL QL++ S + ++F C +V L R+D L
Sbjct: 389 -EIVPTPEKYNRLLTLLKQLMDGS---KILIFVETKRGCDQVTRQL-RMDG----WPALA 439
Query: 313 FHAAMTQESRLASREGFT--RSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSE 370
H TQ R F RSP M TD A+RG+D ++ V+ +DFP +
Sbjct: 440 IHGDKTQSERDRVLAEFKSGRSP------IMTATDVAARGLDVKDIKCVVNYDFPNTLED 493
Query: 371 Y 371
Y
Sbjct: 494 Y 494
>AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:19429083-19431617
REVERSE LENGTH=760
Length = 760
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 171/357 (47%), Gaps = 35/357 (9%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAP- 74
VK+F+D G S ++ +++ Q++ +P+ +Q A V++G+ + ++GSGKT A++ P
Sbjct: 227 VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPM 286
Query: 75 IIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFR 134
I+ + Q EL+ + P VI APT ELA Q+ + SK+ + V GG
Sbjct: 287 IVHIMDQPELQ-----RDEGPIGVICAPTRELAHQIFLEAKKFSKA-YGLRVSAVYGGMS 340
Query: 135 QRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCL 194
+ Q + L+ G ++++ATPGR + ++K L + VLDE D + D FE ++ +
Sbjct: 341 KHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMF-DLGFEPQVRSI 399
Query: 195 INSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMI----MGPGMHRISSRLEEVLVDCSG 250
+ D Q L +AT+P V E+ D + +G I+ + + D
Sbjct: 400 VGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDA-- 457
Query: 251 EDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQV 310
EK P +L +K L +++E V +VF ++ T ++E L +V
Sbjct: 458 ----EKLP---WLLEK--LPGMIDEGDV---LVFASKKATVDEIEAQLTL-----NSFKV 500
Query: 311 LPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRD 367
H Q SR+ + + F V ++ TD A+RG+D + V+ +D +D
Sbjct: 501 AALHGDKDQASRMETLQKFKSG----VHHVLIATDVAARGLDIKSLKTVVNYDIAKD 553
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD LENGTH=591
Length = 591
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 180/363 (49%), Gaps = 33/363 (9%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
+K+FKD+ V+ +L+ + +P+ +Q ++AG+ + +GSGKTL ++ P+
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 76 IQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRS----MSKSGVP-FKSMVVT 130
I QEE+ ++ + P +I+ P+ ELA Q + + ++G P +S++
Sbjct: 205 IMIALQEEMM-MPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCI 263
Query: 131 GGFRQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGA 190
GG R+QLE +++GV +++ATPGR ++ + + L R LDE D L+ D FE
Sbjct: 264 GGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLV-DLGFEDD 322
Query: 191 LQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSG 250
++ + + Q L +AT+P +++F ++ + V V +G
Sbjct: 323 IREVFDHFKSQRQTLLFSATMPTK-----IQIFARSALV----------KPVTVNVGRAG 367
Query: 251 EDGQEKTPDTAFLNKKAALLQLVE--ESPVPRTIVFCNRIETCRKVENALNRIDKKGTRI 308
+ + ++ ++A ++ L+E + P ++FC E V++ + KG +
Sbjct: 368 AANLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFC---ENKADVDDIHEYLLLKG--V 422
Query: 309 QVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDP 368
+ + H QE R + F ++ K+V +V TD AS+G+DF ++ HVI +D P +
Sbjct: 423 EAVAIHGGKDQEDREYAISSF-KAGKKDV---LVATDVASKGLDFPDIQHVINYDMPAEI 478
Query: 369 SEY 371
Y
Sbjct: 479 ENY 481
>AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 172/364 (47%), Gaps = 29/364 (7%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
V +F DI D + +++ + RP+ VQ A ++A + + Q+GSGKT A+ PI
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 76 IQR-LKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMS-KSGVPFKSMVVTGGF 133
I +K + +E S + P VIL+PT ELA Q+ D + S ++GV K +V GG
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV--KVVVAYGGT 267
Query: 134 RQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQC 193
QL L++G D+L+ATPGR L++ + + +R LDE D +L D FE ++
Sbjct: 268 PIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRML-DMGFEPQIRK 326
Query: 194 LINSSLVDT----QYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCS 249
++ + Q + +AT P + RL F + + G R+ S + L+
Sbjct: 327 IVEQMDMPPRGVRQTMLFSATFPSQI-QRLAADFMSNYIFLAVG--RVGSSTD--LITQR 381
Query: 250 GEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQ 309
E QE + ++ A + ++ + T+VF +EN L + T I
Sbjct: 382 VEFVQESDKRSHLMDLLHAQRETQDKQSL--TLVFVETKRGADTLENWLCMNEFPATSI- 438
Query: 310 VLPFHAAMTQESRLASREGFT--RSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRD 367
H TQ+ R + F R+P +V TD A+RG+D V HV+ FD P D
Sbjct: 439 ----HGDRTQQEREVALRSFKTGRTP------ILVATDVAARGLDIPHVAHVVNFDLPND 488
Query: 368 PSEY 371
+Y
Sbjct: 489 IDDY 492
>AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 172/364 (47%), Gaps = 29/364 (7%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
V +F DI D + +++ + RP+ VQ A ++A + + Q+GSGKT A+ PI
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 76 IQR-LKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMS-KSGVPFKSMVVTGGF 133
I +K + +E S + P VIL+PT ELA Q+ D + S ++GV K +V GG
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV--KVVVAYGGT 267
Query: 134 RQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQC 193
QL L++G D+L+ATPGR L++ + + +R LDE D +L D FE ++
Sbjct: 268 PIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRML-DMGFEPQIRK 326
Query: 194 LINSSLVDT----QYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCS 249
++ + Q + +AT P + RL F + + G R+ S + L+
Sbjct: 327 IVEQMDMPPRGVRQTMLFSATFPSQI-QRLAADFMSNYIFLAVG--RVGSSTD--LITQR 381
Query: 250 GEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQ 309
E QE + ++ A + ++ + T+VF +EN L + T I
Sbjct: 382 VEFVQESDKRSHLMDLLHAQRETQDKQSL--TLVFVETKRGADTLENWLCMNEFPATSI- 438
Query: 310 VLPFHAAMTQESRLASREGFT--RSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRD 367
H TQ+ R + F R+P +V TD A+RG+D V HV+ FD P D
Sbjct: 439 ----HGDRTQQEREVALRSFKTGRTP------ILVATDVAARGLDIPHVAHVVNFDLPND 488
Query: 368 PSEY 371
+Y
Sbjct: 489 IDDY 492
>AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 172/364 (47%), Gaps = 29/364 (7%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
V +F DI D + +++ + RP+ VQ A ++A + + Q+GSGKT A+ PI
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 76 IQR-LKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMS-KSGVPFKSMVVTGGF 133
I +K + +E S + P VIL+PT ELA Q+ D + S ++GV K +V GG
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV--KVVVAYGGT 267
Query: 134 RQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQC 193
QL L++G D+L+ATPGR L++ + + +R LDE D +L D FE ++
Sbjct: 268 PIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRML-DMGFEPQIRK 326
Query: 194 LINSSLVDT----QYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCS 249
++ + Q + +AT P + RL F + + G R+ S + L+
Sbjct: 327 IVEQMDMPPRGVRQTMLFSATFPSQI-QRLAADFMSNYIFLAVG--RVGSSTD--LITQR 381
Query: 250 GEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQ 309
E QE + ++ A + ++ + T+VF +EN L + T I
Sbjct: 382 VEFVQESDKRSHLMDLLHAQRETQDKQSL--TLVFVETKRGADTLENWLCMNEFPATSI- 438
Query: 310 VLPFHAAMTQESRLASREGFT--RSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRD 367
H TQ+ R + F R+P +V TD A+RG+D V HV+ FD P D
Sbjct: 439 ----HGDRTQQEREVALRSFKTGRTP------ILVATDVAARGLDIPHVAHVVNFDLPND 488
Query: 368 PSEY 371
+Y
Sbjct: 489 IDDY 492
>AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:16069669-16071405 REVERSE LENGTH=542
Length = 542
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 179/363 (49%), Gaps = 33/363 (9%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
+K+F D+ +++ L+++ P+ +Q V++G+ + +GSGKTL ++ P+
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 76 IQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCR----SMSKSGVP-FKSMVVT 130
I QEE+ ++ + P +++ P+ ELA Q D S+ + G P +S++
Sbjct: 156 IILALQEEIM-MPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCI 214
Query: 131 GGFRQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGA 190
GG R+QL+ +++GV +++ATPGR ++ + + L R LDE D L+ D FE
Sbjct: 215 GGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLV-DLGFEDD 273
Query: 191 LQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSG 250
++ + + Q L +AT+P +++F ++ + V V +G
Sbjct: 274 IRHVFDHFKSQRQTLLFSATMPAK-----IQIFATSALV----------KPVTVNVGRAG 318
Query: 251 EDGQEKTPDTAFLNKKAALLQLVE--ESPVPRTIVFCNRIETCRKVENALNRIDKKGTRI 308
+ + ++ ++A ++ L+E + P ++FC E V++ + KG +
Sbjct: 319 AANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFC---ENKADVDDIHEYLLLKG--V 373
Query: 309 QVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDP 368
+ + H QE R + F ++ K+V +V TD AS+G+DF ++ HVI +D P +
Sbjct: 374 EAVAIHGGKDQEDRDYAISLF-KAGKKDV---LVATDVASKGLDFPDIQHVINYDMPGEI 429
Query: 369 SEY 371
Y
Sbjct: 430 ENY 432
>AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 165/356 (46%), Gaps = 39/356 (10%)
Query: 19 FKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQR 78
F+D ++++ + + F +PS +Q + + G + ++G+GKT A+ P++++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 79 LKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQ 138
+ ++ + +IL PT ELA Q C+ +SK + + MV TGG R
Sbjct: 186 ID---------PNNNVIQAMILVPTRELALQTSQVCKELSKY-LNIQVMVTTGGTSLRDD 235
Query: 139 LESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINSS 198
+ L Q V +L+ TPGR L L K+G L + V+DE D LL E F+ +L+ LI
Sbjct: 236 IMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAE-FQPSLEELIQFL 294
Query: 199 LVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKTP 258
+ Q+L +AT P V+ F D + P + + +L + V T
Sbjct: 295 PQNRQFLMFSATFPVT-----VKAFKD-RHLRKPYVINLMDQLTLMGV----------TQ 338
Query: 259 DTAFLNKKA---ALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHA 315
AF+ ++ L L + + ++I+FCN + +VE +I + G HA
Sbjct: 339 YYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVN---RVELLAKKITELG--YSCFYIHA 393
Query: 316 AMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
M Q+ R F + +VCTD +RGID VN VI FDFPR Y
Sbjct: 394 KMVQDHRNRVFHEFRNGACRN----LVCTDLFTRGIDIQAVNVVINFDFPRTSESY 445
>AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 165/356 (46%), Gaps = 39/356 (10%)
Query: 19 FKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQR 78
F+D ++++ + + F +PS +Q + + G + ++G+GKT A+ P++++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 79 LKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQ 138
+ ++ + +IL PT ELA Q C+ +SK + + MV TGG R
Sbjct: 186 ID---------PNNNVIQAMILVPTRELALQTSQVCKELSKY-LNIQVMVTTGGTSLRDD 235
Query: 139 LESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINSS 198
+ L Q V +L+ TPGR L L K+G L + V+DE D LL E F+ +L+ LI
Sbjct: 236 IMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAE-FQPSLEELIQFL 294
Query: 199 LVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKTP 258
+ Q+L +AT P V+ F D + P + + +L + V T
Sbjct: 295 PQNRQFLMFSATFPVT-----VKAFKD-RHLRKPYVINLMDQLTLMGV----------TQ 338
Query: 259 DTAFLNKKA---ALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHA 315
AF+ ++ L L + + ++I+FCN + +VE +I + G HA
Sbjct: 339 YYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVN---RVELLAKKITELG--YSCFYIHA 393
Query: 316 AMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
M Q+ R F + +VCTD +RGID VN VI FDFPR Y
Sbjct: 394 KMVQDHRNRVFHEFRNGACRN----LVCTDLFTRGIDIQAVNVVINFDFPRTSESY 445
>AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:17705382-17708744
FORWARD LENGTH=633
Length = 633
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 116/417 (27%), Positives = 188/417 (45%), Gaps = 54/417 (12%)
Query: 10 DNNFFSVKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTL 69
DN V +F +I + + +++ + +P+ VQ A ++ G+ + Q+GSGKT
Sbjct: 152 DNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTA 211
Query: 70 AYLAPIIQRLKQEELEGRSKSSSQA-PRVVILAPTAELASQVLDNCRSMS-KSGVPFKSM 127
A+ PII + +++ R + S P VIL+PT ELASQ+ D + S ++GV K +
Sbjct: 212 AFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV--KVV 269
Query: 128 VVTGGFRQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDF 187
V GG QL L++GVD+L+ATPGR L++ + + +R LDE D +L D F
Sbjct: 270 VAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRML-DMGF 328
Query: 188 EGALQCLINSSLVDT----QYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLE- 242
E ++ ++ + Q L +AT P+ + RL F + + G R+ S +
Sbjct: 329 EPQIRKIVEQMDMPPRGVRQTLLFSATFPREI-QRLAADFLANYIFLAVG--RVGSSTDL 385
Query: 243 -----EVLVDCSGEDGQEKTPDTAFLNKKAALLQLVE-------ESPVPRTIVFCNRIET 290
E ++D +K++ L+ L+ + T+VF +ET
Sbjct: 386 IVQRVEFVLDS---------------DKRSHLMDLLHAQRENGIQGKQALTLVF---VET 427
Query: 291 CRKVENALNRIDKKGTRIQVLPFHAAMTQESRLASREGFT--RSPSKEVSQFMVCTDRAS 348
R ++ N + G H TQ+ R + + F R+P +V TD A+
Sbjct: 428 KRGADSLENWLCING--FPATSIHGDRTQQEREVALKAFKSGRTP------ILVATDVAA 479
Query: 349 RGIDFAEVNHVILFDFPRDPSEYXXXXXXXXXXXXXXXKAFIFVVGKQVSLARKIME 405
RG+D V HV+ FD P D +Y F G SLAR + E
Sbjct: 480 RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGN-TSLARPLAE 535
>AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:21657099-21660352
FORWARD LENGTH=646
Length = 646
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 174/371 (46%), Gaps = 41/371 (11%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
V +F +I + + ++Q + +P+ VQ A + AG+ + Q+GSGKT A+ PI
Sbjct: 145 VNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPI 204
Query: 76 IQR-LKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMS-KSGVPFKSMVVTGGF 133
I +K + +E P VIL+PT ELA Q+ D R S ++GV K +V GG
Sbjct: 205 ISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV--KVVVAYGGT 262
Query: 134 RQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQC 193
Q+ L++GVD+L+ATPGR L++ G + L +R LDE D +L D FE ++
Sbjct: 263 PVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRML-DMGFEPQIRK 321
Query: 194 LINSSLVDT----QYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCS 249
++ + Q + +AT P+ + RL F + + G R+ S + ++
Sbjct: 322 IVQQMDMPPPGVRQTMLFSATFPREI-QRLASDFLSNYIFLAVG--RVGSSTDLIVQRV- 377
Query: 250 GEDGQEKTPDTAFLNKKAALLQLVE-------ESPVPRTIVFCNRIETCRKVENALNRID 302
E D+ +K++ L+ L+ + T+VF + +EN L
Sbjct: 378 -----EFVHDS---DKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCING 429
Query: 303 KKGTRIQVLPFHAAMTQESRLASREGFT--RSPSKEVSQFMVCTDRASRGIDFAEVNHVI 360
T I H +Q+ R + F R+P +V TD A+RG+D V HV+
Sbjct: 430 FPATTI-----HGDRSQQEREVALRSFKTGRTP------ILVATDVAARGLDIPHVAHVV 478
Query: 361 LFDFPRDPSEY 371
FD P D +Y
Sbjct: 479 NFDLPNDIDDY 489
>AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25319798-25322071
REVERSE LENGTH=484
Length = 484
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 164/341 (48%), Gaps = 35/341 (10%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
+K F+D DN+++++ FT P+ +QA + + G+ + ++GSGKTLAYL P
Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 223
Query: 76 IQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMS-KSGVPFKSMVVTGGFR 134
+ + + G+ P V+ILAPT ELA Q+ + R +SGV +S + GG
Sbjct: 224 LVHVSAQPRLGQ----DDGPIVLILAPTRELAVQIQEESRKFGLRSGV--RSTCIYGGAP 277
Query: 135 QRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCL 194
+ Q+ L++GV+++IATPGR + +++ L + VLDE D +L D FE ++ +
Sbjct: 278 KGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRML-DMGFEPQIRKI 336
Query: 195 INSSLVDTQYLFVTATLPKNVYSRLVEVFPD-CEMIMGPGMHRISSRLEEVLVDCSGEDG 253
++ D Q L +AT P+ V + + D + I+G + + + +V+
Sbjct: 337 VSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVI-------- 388
Query: 254 QEKTPDTAFLNKKAALL-QLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLP 312
E P N+ LL QL++ S + ++F C +V L R+D L
Sbjct: 389 -EIVPTPEKYNRLLTLLKQLMDGS---KILIFVETKRGCDQVTRQL-RMDG----WPALA 439
Query: 313 FHAAMTQESRLASREGFT--RSPSKEVSQFMVCTDRASRGI 351
H TQ R F RSP M TD A+RG+
Sbjct: 440 IHGDKTQSERDRVLAEFKSGRSP------IMTATDVAARGL 474
>AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 167/361 (46%), Gaps = 49/361 (13%)
Query: 19 FKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQR 78
F+D ++ + + F RPS +Q + + G+ + ++G+GKT A+ P++++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 79 LKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQ 138
+ Q+ + + VI+ PT ELA Q C+ + K + + MV TGG +
Sbjct: 193 IDQD---------NNVIQAVIIVPTRELALQTSQVCKELGKH-LKIQVMVTTGGTSLKDD 242
Query: 139 LESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINSS 198
+ L Q V +L+ TPGR L L K+G L + V+DE D LL E F+ +++ LI+
Sbjct: 243 IMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQE-FQPSVEHLISFL 301
Query: 199 LVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKTP 258
Q L +AT P V F D + P + + ++E+ + + T
Sbjct: 302 PESRQILMFSATFPVTVKD-----FKD-RFLTNP---YVINLMDELTL-------KGITQ 345
Query: 259 DTAFLNKKA---ALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPF-- 313
AF+ ++ L L + + ++I+FC N++NR++ +I L +
Sbjct: 346 FYAFVEERQKIHCLNTLFSKLQINQSIIFC----------NSVNRVELLAKKITELGYSC 395
Query: 314 ---HAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSE 370
HA M Q+ R F + +VCTD +RGID VN VI FDFP++
Sbjct: 396 FYIHAKMLQDHRNRVFHDFRNGACRN----LVCTDLFTRGIDIQAVNVVINFDFPKNAET 451
Query: 371 Y 371
Y
Sbjct: 452 Y 452
>AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 167/361 (46%), Gaps = 49/361 (13%)
Query: 19 FKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQR 78
F+D ++ + + F RPS +Q + + G+ + ++G+GKT A+ P++++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 79 LKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQ 138
+ Q+ + + VI+ PT ELA Q C+ + K + + MV TGG +
Sbjct: 193 IDQD---------NNVIQAVIIVPTRELALQTSQVCKELGKH-LKIQVMVTTGGTSLKDD 242
Query: 139 LESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINSS 198
+ L Q V +L+ TPGR L L K+G L + V+DE D LL E F+ +++ LI+
Sbjct: 243 IMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQE-FQPSVEHLISFL 301
Query: 199 LVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKTP 258
Q L +AT P V F D + P + + ++E+ + + T
Sbjct: 302 PESRQILMFSATFPVTVKD-----FKD-RFLTNP---YVINLMDELTL-------KGITQ 345
Query: 259 DTAFLNKKA---ALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPF-- 313
AF+ ++ L L + + ++I+FC N++NR++ +I L +
Sbjct: 346 FYAFVEERQKIHCLNTLFSKLQINQSIIFC----------NSVNRVELLAKKITELGYSC 395
Query: 314 ---HAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSE 370
HA M Q+ R F + +VCTD +RGID VN VI FDFP++
Sbjct: 396 FYIHAKMLQDHRNRVFHDFRNGACRN----LVCTDLFTRGIDIQAVNVVINFDFPKNAET 451
Query: 371 Y 371
Y
Sbjct: 452 Y 452
>AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:18859836-18862318 FORWARD LENGTH=528
Length = 528
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 162/356 (45%), Gaps = 39/356 (10%)
Query: 19 FKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQR 78
F+D ++++ + + F +PS +Q + + G + ++G+GKT A+ P +++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 79 LKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQ 138
+ E + + VIL PT ELA Q C+ +SK + + MV TGG R
Sbjct: 216 IDPE---------NNVIQAVILVPTRELALQTSQVCKELSKY-LKIEVMVTTGGTSLRDD 265
Query: 139 LESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINSS 198
+ L Q V +L+ TPGR L L K+G L + V+DE D LL E F+ +++ LI
Sbjct: 266 IMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVE-FQPSIEELIQFL 324
Query: 199 LVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKTP 258
Q L +AT P V S F D + P + + +L + V T
Sbjct: 325 PESRQILMFSATFPVTVKS-----FKD-RYLKKPYIINLMDQLTLMGV----------TQ 368
Query: 259 DTAFLNKKA---ALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHA 315
AF+ ++ L L + + ++I+FCN + +VE +I + G HA
Sbjct: 369 YYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVN---RVELLAKKITELG--YSCFYIHA 423
Query: 316 AMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
M Q+ R F + +VCTD +RGID VN VI FDFPR Y
Sbjct: 424 KMVQDHRNRVFHDFRNGACRN----LVCTDLFTRGIDIQAVNVVINFDFPRTSESY 475
>AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=645
Length = 645
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 170/357 (47%), Gaps = 32/357 (8%)
Query: 18 SFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQ 77
SF+ G + +++ + + F+ PS +QA ++ + + V ++GSGKTL YL P
Sbjct: 162 SFEATGLPNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFM 221
Query: 78 RLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRT 137
L++ + R P +++L+PT ELA+Q+ KS + GG +
Sbjct: 222 HLQRIHNDSR-----MGPTILVLSPTRELATQIQVEALKFGKSSK-ISCACLYGGAPKGP 275
Query: 138 QLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINS 197
QL+ +++GVD+++ATPGR +++ + L + VLDE D +L D FE ++ ++N
Sbjct: 276 QLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRML-DMGFEPQIRKIVNE 334
Query: 198 SLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKT 257
Q L TAT PK V R + ++++ P I + ++E++ + S E
Sbjct: 335 VPTKRQTLMYTATWPKEV--RKIA----ADLLVNPAQVNIGN-VDELVANKSITQTIEV- 386
Query: 258 PDTAFLNKKAALLQLV-EESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHAA 316
A + K + L Q++ + P + I+FC+ C ++ L R H
Sbjct: 387 --LAPMEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT------FGAAAIHGD 438
Query: 317 MTQESRLASREGF--TRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
+Q R F R+P +V TD A+RG+D ++ V+ +DFP +Y
Sbjct: 439 KSQAERDDVLNQFRSGRTP------VLVATDVAARGLDVKDIRVVVNYDFPNGVEDY 489
>AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479921-11482707 FORWARD LENGTH=537
Length = 537
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 186/370 (50%), Gaps = 42/370 (11%)
Query: 13 FFSVKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYL 72
+ ++K+F + +NV+ + +F +PS +Q+ + ++ G+ + ++GSGKTLA+
Sbjct: 112 YAALKTFAESNLPENVLDCCK--TFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFG 169
Query: 73 APIIQRL--KQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVP--FKSMV 128
P I + K +++ G SK + P ++L+PT ELA Q+ D R ++G P KS+
Sbjct: 170 IPAIMHVLKKNKKIGGGSKKVN--PTCLVLSPTRELAVQISDVLR---EAGEPCGLKSIC 224
Query: 129 VTGGFRQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFE 188
V GG + Q+ +++ GVD++I TPGR LI+ L+L+++ VLDE D +L D FE
Sbjct: 225 VYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRML-DMGFE 283
Query: 189 GALQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPD---CEMIMGP---GMHRISSRLE 242
++ +++++ Q + +AT P +V+ +L + F D ++I+G + ++
Sbjct: 284 EPVRFILSNTNKVRQMVMFSATWPLDVH-KLAQEFMDPNPIKVIIGSVDLAANHDVMQII 342
Query: 243 EVLVDCSGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRID 302
EVL E+ D + ALL+ +S R +VF ++E L +
Sbjct: 343 EVL--------DERARDQRLI----ALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRG 390
Query: 303 KKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVS-QFMVCTDRASRGIDFAEVNHVIL 361
K I H Q R S F KE S +V TD A+RG+D +V VI
Sbjct: 391 WKAVSI-----HGNKAQSERTRSLSLF-----KEGSCPLLVATDVAARGLDIPDVEVVIN 440
Query: 362 FDFPRDPSEY 371
+ FP +Y
Sbjct: 441 YTFPLTTEDY 450
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 171/360 (47%), Gaps = 38/360 (10%)
Query: 18 SFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAP--- 74
SF+ G +++ + + F+ P+ +QA ++ + G+ V ++GSGKTL YL P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 75 IIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFR 134
+QR++ + S P +++L+PT ELA+Q+ + +S + GG
Sbjct: 219 HLQRIRND--------SRMGPTILVLSPTRELATQIQEEAVKFGRSSR-ISCTCLYGGAP 269
Query: 135 QRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCL 194
+ QL L++G D+++ATPGR +++ + L + VLDE D +L D FE ++ +
Sbjct: 270 KGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRML-DMGFEPQIRKI 328
Query: 195 INSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQ 254
+ Q L TAT PK V R + ++++ P I + ++E++ + S
Sbjct: 329 VKEIPTKRQTLMYTATWPKGV--RKIA----ADLLVNPAQVNIGN-VDELVANKSITQHI 381
Query: 255 EKTPDTAFLNKKAALLQLVE-ESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPF 313
E A + K+ L Q++ + P + I+FC+ C ++ L R +
Sbjct: 382 EV---VAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTR------QFGAAAI 432
Query: 314 HAAMTQESRLASREGF--TRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
H +Q R F R+P +V TD A+RG+D ++ V+ +DFP +Y
Sbjct: 433 HGDKSQPERDNVLNQFRSGRTP------VLVATDVAARGLDVKDIRAVVNYDFPNGVEDY 486
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 171/360 (47%), Gaps = 38/360 (10%)
Query: 18 SFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAP--- 74
SF+ G +++ + + F+ P+ +QA ++ + G+ V ++GSGKTL YL P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 75 IIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFR 134
+QR++ + S P +++L+PT ELA+Q+ + +S + GG
Sbjct: 219 HLQRIRND--------SRMGPTILVLSPTRELATQIQEEAVKFGRSSR-ISCTCLYGGAP 269
Query: 135 QRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCL 194
+ QL L++G D+++ATPGR +++ + L + VLDE D +L D FE ++ +
Sbjct: 270 KGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRML-DMGFEPQIRKI 328
Query: 195 INSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQ 254
+ Q L TAT PK V R + ++++ P I + ++E++ + S
Sbjct: 329 VKEIPTKRQTLMYTATWPKGV--RKIA----ADLLVNPAQVNIGN-VDELVANKSITQHI 381
Query: 255 EKTPDTAFLNKKAALLQLVE-ESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPF 313
E A + K+ L Q++ + P + I+FC+ C ++ L R +
Sbjct: 382 EV---VAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTR------QFGAAAI 432
Query: 314 HAAMTQESRLASREGF--TRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
H +Q R F R+P +V TD A+RG+D ++ V+ +DFP +Y
Sbjct: 433 HGDKSQPERDNVLNQFRSGRTP------VLVATDVAARGLDVKDIRAVVNYDFPNGVEDY 486
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 171/360 (47%), Gaps = 38/360 (10%)
Query: 18 SFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAP--- 74
SF+ G +++ + + F+ P+ +QA ++ + G+ V ++GSGKTL YL P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 75 IIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFR 134
+QR++ + S P +++L+PT ELA+Q+ + +S + GG
Sbjct: 219 HLQRIRND--------SRMGPTILVLSPTRELATQIQEEAVKFGRSSR-ISCTCLYGGAP 269
Query: 135 QRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCL 194
+ QL L++G D+++ATPGR +++ + L + VLDE D +L D FE ++ +
Sbjct: 270 KGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRML-DMGFEPQIRKI 328
Query: 195 INSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQ 254
+ Q L TAT PK V R + ++++ P I + ++E++ + S
Sbjct: 329 VKEIPTKRQTLMYTATWPKGV--RKIA----ADLLVNPAQVNIGN-VDELVANKSITQHI 381
Query: 255 EKTPDTAFLNKKAALLQLVE-ESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPF 313
E A + K+ L Q++ + P + I+FC+ C ++ L R +
Sbjct: 382 EV---VAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTR------QFGAAAI 432
Query: 314 HAAMTQESRLASREGF--TRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
H +Q R F R+P +V TD A+RG+D ++ V+ +DFP +Y
Sbjct: 433 HGDKSQPERDNVLNQFRSGRTP------VLVATDVAARGLDVKDIRAVVNYDFPNGVEDY 486
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=618
Length = 618
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 171/360 (47%), Gaps = 38/360 (10%)
Query: 18 SFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAP--- 74
SF+ G +++ + + F+ P+ +QA ++ + G+ V ++GSGKTL YL P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 75 IIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFR 134
+QR++ + S P +++L+PT ELA+Q+ + +S + GG
Sbjct: 219 HLQRIRND--------SRMGPTILVLSPTRELATQIQEEAVKFGRSSR-ISCTCLYGGAP 269
Query: 135 QRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCL 194
+ QL L++G D+++ATPGR +++ + L + VLDE D +L D FE ++ +
Sbjct: 270 KGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRML-DMGFEPQIRKI 328
Query: 195 INSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQ 254
+ Q L TAT PK V R + ++++ P I + ++E++ + S
Sbjct: 329 VKEIPTKRQTLMYTATWPKGV--RKIA----ADLLVNPAQVNIGN-VDELVANKSITQHI 381
Query: 255 EKTPDTAFLNKKAALLQLVE-ESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPF 313
E A + K+ L Q++ + P + I+FC+ C ++ L R +
Sbjct: 382 EV---VAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTR------QFGAAAI 432
Query: 314 HAAMTQESRLASREGF--TRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
H +Q R F R+P +V TD A+RG+D ++ V+ +DFP +Y
Sbjct: 433 HGDKSQPERDNVLNQFRSGRTP------VLVATDVAARGLDVKDIRAVVNYDFPNGVEDY 486
>AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=748
Length = 748
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 160/347 (46%), Gaps = 32/347 (9%)
Query: 30 QSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQRLKQEELEGRS- 88
+SL+ + T +Q P + G+ + ++G+GKTLA+ PII+RL +E + +
Sbjct: 115 ESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAF 174
Query: 89 KSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMV-VTGGFRQRTQLESLQQGVD 147
+ S + P+ ++LAPT ELA QV K P+ S V V GG Q +L +GVD
Sbjct: 175 RRSGRLPKFLVLAPTRELAKQVEKEI----KESAPYLSTVCVYGGVSYTIQQSALTRGVD 230
Query: 148 VLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINSSLVDTQYLFV 207
V++ TPGR + LI+ L+L + VLDE D +L FE A++ ++ + Q +
Sbjct: 231 VVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLA-VGFEEAVESILENLPTKRQSMLF 289
Query: 208 TATLPKNVYSRLVEVFPDCEM---IMGPGMHRISSRLEEVLVDCSGEDGQEKTPDTAFLN 264
+AT+P V +L + D + ++G +++ ++ + + + D +
Sbjct: 290 SATMPTWV-KKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVY 348
Query: 265 KKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHAAMTQESRLA 324
K +TIVF +V AL+ I H ++Q R
Sbjct: 349 AKGG-----------KTIVFTQTKRDADEVSLALS------NSIATEALHGDISQHQRER 391
Query: 325 SREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
+ F + +V TD ASRG+D V+ VI ++ P DP +
Sbjct: 392 TLNAFRQGK----FTVLVATDVASRGLDIPNVDLVIHYELPNDPETF 434
>AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=747
Length = 747
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 160/347 (46%), Gaps = 32/347 (9%)
Query: 30 QSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQRLKQEELEGRS- 88
+SL+ + T +Q P + G+ + ++G+GKTLA+ PII+RL +E + +
Sbjct: 115 ESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAF 174
Query: 89 KSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMV-VTGGFRQRTQLESLQQGVD 147
+ S + P+ ++LAPT ELA QV K P+ S V V GG Q +L +GVD
Sbjct: 175 RRSGRLPKFLVLAPTRELAKQVEKEI----KESAPYLSTVCVYGGVSYTIQQSALTRGVD 230
Query: 148 VLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINSSLVDTQYLFV 207
V++ TPGR + LI+ L+L + VLDE D +L FE A++ ++ + Q +
Sbjct: 231 VVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLA-VGFEEAVESILENLPTKRQSMLF 289
Query: 208 TATLPKNVYSRLVEVFPDCEM---IMGPGMHRISSRLEEVLVDCSGEDGQEKTPDTAFLN 264
+AT+P V +L + D + ++G +++ ++ + + + D +
Sbjct: 290 SATMPTWV-KKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVY 348
Query: 265 KKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHAAMTQESRLA 324
K +TIVF +V AL+ I H ++Q R
Sbjct: 349 AKGG-----------KTIVFTQTKRDADEVSLALS------NSIATEALHGDISQHQRER 391
Query: 325 SREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
+ F + +V TD ASRG+D V+ VI ++ P DP +
Sbjct: 392 TLNAFRQGK----FTVLVATDVASRGLDIPNVDLVIHYELPNDPETF 434
>AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 163/363 (44%), Gaps = 36/363 (9%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
V +F G ++ +L+ + P+ +Q A + GK+ + S +GSGKT ++L PI
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 76 IQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQ 135
I R E S + P ++LAPT EL QV D + + K G+PFK+ +V GG
Sbjct: 169 ISRCTTYHSEHPS-DQRRNPLAMVLAPTRELCVQVEDQAKMLGK-GLPFKTALVVGGDPM 226
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLI 195
QL +QQGV+++I TPGR + L+ + ++L N+ VLDEVD +L + +Q I
Sbjct: 227 SGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQ--I 284
Query: 196 NSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQE 255
+L Q L +AT+ + V E + G S E +LV +
Sbjct: 285 FQALSQPQVLLFSATISREV-----------EKVGG------SLAKEIILVSIGNPNKPN 327
Query: 256 KTPDTAFL-----NKKAALLQLV--EESPVPRTIVFCNRIETCRKVENALNRIDKKGTRI 308
K + + KK L ++ + P +V+ + + NA+ + T +
Sbjct: 328 KAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAITVV----TGV 383
Query: 309 QVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDP 368
+ L H + R R+ EV +V T RG+D V VI+FD P
Sbjct: 384 KALSIHGEKPMKER---RDVMGSFLGGEVP-VLVSTGVLGRGVDLLVVRQVIVFDMPSTI 439
Query: 369 SEY 371
EY
Sbjct: 440 KEY 442
>AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 163/363 (44%), Gaps = 36/363 (9%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
V +F G ++ +L+ + P+ +Q A + GK+ + S +GSGKT ++L PI
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 76 IQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQ 135
I R E S + P ++LAPT EL QV D + + K G+PFK+ +V GG
Sbjct: 169 ISRCTTYHSEHPS-DQRRNPLAMVLAPTRELCVQVEDQAKMLGK-GLPFKTALVVGGDPM 226
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLI 195
QL +QQGV+++I TPGR + L+ + ++L N+ VLDEVD +L + +Q I
Sbjct: 227 SGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQ--I 284
Query: 196 NSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQE 255
+L Q L +AT+ + V E + G S E +LV +
Sbjct: 285 FQALSQPQVLLFSATISREV-----------EKVGG------SLAKEIILVSIGNPNKPN 327
Query: 256 KTPDTAFL-----NKKAALLQLV--EESPVPRTIVFCNRIETCRKVENALNRIDKKGTRI 308
K + + KK L ++ + P +V+ + + NA+ + T +
Sbjct: 328 KAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAITVV----TGV 383
Query: 309 QVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDP 368
+ L H + R R+ EV +V T RG+D V VI+FD P
Sbjct: 384 KALSIHGEKPMKER---RDVMGSFLGGEVP-VLVSTGVLGRGVDLLVVRQVIVFDMPSTI 439
Query: 369 SEY 371
EY
Sbjct: 440 KEY 442
>AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:19047960-19049967 FORWARD LENGTH=392
Length = 392
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 163/356 (45%), Gaps = 31/356 (8%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
+KSF D+G +D V++ + + + +PS +Q A P++ G+ + QSG+GKT +
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 76 IQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQ 135
Q + SS+ +V++L+P+ ELASQ +++ + ++ GG
Sbjct: 81 CQIV---------NISSRKVQVLVLSPSRELASQTEKTIQAIG-AHTNIQAHACIGGKSI 130
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLI 195
++ L++GV + TPGR +IK G LQ ++ VLDE D +L + + + +
Sbjct: 131 GEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLS-KGLKDQIYDVY 189
Query: 196 NSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQE 255
+ D Q ++ATLP+ + + D I+ +++ VD D +E
Sbjct: 190 RALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDV---DKEE 246
Query: 256 KTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHA 315
DT L L + + I+FCN T +KV+ ++ + + V H
Sbjct: 247 WKFDT--------LCDLYGRLTINQAIIFCN---TRQKVDWLTEKM--RSSNFIVSSMHG 293
Query: 316 AMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
Q+ R F S+ ++ +D +RGID V+HVI +D P +P Y
Sbjct: 294 DKRQKERDDIMNQFRSFKSR----VLIASDVWARGIDVQTVSHVINYDIPNNPELY 345
>AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:24546601-24549148 REVERSE LENGTH=456
Length = 456
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 167/361 (46%), Gaps = 29/361 (8%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
VK+F ++G + ++++ + + PS +QA A + GK + Q+GSGKT A+ PI
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67
Query: 76 IQRLKQEELEGRSKSSSQ---APRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGG 132
+Q L + + K + A +L+PT ELA Q+ + ++ + + + V+ GG
Sbjct: 68 LQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALG-ADISLRCAVLVGG 126
Query: 133 FRQRTQLESLQQGVDVLIATPGRFLFLIKE--GFLQLTNLRCAVLDEVDILLGDEDFEGA 190
+ Q +L + V++ATPGR + + GF L +L+ VLDE D LL +EDFE +
Sbjct: 127 IDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGF-SLKSLKYLVLDEADRLL-NEDFEKS 184
Query: 191 LQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSG 250
L ++ ++ + +AT+ K V + R ++E +
Sbjct: 185 LNQILEEIPLERKTFLFSATMTKKVRK------------LQRACLRNPVKIEAASKYSTV 232
Query: 251 EDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQV 310
+ +++ A K L+ ++ E P +++F + R + L + +
Sbjct: 233 DTLKQQYRFVAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLG-----FRA 287
Query: 311 LPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSE 370
+P MTQ RL + F +VCTD ASRG+D V+ VI +D P + +
Sbjct: 288 IPISGQMTQSKRLGALNKFKAGE----CNILVCTDVASRGLDIPSVDVVINYDIPTNSKD 343
Query: 371 Y 371
Y
Sbjct: 344 Y 344
>AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |
chr3:1985697-1989666 REVERSE LENGTH=1088
Length = 1088
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 160/354 (45%), Gaps = 26/354 (7%)
Query: 18 SFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQ 77
+F+ G +++ L + F P+ +QA + + + V ++GSGKTL YL P
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 78 RLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRT 137
L+ + R+ P V+ILAPT ELA+Q+ D +S + GG +
Sbjct: 496 LLRHCRNDSRN-----GPTVLILAPTRELATQIQDEALRFGRSSR-ISCTCLYGGAPKGP 549
Query: 138 QLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINS 197
QL+ L++G D+++ATPGR +++ + + VLDE D +L D FE ++ ++N
Sbjct: 550 QLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRML-DMGFEPQIRKIVNE 608
Query: 198 SLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKT 257
Q L TAT PK V R + ++++ P I R++E+ + + E
Sbjct: 609 IPPRRQTLMYTATWPKEV--RKIA----SDLLVNPVQVNI-GRVDELAANKAITQYVEVV 661
Query: 258 PDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHAAM 317
P + +L+ E + I+FC+ C + ++ R + H
Sbjct: 662 PQMEKERRLEQILRSQERG--SKVIIFCSTKRLCDHLARSVGR------HFGAVVIHGDK 713
Query: 318 TQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
TQ R F S ++ TD A+RG+D ++ VI +DFP +Y
Sbjct: 714 TQGERDWVLNQFRSG----KSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDY 763
>AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288618 REVERSE LENGTH=655
Length = 655
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 152/327 (46%), Gaps = 32/327 (9%)
Query: 50 PVIAGKTCVISDQSGSGKTLAYLAPIIQRLKQEELEGRS-KSSSQAPRVVILAPTAELAS 108
P + G+ + ++G+GKTLA+ PII+RL +E + + + S + P+ ++LAPT ELA
Sbjct: 42 PALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAK 101
Query: 109 QVLDNCRSMSKSGVPFKSMV-VTGGFRQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQL 167
QV K P+ S V V GG Q +L +GVDV++ TPGR + LI+ L+L
Sbjct: 102 QVEKEI----KESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKL 157
Query: 168 TNLRCAVLDEVDILLGDEDFEGALQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCE 227
+ VLDE D +L FE A++ ++ + Q + +AT+P V +L + D
Sbjct: 158 GEVEYLVLDEADQMLA-VGFEEAVESILENLPTKRQSMLFSATMPTWV-KKLARKYLDNP 215
Query: 228 M---IMGPGMHRISSRLEEVLVDCSGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVF 284
+ ++G +++ ++ + + + D + K +TIVF
Sbjct: 216 LNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGG-----------KTIVF 264
Query: 285 CNRIETCRKVENALNRIDKKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCT 344
+V AL+ I H ++Q R + F + +V T
Sbjct: 265 TQTKRDADEVSLALS------NSIATEALHGDISQHQRERTLNAFRQGK----FTVLVAT 314
Query: 345 DRASRGIDFAEVNHVILFDFPRDPSEY 371
D ASRG+D V+ VI ++ P DP +
Sbjct: 315 DVASRGLDIPNVDLVIHYELPNDPETF 341
>AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=712
Length = 712
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 160/339 (47%), Gaps = 32/339 (9%)
Query: 36 SFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQRLKQEELEGRSKSSSQAP 95
F+ PS +QA ++ + + V ++GSGKTL YL P L++ + R P
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-----MGP 302
Query: 96 RVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQLESLQQGVDVLIATPGR 155
+++L+PT ELA+Q+ KS + GG + QL+ +++GVD+++ATPGR
Sbjct: 303 TILVLSPTRELATQIQVEALKFGKSSK-ISCACLYGGAPKGPQLKEIERGVDIVVATPGR 361
Query: 156 FLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINSSLVDTQYLFVTATLPKNV 215
+++ + L + VLDE D +L D FE ++ ++N Q L TAT PK V
Sbjct: 362 LNDILEMKRISLHQVSYLVLDEADRML-DMGFEPQIRKIVNEVPTKRQTLMYTATWPKEV 420
Query: 216 YSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKTPDTAFLNKKAALLQLV-E 274
R + ++++ P I + ++E++ + S E A + K + L Q++
Sbjct: 421 --RKIA----ADLLVNPAQVNIGN-VDELVANKSITQTIEV---LAPMEKHSRLEQILRS 470
Query: 275 ESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHAAMTQESRLASREGF--TRS 332
+ P + I+FC+ C ++ L R H +Q R F R+
Sbjct: 471 QEPGSKIIIFCSTKRMCDQLARNLTRT------FGAAAIHGDKSQAERDDVLNQFRSGRT 524
Query: 333 PSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
P +V TD A+RG+D ++ V+ +DFP +Y
Sbjct: 525 P------VLVATDVAARGLDVKDIRVVVNYDFPNGVEDY 557
>AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides, in
phosphorus-containing anhydrides;ATP-dependent
helicases;nucleic acid binding;ATP binding;RNA
binding;helicases | chr1:28947887-28951526 REVERSE
LENGTH=845
Length = 845
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 166/355 (46%), Gaps = 37/355 (10%)
Query: 19 FKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQR 78
F+ + NV +++ + + P+ +Q +++G V ++GSGKT A+L P++++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 79 LKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQ 138
LKQ +G R +IL+PT +LA Q L + + K + ++ GG Q
Sbjct: 90 LKQHVPQG-------GVRALILSPTRDLAEQTLKFTKELGKF-TDLRVSLLVGGDSMEDQ 141
Query: 139 LESLQQGVDVLIATPGRFLFLIKE-GFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINS 197
E L +G DV+IATPGR + L+ E + L + V DE D L G F L ++
Sbjct: 142 FEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFG-MGFAEQLHQILTQ 200
Query: 198 SLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKT 257
+ Q L +ATLP + + +++ ++IS L+ + E+
Sbjct: 201 LSENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEE----- 255
Query: 258 PDTAFLNKKAALLQLVEE--SPVPRTIVFCNRIETCRKVE--NALNRIDKKGTRIQVLPF 313
K +ALL LV E S +T++F + T VE N+L +++ I+
Sbjct: 256 -------KYSALLYLVREHISSDQQTLIF---VSTKHHVEFVNSLFKLEN----IEPSVC 301
Query: 314 HAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDP 368
+ M Q++R F + ++ TD A+RGID +++VI +DFP P
Sbjct: 302 YGDMDQDARKIHVSRF----RARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRP 352
>AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265679-14267880
REVERSE LENGTH=733
Length = 733
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 173/372 (46%), Gaps = 39/372 (10%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
++S+++ + ++++++ + +PS +Q A + + + ++GSGKT A++ P+
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371
Query: 76 ---IQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGG 132
I RL E + ++ P V++APT ELA Q+ + + + F+ + GG
Sbjct: 372 LAYISRLPPMSEE----NETEGPYAVVMAPTRELAQQIEEETVKFAHY-LGFRVTSIVGG 426
Query: 133 FRQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFE---- 188
Q + QG +++IATPGR + ++ + L VLDE D ++ D FE
Sbjct: 427 QSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMI-DMGFEPQVA 485
Query: 189 GALQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSR-LEEVLVD 247
G L + +S+L K +Y R +F M PG+ R++ + L +V
Sbjct: 486 GVLDAMPSSNL--KPENEEEELDEKKIY-RTTYMF---SATMPPGVERLARKYLRNPVVV 539
Query: 248 CSGEDGQEKTPD----TAFLNKKAA----LLQLVEESPVPRTIVFCNRIETCRKVENALN 299
G G KT D + K++ L +L++E IVF N + C + L
Sbjct: 540 TIGTAG--KTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNL- 596
Query: 300 RIDKKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHV 359
DK G R+ L H +QE R S EGF R+ V +V TD RGID +V HV
Sbjct: 597 --DKAGYRVTTL--HGGKSQEQREISLEGF-RAKRYNV---LVATDVVGRGIDIPDVAHV 648
Query: 360 ILFDFPRDPSEY 371
I +D P+ Y
Sbjct: 649 INYDMPKHIEMY 660
>AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7286356-7288842
FORWARD LENGTH=828
Length = 828
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 170/360 (47%), Gaps = 31/360 (8%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
+K + G + ++ +++ ++ +P +Q A +++G+ C+ ++GSGKTL ++ P+
Sbjct: 190 IKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPM 249
Query: 76 IQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQ 135
++ +K + + P +++APT EL Q+ + R SK + + + V GG
Sbjct: 250 LRHIKDQP----PVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKP-LGIRCVPVYGGSGV 304
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCA---VLDEVDILLGDEDFEGALQ 192
Q+ L++G ++++ TPGR + ++ ++TNLR V+DE D + D FE +
Sbjct: 305 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMF-DMGFEPQIT 363
Query: 193 CLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGED 252
+I + + Q + +AT P+ V + +V I G ++ + + LV+ E
Sbjct: 364 RIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPES 422
Query: 253 GQEKTPDTAFLNKKAALLQLV-EESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVL 311
+ FL LL+L+ E S + +VF E C +AL R D + L
Sbjct: 423 DR-------FLR----LLELLGEWSEKGKILVFVQSQEKC----DALYR-DMIKSSYPCL 466
Query: 312 PFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
H Q R ++ F +V ++ T A+RG+D E+ V+ FD P +Y
Sbjct: 467 SLHGGKDQTDRESTISDF----KNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDY 522
>AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:26358328-26361244 FORWARD LENGTH=633
Length = 633
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 183/368 (49%), Gaps = 50/368 (13%)
Query: 17 KSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPII 76
K+F+ + SDN +S++ F R + +QA A P++ G+ + + ++GSGKTLA+L P +
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 77 QRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQR 136
+ L + + R+ + V+++ PT ELA Q + + K V+ GG +++
Sbjct: 214 ELLYRVKFTPRNGTG-----VLVICPTRELAIQSYGVAKELLKYHSQTVGKVI-GGEKRK 267
Query: 137 TQLESLQQGVDVLIATPGRFLFLIK--EGFLQLTNLRCAVLDEVDILLGDEDFEGALQCL 194
T+ E L +GV++L+ATPGR L ++ GF+ NL+ V+DE D +L +++FE L+ +
Sbjct: 268 TEAEILAKGVNLLVATPGRLLDHLENTNGFI-FKNLKFLVMDEADRIL-EQNFEEDLKKI 325
Query: 195 INSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQ 254
+N LPK +R +F + + R+ S V +D ++G+
Sbjct: 326 LN-------------LLPK---TRQTSLFSATQSAKVEDLARV-SLTSPVYIDV--DEGR 366
Query: 255 EKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFH 314
++ + + + + + F R + +K+ + K T+ FH
Sbjct: 367 KEVTNEGLEQGYCVVPSAMR---LLFLLTFLKRFQGKKKIMVFFSTC--KSTK-----FH 416
Query: 315 AAMTQESR---LASREGF---TRSPS-----KEVSQFMVCTDRASRGIDFAEVNHVILFD 363
A + + + L R G R+P+ K + ++CT+ A+RG+DF V+ ++ +D
Sbjct: 417 AELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYD 476
Query: 364 FPRDPSEY 371
P +P++Y
Sbjct: 477 PPDNPTDY 484
>AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:6399724-6403007
REVERSE LENGTH=568
Length = 568
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 105/424 (24%), Positives = 193/424 (45%), Gaps = 58/424 (13%)
Query: 18 SFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQ 77
+F + S+ +++ F + +QA + P++ GK + + ++GSGKTLA+L P ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 78 RLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRT 137
L +E R+ + V+++ PT ELA Q + + K SMV+ GG +R+
Sbjct: 150 LLFKERFSPRNGTG-----VIVICPTRELAIQTKNVAEELLKHHSQTVSMVI-GGNNRRS 203
Query: 138 QLESLQQGVDVLIATPGRFLFLIK--EGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLI 195
+ + + G +++IATPGR L ++ + F+ +L+C V+DE D +L +E+FE + ++
Sbjct: 204 EAQRIASGSNLVIATPGRLLDHLQNTKAFI-YKHLKCLVIDEADRIL-EENFEEDMNKIL 261
Query: 196 NSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQE 255
LPK +R +F + + R+ S V VD +DG+
Sbjct: 262 K-------------ILPK---TRQTALFSATQTSKVKDLARV-SLTSPVHVDV--DDGRR 302
Query: 256 KTPDTAF---------LNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGT 306
K + + L+ ++++ + +VF TC+ V+ + K +
Sbjct: 303 KVTNEGLEQGYCVVPSKQRLILLISFLKKNLNKKIMVF---FSTCKSVQFHTEIM--KIS 357
Query: 307 RIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPR 366
+ V H M Q R + F ++ ++CTD A+RG+D V+ +I +D P
Sbjct: 358 DVDVSDIHGGMDQNRRTKTFFDFMKAK----KGILLCTDVAARGLDIPSVDWIIQYDPPD 413
Query: 367 DPSEYXXXXXXXXXXXXXXXKAFIFVVGKQVSLAR---------KIMERNRKGHPLHDVP 417
P+EY KA + ++ +++ R K +E N K L +V
Sbjct: 414 KPTEYIHRVGRTARGEGAKGKALLVLIPEELQFIRYLKAAKVPVKELEFNEK--RLSNVQ 471
Query: 418 SAFE 421
SA E
Sbjct: 472 SALE 475
>AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2980483-2983268
REVERSE LENGTH=541
Length = 541
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 167/364 (45%), Gaps = 43/364 (11%)
Query: 16 VKSFKDI----GCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAY 71
+KSF ++ GC ++++L F P+ +Q A +++G+ C +GSGKT A+
Sbjct: 136 LKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAF 195
Query: 72 LAPIIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTG 131
+ P++ +LK+ +G R VIL+P ELA+Q + + K G F ++T
Sbjct: 196 ICPMLIKLKRPSTDG--------IRAVILSPARELAAQTAREGKKLIK-GSNFHIRLMTK 246
Query: 132 GFRQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGAL 191
+ L DVLI+TP R IK + L+ + VLDE D L ++ +
Sbjct: 247 PLVKTADFSKLW--CDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLF-EQSLLKQI 303
Query: 192 QCLI----NSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVD 247
C++ N S++ + + +ATLP +V + D ++ + S +++ LV
Sbjct: 304 DCVVKACSNPSIIRSLF---SATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVF 360
Query: 248 CSGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTR 307
E+G K AL Q ES P ++F E +++ + L K
Sbjct: 361 AGSEEG-----------KLLALRQSFAESLNPPVLIFVQSKERAKELYDEL-----KCEN 404
Query: 308 IQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRD 367
I+ H+ + R + + F R+ K V ++ TD +RG+DF +N VI +DFP
Sbjct: 405 IRAGVIHSDLPPGERENAVDQF-RAGEKWV---LIATDVIARGMDFKGINCVINYDFPDS 460
Query: 368 PSEY 371
S Y
Sbjct: 461 ASAY 464
>AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7285342-7288842
FORWARD LENGTH=1166
Length = 1166
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 173/362 (47%), Gaps = 35/362 (9%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
+K + G + ++ +++ ++ +P +Q A +++G+ C+ ++GSGKTL ++ P+
Sbjct: 528 IKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPM 587
Query: 76 IQRLK-QEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFR 134
++ +K Q +E + P +++APT EL Q+ + R SK + + + V GG
Sbjct: 588 LRHIKDQPPVE-----AGDGPIGLVMAPTRELVQQIHSDIRKFSKP-LGIRCVPVYGGSG 641
Query: 135 QRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCA---VLDEVDILLGDEDFEGAL 191
Q+ L++G ++++ TPGR + ++ ++TNLR V+DE D + D FE +
Sbjct: 642 VAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMF-DMGFEPQI 700
Query: 192 QCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGE 251
+I + + Q + +AT P+ V + +V I G ++ + +++
Sbjct: 701 TRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLV------ 754
Query: 252 DGQEKTPDT-AFLNKKAALLQLV-EESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQ 309
E P++ FL LL+L+ E S + +VF E C +AL R D +
Sbjct: 755 ---EVRPESDRFLR----LLELLGEWSEKGKILVFVQSQEKC----DALYR-DMIKSSYP 802
Query: 310 VLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPS 369
L H Q R ++ F +V ++ T A+RG+D E+ V+ FD P
Sbjct: 803 CLSLHGGKDQTDRESTISDF----KNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYE 858
Query: 370 EY 371
+Y
Sbjct: 859 DY 860
>AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359628-360734
FORWARD LENGTH=368
Length = 368
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 149/332 (44%), Gaps = 36/332 (10%)
Query: 47 AFGPVIAGKTCVISDQSGSGKTLAYLAPIIQRLKQEELEGRSKSSSQAPRVVILAPTAEL 106
A + GK+ + S +GSGKT ++L PII R E S + P ++LAPT EL
Sbjct: 3 AIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPS-DQRRNPLAMVLAPTREL 61
Query: 107 ASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQ 166
QV D + + K G+PFK+ +V GG QL +QQGV+++I TPGR + L+ + ++
Sbjct: 62 CVQVEDQAKMLGK-GLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIE 120
Query: 167 LTNLRCAVLDEVDILLGDEDFEGALQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDC 226
L N+ VLDEVD +L + +Q I +L Q L +AT+ + V
Sbjct: 121 LDNIMTFVLDEVDCMLQRGFRDQVMQ--IFQALSQPQVLLFSATISREV----------- 167
Query: 227 EMIMGPGMHRISSRLEEVLVDCSGEDGQEKTPDTAFL-----NKKAALLQLV--EESPVP 279
E + G S E +LV + K + + KK L ++ + P
Sbjct: 168 EKVGG------SLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKP 221
Query: 280 RTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQ 339
+V+ + + NA+ + T ++ L H + R R+ EV
Sbjct: 222 PAVVYVSSRVGADLLANAITVV----TGVKALSIHGEKPMKER---RDVMGSFLGGEVP- 273
Query: 340 FMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
+V T RG+D V VI+FD P EY
Sbjct: 274 VLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEY 305
>AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863790-6866242 FORWARD LENGTH=408
Length = 408
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 157/356 (44%), Gaps = 31/356 (8%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
+ SF D+G ++V++ + F +PS +Q A P++ G+ + QSG+GKT +
Sbjct: 34 ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV 93
Query: 76 IQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQ 135
Q + +SS+ + +IL+PT ELA+Q +++ ++ GG
Sbjct: 94 CQVV---------DTSSREVQALILSPTRELATQTEKTIQAIGLHA-NIQAHACIGGNSV 143
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLI 195
+ L+ GV V+ TPGR +IK L+ ++ +LDE D +L F+ + +
Sbjct: 144 GEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLS-RGFKDQIYDVY 202
Query: 196 NSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQE 255
D Q V+ATLP + + + I+ + R LE + + +E
Sbjct: 203 RYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKIL---VKRDELTLEGIKQFFVAVEKEE 259
Query: 256 KTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHA 315
DT L L + + + ++FCN T RKV+ ++ + V H
Sbjct: 260 WKFDT--------LCDLYDTLTITQAVIFCN---TKRKVDYLSEKM--RSHNFTVSSMHG 306
Query: 316 AMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
M Q+ R A F S+ ++ TD +RGID +V+ VI +D P + Y
Sbjct: 307 DMPQKERDAIMNEFRSGDSR----VLITTDVWARGIDVQQVSLVINYDLPNNRELY 358
>AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:4351888-4353543 FORWARD LENGTH=551
Length = 551
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 103/409 (25%), Positives = 179/409 (43%), Gaps = 49/409 (11%)
Query: 1 MDNRKPSMPDNNFFSVKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVIS 60
+ +KP+ + FS KSF+++G D+++ SL+ + F+ P+ VQ+ A +I G VI
Sbjct: 94 VKEKKPAEIVSPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQ 153
Query: 61 DQSGSGKTLAYLAPIIQRLKQEELEGRSKSSSQAPRV----VILAPTAELASQVLDNCRS 116
+GSGKTLAYL PI+ + + RS S R +I+AP+ EL Q++
Sbjct: 154 SYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEK 213
Query: 117 MSKSGVPFKSMV--VTGGFRQRTQLESLQQGV-DVLIATPGRFLFLIKEGFLQLTNLRCA 173
+ G + MV + GG + Q E+L++ +++ TPGR + K G L R
Sbjct: 214 L--LGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFL 271
Query: 174 VLDEVDILLG---DEDFEGALQCLINSS----------LVDTQYLFVTATLPKNVYSRLV 220
VLDEVD LL ED L+ + S + Q + V+AT+P +V
Sbjct: 272 VLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAK 331
Query: 221 EVFPDCEMIMGPGMHRI-----SSRLEEVLVDCSGEDGQEKTPDTAF------------- 262
+ ++ + + S+ + + S DGQ +T +
Sbjct: 332 SWSHEPVLVQANKVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKH 391
Query: 263 LNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHAAMTQESR 322
+K L + V I F N R++++ + +++ +G + H + + R
Sbjct: 392 QHKVDTLRRCVHALDAQSVIAFMNH---SRQLKDVVYKLEARG--MNSAEMHGDLGKLGR 446
Query: 323 LASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
+ F K +V + ++RG+D AE + V+ + P D Y
Sbjct: 447 STVLKKFKNGEIK----VLVTNELSARGLDVAECDLVVNLELPTDAVHY 491
>AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 |
chr1:5568482-5570487 REVERSE LENGTH=491
Length = 491
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 172/367 (46%), Gaps = 34/367 (9%)
Query: 9 PDNNFFSVKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKT 68
P ++ S +F+ +G ++ +++ + +P+ VQ ++AG+ + Q+GSGKT
Sbjct: 50 PSSDTTSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKT 109
Query: 69 LAYLAPIIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMV 128
A+ PI+ RL ++ +++ PT ELA Q+ + +++ S + + V
Sbjct: 110 AAFALPILHRLAEDPY---------GVFALVVTPTRELAFQLAEQFKALG-SCLNLRCSV 159
Query: 129 VTGGFRQRTQLESLQQGVDVLIATPGRFLFLIKEG---FLQLTNLRCAVLDEVDILLGDE 185
+ GG TQ SL ++I TPGR L++ + + VLDE D +L D
Sbjct: 160 IVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVL-DV 218
Query: 186 DFEGALQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMG-PGMHRISSRLEEV 244
F+ L+ + Q L +AT+ N+ + L G+ + + ++
Sbjct: 219 GFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQF 278
Query: 245 LVDCSGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKK 304
+ + +D +E +L +L +E+ + ++F + TC+++ L+ ++
Sbjct: 279 IFE--DKDAKE-----LYL---VHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELE-- 326
Query: 305 GTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDF 364
++ + H+ +Q RL++ F S +V ++ TD ASRG+D V+ VI +D
Sbjct: 327 ---VENIAMHSLNSQSMRLSALSKFK---SGKVP-ILLATDVASRGLDIPTVDLVINYDI 379
Query: 365 PRDPSEY 371
PRDP +Y
Sbjct: 380 PRDPRDY 386
>AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA
helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
Length = 616
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 178/416 (42%), Gaps = 59/416 (14%)
Query: 18 SFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQ 77
+ ++G S ++++L ++ + +Q P + G+ + ++G+GKTLA+ PII
Sbjct: 105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 164
Query: 78 RL-KQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQR 136
++ K GR ++ P ++LAPT ELA QV R + S ++ + GG
Sbjct: 165 KIIKYNAKHGRGRN----PLCLVLAPTRELARQVEKEFRESAPS---LDTICLYGGTPIG 217
Query: 137 TQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLG---DEDFEGALQC 193
Q+ L GVDV + TPGR + L+K G L L+ ++ VLDE D +L ED E L+
Sbjct: 218 QQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEK 277
Query: 194 LINSSLVDTQYLFVTATLPKNVYS---------RLVEVFPDCEMIMGPGMHRISSRLEEV 244
L Q + +AT+P + S V++ D + + G+ S +
Sbjct: 278 LPEKR----QSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYS-----I 328
Query: 245 LVDCSGEDGQEKTPDTAFLNKKAALLQ--LVEESPVPRTIVFCNRIETCRKVENALNRID 302
+ D G +A+++ + E + + IVF ++ AL R
Sbjct: 329 IADSYG---------------RASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALAR-- 371
Query: 303 KKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILF 362
+ H ++Q R + GF +V TD A+RG+D V+ +I +
Sbjct: 372 ----SFKCEALHGDISQSQRERTLAGFRDGH----FNILVATDVAARGLDVPNVDLIIHY 423
Query: 363 DFPRDPSEYXXXXXXXXXXXXXXXKAFIFVVGKQVSLARKIMERNRKGHPLHDVPS 418
+ P + + + I + + S A KI+ER G ++PS
Sbjct: 424 ELPNNTETF--VHRTGRTGRAGKKGSAILIYSQDQSRAVKIIERE-VGSRFTELPS 476
>AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:1612077-1615195
FORWARD LENGTH=593
Length = 593
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 173/369 (46%), Gaps = 52/369 (14%)
Query: 25 SDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQRLKQEEL 84
S ++I++L F + VQA + + K + +GSGKTLA++ P+++ L+
Sbjct: 24 SGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILR---- 79
Query: 85 EGRSKSSSQAPRVV---ILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQLES 141
RS S P V I++PT EL++Q+ + + + S+++ GG + ++
Sbjct: 80 --RSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKI 137
Query: 142 LQQ-GVDVLIATPGRFLFLIKE-GFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINSSL 199
+++ G +VLI TPGR +++ L NL +LDE D LL E Q +N
Sbjct: 138 IEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLL-----EMGFQRQVN--- 189
Query: 200 VDTQYLFVTATLPKNVYSRLVEVF--PDCEMIMGPGMHRISSRLEEVLVDCSGEDGQE-- 255
++ + LPK + L E + G+ R R+E V E Q+
Sbjct: 190 ------YIISRLPKQRRTGLFSATQTEGVEELAKAGL-RNPVRVE-VRAKSKSESSQQLT 241
Query: 256 --KTPDTAFL--------NKKAALLQLVEESPVPRTIVFCNRIETCRKVEN---ALNRID 302
KTP L K + L+ L+ ++ + IVF TC V+ L++I
Sbjct: 242 NSKTPSGLHLEYMECEADKKSSQLVDLLIKNSDKKLIVF---FMTCASVDYWGLVLSKIP 298
Query: 303 KKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILF 362
+ I ++P H M Q +R + FT++ S ++CTD A+RG+D +++V+ +
Sbjct: 299 ALKS-ISLIPIHGDMKQNARDKALASFTKASSGA----LLCTDVAARGLDIPGIDYVVQY 353
Query: 363 DFPRDPSEY 371
D P+DP+ +
Sbjct: 354 DPPQDPNMF 362
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594128 REVERSE
LENGTH=412
Length = 412
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 163/363 (44%), Gaps = 47/363 (12%)
Query: 17 KSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPII 76
+SF +G +N+++ + F +PS +Q P G + QSG+GKT + + ++
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 98
Query: 77 QRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKS-GVPFKSMVVTGGFRQ 135
Q+L ++ ++ ++LAPT ELA Q+ R++ GV + V GG
Sbjct: 99 QQLDFSLIQCQA---------LVLAPTRELAQQIEKVMRALGDYLGVKVHACV--GGTSV 147
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLI 195
R LQ GV V++ TPGR ++K L+ N++ VLDE D +L F+ + +
Sbjct: 148 REDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLS-RGFKDQIYDIF 206
Query: 196 NSSLVDTQYLFVTATLP-------KNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDC 248
Q +AT+P + S+ V + + + G +++ V+
Sbjct: 207 QLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEG-------IKQFYVNV 259
Query: 249 SGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRI 308
E+ + +T L L E + ++++F N T RKV+ +++ + +
Sbjct: 260 EKEEWKLET-----------LCDLYETLAITQSVIFVN---TRRKVDWLTDKMRSRDHTV 305
Query: 309 QVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDP 368
H M Q +R F RS S S+ ++ TD +RGID +V+ VI FD P P
Sbjct: 306 SAT--HGDMDQNTRDIIMREF-RSGS---SRVLITTDLLARGIDVQQVSLVINFDLPTQP 359
Query: 369 SEY 371
Y
Sbjct: 360 ENY 362
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594094 REVERSE
LENGTH=402
Length = 402
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 163/363 (44%), Gaps = 47/363 (12%)
Query: 17 KSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPII 76
+SF +G +N+++ + F +PS +Q P G + QSG+GKT + + ++
Sbjct: 29 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 88
Query: 77 QRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKS-GVPFKSMVVTGGFRQ 135
Q+L ++ ++ ++LAPT ELA Q+ R++ GV + V GG
Sbjct: 89 QQLDFSLIQCQA---------LVLAPTRELAQQIEKVMRALGDYLGVKVHACV--GGTSV 137
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLI 195
R LQ GV V++ TPGR ++K L+ N++ VLDE D +L F+ + +
Sbjct: 138 REDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLS-RGFKDQIYDIF 196
Query: 196 NSSLVDTQYLFVTATLP-------KNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDC 248
Q +AT+P + S+ V + + + G +++ V+
Sbjct: 197 QLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEG-------IKQFYVNV 249
Query: 249 SGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRI 308
E+ + +T L L E + ++++F N T RKV+ +++ + +
Sbjct: 250 EKEEWKLET-----------LCDLYETLAITQSVIFVN---TRRKVDWLTDKMRSRDHTV 295
Query: 309 QVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDP 368
H M Q +R F RS S S+ ++ TD +RGID +V+ VI FD P P
Sbjct: 296 SAT--HGDMDQNTRDIIMREF-RSGS---SRVLITTDLLARGIDVQQVSLVINFDLPTQP 349
Query: 369 SEY 371
Y
Sbjct: 350 ENY 352
>AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887382-7889806 FORWARD LENGTH=610
Length = 610
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 165/368 (44%), Gaps = 54/368 (14%)
Query: 18 SFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQ 77
+ D+G S ++++L+ + + +Q P + G+ + ++G+GKTLA+ PII
Sbjct: 117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 176
Query: 78 RL-KQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQR 136
++ K GR K+ P+ ++LAPT ELA QV R + S ++ + GG
Sbjct: 177 KIIKFNAKHGRGKN----PQCLVLAPTRELARQVEKEFRESAPS---LDTICLYGGTPIG 229
Query: 137 TQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLG---DEDFEGALQC 193
Q+ L G+DV + TPGR + L+K G L L+ ++ VLDE D +L ED E LQ
Sbjct: 230 QQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQK 289
Query: 194 LINSSLVDTQYLFVTATLPKNVYS---------RLVEVFPDCEMIMGPGMHRISSRLEEV 244
L Q + +AT+P + S +++ D + + G+ S +
Sbjct: 290 L----PAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYS-----I 340
Query: 245 LVDCSGEDGQEKTPDTAFLNKKAALLQLVEE-SPVPRTIVFCNRIETCRKVENALNRIDK 303
D G + + + LV+E + IVF ++ L
Sbjct: 341 AADSYG--------------RASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGL----A 382
Query: 304 KGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFD 363
K + + L H ++Q R + GF R + + +V TD A+RG+D V+ VI ++
Sbjct: 383 KSYKCEAL--HGDISQAQRERTLAGF-RDGNFSI---LVATDVAARGLDVPNVDLVIHYE 436
Query: 364 FPRDPSEY 371
P + +
Sbjct: 437 LPNNTETF 444
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592586-4594128 REVERSE
LENGTH=415
Length = 415
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 163/363 (44%), Gaps = 47/363 (12%)
Query: 17 KSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPII 76
+SF +G +N+++ + F +PS +Q P G + QSG+GKT + + ++
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 98
Query: 77 QRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKS-GVPFKSMVVTGGFRQ 135
Q+L ++ ++ ++LAPT ELA Q+ R++ GV + V GG
Sbjct: 99 QQLDFSLIQCQA---------LVLAPTRELAQQIEKVMRALGDYLGVKVHACV--GGTSV 147
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLI 195
R LQ GV V++ TPGR ++K L+ N++ VLDE D +L F+ + +
Sbjct: 148 REDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLS-RGFKDQIYDIF 206
Query: 196 NSSLVDTQYLFVTATLP-------KNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDC 248
Q +AT+P + S+ V + + + G +++ V+
Sbjct: 207 QLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEG-------IKQFYVNV 259
Query: 249 SGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRI 308
E+ + +T L L E + ++++F N T RKV+ +++ + +
Sbjct: 260 EKEEWKLET-----------LCDLYETLAITQSVIFVN---TRRKVDWLTDKMRSRDHTV 305
Query: 309 QVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDP 368
H M Q +R F RS S S+ ++ TD +RGID +V+ VI FD P P
Sbjct: 306 SAT--HGDMDQNTRDIIMREF-RSGS---SRVLITTDLLARGIDVQQVSLVINFDLPTQP 359
Query: 369 SEY 371
Y
Sbjct: 360 ENY 362
>AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26897235-26899381 REVERSE LENGTH=558
Length = 558
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 159/358 (44%), Gaps = 45/358 (12%)
Query: 25 SDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQRLKQEEL 84
S+++I++L F + VQA + + K V+ +GSGKTLA+L P I+ ++
Sbjct: 24 SEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIR---- 79
Query: 85 EGRSKSSSQAPRV---VILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQLES 141
RS S P VI++PT EL++Q+ + S+++ GG + +
Sbjct: 80 --RSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNT 137
Query: 142 L-QQGVDVLIATPGRFLFLIKE-GFLQLTNLRCAVLDEVDILLGDEDFEGALQCLIN--- 196
L ++G ++LI TPGR ++K FL NL +LDE D LL D F+ + +I+
Sbjct: 138 LEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLL-DMGFQKQVNYIISRLP 196
Query: 197 ----SSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGED 252
+ L A L K +EV E + SS L + C +
Sbjct: 197 KQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAE-----SKSKTSSGLYCEYLKCEAD- 250
Query: 253 GQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGT--RIQV 310
K + L+ L+ E+ + +VF TC V+ + K T I
Sbjct: 251 -----------QKSSQLVHLLIENKNKKLVVF---FMTCACVDYWGLVLSKIPTLKSISF 296
Query: 311 LPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDP 368
H M Q+ R + FT + S ++CTD A+RG+D +++V+ +D P+DP
Sbjct: 297 FSTHGKMDQKGRDTALASFTEASSG----VLLCTDVAARGLDIPGIDYVVQYDPPQDP 350
>AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=412
Length = 412
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 162/363 (44%), Gaps = 47/363 (12%)
Query: 17 KSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPII 76
+SF +G +N+++ + F +PS +Q P G + QSG+GKT + + ++
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 98
Query: 77 QRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSK-SGVPFKSMVVTGGFRQ 135
Q+L L+ ++ ++LAPT ELA Q+ R++ GV + V GG
Sbjct: 99 QQLDYALLQCQA---------LVLAPTRELAQQIEKVMRALGDYQGVKVHACV--GGTSV 147
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLI 195
R LQ GV V++ TPGR +++ L+ ++ VLDE D +L F+ + +
Sbjct: 148 REDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLS-RGFKDQIYDIF 206
Query: 196 NSSLVDTQYLFVTATLP-------KNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDC 248
Q +AT+P + S+ V + + + G +++ V+
Sbjct: 207 QLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEG-------IKQFYVNV 259
Query: 249 SGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRI 308
ED + +T L L E + ++++F N T RKV+ +++ + +
Sbjct: 260 EKEDWKLET-----------LCDLYETLAITQSVIFVN---TRRKVDWLTDKMRSRDHTV 305
Query: 309 QVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDP 368
H M Q +R F RS S S+ ++ TD +RGID +V+ VI FD P P
Sbjct: 306 SAT--HGDMDQNTRDIIMREF-RSGS---SRVLITTDLLARGIDVQQVSLVINFDLPTQP 359
Query: 369 SEY 371
Y
Sbjct: 360 ENY 362
>AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:3576483-3580396 FORWARD LENGTH=845
Length = 845
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 96/376 (25%), Positives = 170/376 (45%), Gaps = 37/376 (9%)
Query: 9 PDNNFFSVKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKT 68
P ++ +S K F + S +++L + + VQ + GK ++ ++G+GK+
Sbjct: 367 PHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKS 426
Query: 69 LAYLAPIIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMV 128
+A+L P I+ + + G+ V+IL PT ELASQ+ +++ K+
Sbjct: 427 MAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQT 486
Query: 129 VTGGFRQRTQLESLQ-QGVDVLIATPGRFLFLI--KEGFL-QLTNLRCAVLDEVDILLGD 184
+ GG R R + L+ + +LIATPGR L I K G +L L+ ++DE D+LL D
Sbjct: 487 LIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLL-D 545
Query: 185 EDFEGALQCLINSSLVDTQYLFVTATLPKNV--YSRLVEVFPDCEMIMGPGMHRISSRLE 242
F+ ++ +I+ Q L +AT+PK V S+LV + R S ++
Sbjct: 546 LGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLV-------------LKRDHSYID 592
Query: 243 EVLVDCSGEDGQEK-----TPDTAFLNKKAALL-QLVEESPVPRTIVFCNRIETCRKVEN 296
+ + C + K P + + LL + + P + IVFC+ +
Sbjct: 593 TIGLGCVETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYT 652
Query: 297 ALNRIDKKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQF-MVCTDRASRGIDFAE 355
L + ++ V HA Q R + F KE ++ +V +D ++RG+++ +
Sbjct: 653 LLREM-----KLNVREIHARKPQLHRTCVSDEF-----KESNRLILVTSDVSARGMNYPD 702
Query: 356 VNHVILFDFPRDPSEY 371
V VI P D +Y
Sbjct: 703 VTLVIQVGIPSDREQY 718
>AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:22298668-22301719 REVERSE LENGTH=739
Length = 739
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 166/366 (45%), Gaps = 33/366 (9%)
Query: 11 NNFFSVKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLA 70
+ + V+ F + SD + L++ + + VQ+ A + G+ + + ++GSGKTLA
Sbjct: 65 SRYAGVRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLA 124
Query: 71 YLAPIIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVT 130
++ PI+++L +E S +I++PT ELA+Q + K F + ++
Sbjct: 125 FVIPILEKLHRERW-----SPEDGVGCIIISPTRELAAQTFGVLNKVGKFH-KFSAGLLI 178
Query: 131 GGFRQRTQLESLQ-QGVDVLIATPGRFLFLIKEG-FLQLTNLRCAVLDEVDILLGDEDFE 188
GG R+ +E + +++L+ PGR L + E + L+ +LDE D +L D F+
Sbjct: 179 GG-REGVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVL-DSAFK 236
Query: 189 GALQCLINSSLVDTQYLFVTATLPKNV--YSRLVEVFPDCEMIMGPGMHRISSRLEEVLV 246
G L +I+ Q L +AT K V +RL P+ + + + L + ++
Sbjct: 237 GQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVM 296
Query: 247 DCSGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGT 306
E K L ++ R +VF + + + V A N++ + G
Sbjct: 297 IVPVE------------KKLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKL-RPGI 343
Query: 307 RIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAE-VNHVILFDFP 365
++ L H M+QE R+ F E + CTD +RG+DF + V+ V+ D P
Sbjct: 344 PLKSL--HGKMSQEKRMGVYSQFI-----ERQSVLFCTDVLARGLDFDKAVDWVVQVDCP 396
Query: 366 RDPSEY 371
D + Y
Sbjct: 397 EDVASY 402
>AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiation
factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407
Length = 407
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 162/363 (44%), Gaps = 52/363 (14%)
Query: 17 KSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPII 76
+SF +G +N+++ F +PS +Q P G + QSG+GKT + + ++
Sbjct: 39 ESFDAMGLQENLLRG-----FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 93
Query: 77 QRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKS-GVPFKSMVVTGGFRQ 135
Q+L ++ ++ ++LAPT ELA Q+ R++ GV + V GG
Sbjct: 94 QQLDFSLIQCQA---------LVLAPTRELAQQIEKVMRALGDYLGVKVHACV--GGTSV 142
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLI 195
R LQ GV V++ TPGR ++K L+ N++ VLDE D +L F+ + +
Sbjct: 143 REDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLS-RGFKDQIYDIF 201
Query: 196 NSSLVDTQYLFVTATLP-------KNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDC 248
Q +AT+P + S+ V + + + G +++ V+
Sbjct: 202 QLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEG-------IKQFYVNV 254
Query: 249 SGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRI 308
E+ + +T L L E + ++++F N T RKV+ +++ + +
Sbjct: 255 EKEEWKLET-----------LCDLYETLAITQSVIFVN---TRRKVDWLTDKMRSRDHTV 300
Query: 309 QVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDP 368
H M Q +R F RS S S+ ++ TD +RGID +V+ VI FD P P
Sbjct: 301 SAT--HGDMDQNTRDIIMREF-RSGS---SRVLITTDLLARGIDVQQVSLVINFDLPTQP 354
Query: 369 SEY 371
Y
Sbjct: 355 ENY 357
>AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:9362176-9366449 REVERSE LENGTH=789
Length = 789
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 164/368 (44%), Gaps = 31/368 (8%)
Query: 7 SMPDNNFFSVKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSG 66
S D F +F ++ S ++++ + + +P+ +QA + G+ S +GSG
Sbjct: 157 STVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSG 216
Query: 67 KTLAYLAPIIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKS 126
KT A+ P ++RL R K A RV+IL PT ELA Q+ +++++ K
Sbjct: 217 KTAAFALPTLERLL-----FRPKRVF-ATRVLILTPTRELAVQIHSMIQNLAQF-TDIKC 269
Query: 127 MVVTGGFRQRTQLESLQQGVDVLIATPGRFLFLIKEGF-LQLTNLRCAVLDEVDILLGDE 185
++ GG R Q L+ D+++ATPGR + ++ + L +L +LDE D LL
Sbjct: 270 GLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-QT 328
Query: 186 DFEGALQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMG--PGMHRISSRLEE 243
F + L+ Q + +AT+ + V LV++ + + + P R EE
Sbjct: 329 GFATEITELVRLCPKRRQTMLFSATMTEEV-KELVKLSLNKPLRLSADPSARRPPGLTEE 387
Query: 244 VLVDCSGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDK 303
V+ + T N++A LL L + + I+F + +++
Sbjct: 388 VV----------RIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGL 437
Query: 304 KGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFD 363
K + H +TQ RL S E F K+ F++ TD A+RG+D V VI +
Sbjct: 438 KAAEL-----HGNLTQAQRLDSLELF----RKQEVDFLIATDVAARGLDIIGVQTVINYA 488
Query: 364 FPRDPSEY 371
PR+ Y
Sbjct: 489 CPREIDSY 496
>AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) |
chr5:24980542-24983879 REVERSE LENGTH=671
Length = 671
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 158/341 (46%), Gaps = 44/341 (12%)
Query: 43 VQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQRLKQEELEGRSK-SSSQAPRVVILA 101
+QA F V+ G V ++G GKTLA++ PI++ L + + K ++P V++L
Sbjct: 122 IQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLL 181
Query: 102 PTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQLESLQQGVDVLIATPGRFLFLIK 161
PT ELA QV + + S + S + GG Q L++GVD+++ TPGR I+
Sbjct: 182 PTRELAKQVAADFDAYGGS-LGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIE 240
Query: 162 EGFLQLTNLRCAVLDEVDILLGD---EDFEGALQCLINSSLVDTQYLFVTATLP---KNV 215
L + L+ VLDE D +L ED E L + +S+ V T L +ATLP KN+
Sbjct: 241 RQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQT--LLFSATLPSWVKNI 298
Query: 216 YSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKTPDTAFLNKKAALLQLVEE 275
+R ++ ++G + S+ + + + C+ KAA+ +L+ +
Sbjct: 299 SNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCN----------------KAAMARLIPD 342
Query: 276 -----SPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHAAMTQESRLASREGFT 330
S +TI+F ET +V +D G+R H + Q R + GF
Sbjct: 343 IISCYSSGGQTIIFA---ETKVQVSELSGLLD--GSR----ALHGEIPQSQREVTLAGFR 393
Query: 331 RSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
+V T+ A+RG+D +V +I + PR+ Y
Sbjct: 394 NGKFAT----LVATNVAARGLDINDVQLIIQCEPPREVEAY 430
>AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=407
Length = 407
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 161/363 (44%), Gaps = 52/363 (14%)
Query: 17 KSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPII 76
+SF +G +N+++ F +PS +Q P G + QSG+GKT + + ++
Sbjct: 39 ESFDAMGLQENLLRG-----FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 93
Query: 77 QRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSK-SGVPFKSMVVTGGFRQ 135
Q+L L+ ++ ++LAPT ELA Q+ R++ GV + V GG
Sbjct: 94 QQLDYALLQCQA---------LVLAPTRELAQQIEKVMRALGDYQGVKVHACV--GGTSV 142
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLI 195
R LQ GV V++ TPGR +++ L+ ++ VLDE D +L F+ + +
Sbjct: 143 REDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLS-RGFKDQIYDIF 201
Query: 196 NSSLVDTQYLFVTATLP-------KNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDC 248
Q +AT+P + S+ V + + + G +++ V+
Sbjct: 202 QLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEG-------IKQFYVNV 254
Query: 249 SGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRI 308
ED + +T L L E + ++++F N T RKV+ +++ + +
Sbjct: 255 EKEDWKLET-----------LCDLYETLAITQSVIFVN---TRRKVDWLTDKMRSRDHTV 300
Query: 309 QVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDP 368
H M Q +R F RS S S+ ++ TD +RGID +V+ VI FD P P
Sbjct: 301 SAT--HGDMDQNTRDIIMREF-RSGS---SRVLITTDLLARGIDVQQVSLVINFDLPTQP 354
Query: 369 SEY 371
Y
Sbjct: 355 ENY 357
>AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2949152-2952205
REVERSE LENGTH=989
Length = 989
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 111/204 (54%), Gaps = 11/204 (5%)
Query: 16 VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPI 75
++ + G + ++ +L+ ++ +P +QA A +++G+ C+ ++GSGKTL ++ P+
Sbjct: 395 IQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPM 454
Query: 76 IQRLK-QEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFR 134
++ +K Q +E + P +++APT EL Q+ + R SK+ + + V GG
Sbjct: 455 LRHIKDQPPVE-----AGDGPIGLVMAPTRELVQQIYSDIRKFSKA-LGIICVPVYGGSG 508
Query: 135 QRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLR---CAVLDEVDILLGDEDFEGAL 191
Q+ L++G ++++ TPGR + ++ ++TNLR V+DE D + D FE +
Sbjct: 509 VAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMF-DMGFEPQI 567
Query: 192 QCLINSSLVDTQYLFVTATLPKNV 215
++ + D Q + +AT P+ V
Sbjct: 568 TRIVQNIRPDRQTVLFSATFPRQV 591
>AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:23463284-23466451 REVERSE LENGTH=798
Length = 798
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 174/378 (46%), Gaps = 41/378 (10%)
Query: 9 PDNNFFSVKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKT 68
P ++ +S K F + S +++L + + VQ + GK ++ ++G+GK+
Sbjct: 320 PHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKS 379
Query: 69 LAYLAPIIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSK--SGVPFKS 126
+A+L P I+ + + G+ + +IL PT ELASQ+ +++ K G+ ++
Sbjct: 380 MAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQT 439
Query: 127 MVVTGGFRQRTQLESLQ-QGVDVLIATPGRFLFLI--KEGFL-QLTNLRCAVLDEVDILL 182
++ GG R + + L+ + +LIATPGR L I K G +L L+ ++DE D+LL
Sbjct: 440 LI--GGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLL 497
Query: 183 GDEDFEGALQCLINSSLVDTQYLFVTATLPKNV--YSRLVEVFPDCEMIMGPGMHRISSR 240
D F ++ +I+ Q L +AT+PK V S+LV + R S
Sbjct: 498 -DLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLV-------------LKRDHSY 543
Query: 241 LEEVLVDCSGEDGQEK-----TPDTAFLNKKAALL-QLVEESPVPRTIVFCNRIETCRKV 294
++ + + C + + P + + LL + + +P + IVFC+ +
Sbjct: 544 IDTIGLGCVETHDKVRQSCIVAPHESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLM 603
Query: 295 ENALNRIDKKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQF-MVCTDRASRGIDF 353
L + ++ V HA Q R + F KE ++ +V +D ++RG+++
Sbjct: 604 YTLLREM-----KLNVREIHARKPQLHRTRVSDEF-----KESNRLILVTSDVSARGMNY 653
Query: 354 AEVNHVILFDFPRDPSEY 371
+V VI P D +Y
Sbjct: 654 PDVTLVIQVGIPSDREQY 671
>AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6461444-6463687
FORWARD LENGTH=472
Length = 472
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 164/373 (43%), Gaps = 59/373 (15%)
Query: 26 DNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQRLKQEELE 85
++++ ++ F P+ +Q A + G+ C++ Q+GSGKTL YL I + +
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ--- 141
Query: 86 GRSKSSSQAPRVVILAPTAELASQVLDNCRSM-SKSGVPFKSMVVT----GGFRQRTQLE 140
+SS QA VI+ PT EL QV R + +KS + K V GG +R +
Sbjct: 142 ---RSSVQA---VIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSW 195
Query: 141 SLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLIN--SS 198
+ +L+AT ++++ ++ ++R V+DEVD L G+++ L+ SS
Sbjct: 196 LKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSS 255
Query: 199 LVDTQYLFVTATLPKN---VYSRLVEVFP--DCEMIMGPGMHRISSRLEEVLVDCSGEDG 253
Q +F +A++P++ V+ + + + D + + + L V C
Sbjct: 256 CDKRQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMC----- 310
Query: 254 QEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALN-----------RID 302
EKT NK LL L+E I+F E K + A N +
Sbjct: 311 -EKT------NKHQVLLALLESDAPESAIIFVG--EQSEKSKKAGNDPSTTLLMEFLKTS 361
Query: 303 KKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQ----FMVCTDRASRGIDFAEVNH 358
KG+ +++L M SR AS E+ Q +V TD A+RGID E H
Sbjct: 362 YKGS-LEILLLEGDMNFNSRAASL--------TEIRQGGGFLLVSTDIAARGIDLPETTH 412
Query: 359 VILFDFPRDPSEY 371
+ FD P+ ++Y
Sbjct: 413 IFNFDLPQTVTDY 425
>AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790341-2794059
FORWARD LENGTH=850
Length = 850
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 94/377 (24%), Positives = 172/377 (45%), Gaps = 44/377 (11%)
Query: 11 NNFFSVKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLA 70
+++ S F S ++++++ F + VQ ++ GK + ++G+GKT+A
Sbjct: 376 DSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVA 435
Query: 71 YLAPIIQRLKQEELEGRSKSSSQAPRVV-ILAPTAELASQVLDNCRSMSKSGVPFKSMVV 129
+L P I+ + + S+ S Q P +V ++ PT ELASQ ++ K VV
Sbjct: 436 FLLPAIEAVIKSPPA--SRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVV 493
Query: 130 TGGFRQRTQLESLQQG-VDVLIATPGRFLFLIKE--GF-LQLTNLRCAVLDEVDILLGDE 185
GG + T+ +Q +L+ATPGR I+ GF +L ++ VLDE D LL D
Sbjct: 494 IGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLL-DM 552
Query: 186 DFEGALQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVL 245
F ++ +I + Q +AT+P+ EV C + + + +
Sbjct: 553 GFRRDIERIIAAVPKQRQTFLFSATVPE-------EVRQICHVAL---------KRDHEF 596
Query: 246 VDC----SGEDGQEKTP--DTAFLNKKAALLQLVEESPVP-----RTIVFCNRIETCRKV 294
++C SGE Q+ T A L++ +LL ++ + + + I+FC R V
Sbjct: 597 INCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLV 656
Query: 295 ENALNRIDKKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFA 354
+ L+++ + V H+ Q R + F +S + +V +D ++RG+D+
Sbjct: 657 ADLLSQLS-----LNVREIHSRKPQSYRTRVSDEFRKSK----AIILVTSDVSARGVDYP 707
Query: 355 EVNHVILFDFPRDPSEY 371
+V+ V+ P D +Y
Sbjct: 708 DVSLVVQMGLPSDREQY 724
>AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:27378040-27379593 REVERSE LENGTH=414
Length = 414
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 153/354 (43%), Gaps = 31/354 (8%)
Query: 18 SFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQ 77
SF + ++++ + F +PS +Q P G + QSG+GKT + + ++Q
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQ 101
Query: 78 RLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRT 137
+L ++ ++ ++LAPT ELA Q+ R++ + K+ GG R
Sbjct: 102 QLDISLVQCQA---------LVLAPTRELAQQIEKVMRALGDY-LGVKAQACVGGTSVRE 151
Query: 138 QLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINS 197
LQ GV V++ TPGR L++ L+ ++ VLDE D +L F+ + +
Sbjct: 152 DQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLS-RGFKDQIYDIFQL 210
Query: 198 SLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKT 257
Q +AT+P + I+ +++ V+ E+ + +T
Sbjct: 211 LPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLET 270
Query: 258 PDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHAAM 317
L L E + ++++F N T RKV+ +++ + + H M
Sbjct: 271 -----------LCDLYETLAITQSVIFVN---TRRKVDWLTDKMRSRDHTVSAT--HGDM 314
Query: 318 TQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
Q +R F RS S S+ ++ TD +RGID +V+ VI FD P P Y
Sbjct: 315 DQNTRDIIMREF-RSGS---SRVLITTDLLARGIDVQQVSLVINFDLPTQPENY 364
>AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3553334-3556646 FORWARD LENGTH=427
Length = 427
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 143/358 (39%), Gaps = 38/358 (10%)
Query: 19 FKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQR 78
F+D +++++ + F PS VQ I G + +SG GKT ++ +Q+
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 79 LKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQ 138
++ S ++L T ELA Q+ + S K V GG +
Sbjct: 108 IE---------PSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIH 158
Query: 139 LESLQQGV-DVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINS 197
+ L+ +++ TPGR L L +E L L N+R +LDE D +L D +Q +
Sbjct: 159 KDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 218
Query: 198 SLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGE----DG 253
+ D Q + +ATL K E+ P C+ M M E+ VD +
Sbjct: 219 TPHDKQVMMFSATLSK-------EIRPVCKKFMQDPM--------EIYVDDEAKLTLHGL 263
Query: 254 QEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPF 313
+ + + K L L++ + ++F + ++ L + +
Sbjct: 264 VQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN-----FPSICI 318
Query: 314 HAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
H+ M+QE RL + F + +V TD RGID VN VI +D P Y
Sbjct: 319 HSGMSQEERLTRYKSFKEGHKR----ILVATDLVGRGIDIERVNIVINYDMPDSADTY 372
>AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=427
Length = 427
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 143/358 (39%), Gaps = 38/358 (10%)
Query: 19 FKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQR 78
F+D +++++ + F PS VQ I G + +SG GKT ++ +Q+
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 79 LKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQ 138
++ S ++L T ELA Q+ + S K V GG +
Sbjct: 108 IE---------PSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIH 158
Query: 139 LESLQQGV-DVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINS 197
+ L+ +++ TPGR L L +E L L N+R +LDE D +L D +Q +
Sbjct: 159 KDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 218
Query: 198 SLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGE----DG 253
+ D Q + +ATL K E+ P C+ M M E+ VD +
Sbjct: 219 TPHDKQVMMFSATLSK-------EIRPVCKKFMQDPM--------EIYVDDEAKLTLHGL 263
Query: 254 QEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPF 313
+ + + K L L++ + ++F + ++ L + +
Sbjct: 264 VQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN-----FPSICI 318
Query: 314 HAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
H+ M+QE RL + F + +V TD RGID VN VI +D P Y
Sbjct: 319 HSGMSQEERLTRYKSFKEGHKR----ILVATDLVGRGIDIERVNIVINYDMPDSADTY 372
>AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5738020-5743042
REVERSE LENGTH=826
Length = 826
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 157/396 (39%), Gaps = 62/396 (15%)
Query: 28 VIQSLQNQSFTRPSHVQAMAFG-PVIAGKTCVISDQSGSGKTLAYLAPIIQRLKQEE--- 83
+++S+ F P+ +Q F GK + + ++GSGKTLA+ PI+QRL E
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 260
Query: 84 -----LEGRSKSSSQAP---RVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQ 135
L+G A R +I+ PT ELA QV ++ + +K+ + K + + GG
Sbjct: 261 GKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKN-LSVKVVPIVGGMFS 319
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEG---FLQLTNLRCAVLDEVDILLGDEDFEGALQ 192
Q L++ ++++ATPGR L+ G ++L +L VLDE D ++ F
Sbjct: 320 EKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQS 379
Query: 193 CLINSSLVDTQYLFVTATLPKN--------------VYSRLVEVFPDCEMIMGPGM---- 234
L + D T T+ N V+S + + D + G
Sbjct: 380 ILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSK 439
Query: 235 --------------HRISSRLEEVLVDCSGEDGQEKTPDTAFLN-----KKAALLQLVEE 275
R R ++D + + +F+ K A L ++
Sbjct: 440 QSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSV 499
Query: 276 SPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHAAMTQESRLASREGFTRSPSK 335
RTIVFC + R + L + + V + M Q +RL S + F S
Sbjct: 500 HGQGRTIVFCTSVTDLRHISGLLKILG-----LDVCTLFSEMKQRARLKSIDRFRASE-- 552
Query: 336 EVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
+ ++ TD +RGID V +I + P Y
Sbjct: 553 --NGILIATDLVARGIDIKNVRTIIHYKLPHSAEVY 586
>AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843084-9845002
REVERSE LENGTH=614
Length = 614
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 151/328 (46%), Gaps = 58/328 (17%)
Query: 63 SGSGKTLAYLAPI---IQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSK 119
+GSGKT A++ P+ I RL R ++ ++ P +++ PT ELA Q+ + S+
Sbjct: 248 TGSGKTAAFVLPMLAYISRLPP----MREENQTEGPYALVMVPTRELAHQIEEETVKFSR 303
Query: 120 SGVPFKSMVVTGGFRQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVD 179
+ FK++ +TG Q L QG +++IATPGR L ++ ++ L VLDE D
Sbjct: 304 Y-LGFKAVSITGWESIEKQALKLSQGCEIVIATPGRLLDCLERRYVVLNQCNYLVLDEAD 362
Query: 180 ILLGDEDFEGALQCLIN------------------SSLVDTQYLFVTATLPKNVYSRLVE 221
++ D DFE + +++ + T Y+F +AT+ +V RL
Sbjct: 363 RMI-DMDFEPQVSEVLDVMPCSNLKPEKEDEELEEKKIYRTTYMF-SATMLLSV-ERLAR 419
Query: 222 VFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQ---EKTPDTAFLNKKAALLQLVEESPV 278
F L +V GE + ++ T +K + L +L+++
Sbjct: 420 KF-----------------LRNPVVVTIGETTKFITQQVIMTKESDKFSRLKKLIDDLGD 462
Query: 279 PRT-IVFCNRIETCRKVENALNRIDKKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEV 337
+T IVF N T KV+ + ++K G R +V HA +QE R S E F K+
Sbjct: 463 DKTAIVFVN---TRNKVDYIVKNLEKVG-RCRVTTLHAGKSQEQRDYSLEEF----KKKR 514
Query: 338 SQFMVCTDRASRGIDFAEVNHVILFDFP 365
+V TD RG+D ++ VI +D P
Sbjct: 515 FNVLVTTDVLGRGLDILDLAQVINYDMP 542
>AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=468
Length = 468
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 96/396 (24%), Positives = 149/396 (37%), Gaps = 71/396 (17%)
Query: 18 SFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQ 77
F+D +++++ + F PS VQ I G + +SG GKT ++ +Q
Sbjct: 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ 106
Query: 78 RLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRT 137
+++ S ++L T ELA Q+ + S K V GG +
Sbjct: 107 QIE---------PSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKI 157
Query: 138 QLESLQQGV-DVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLIN 196
+ L+ +++ TPGR L L +E L L N+R +LDE D +L D +Q +
Sbjct: 158 HKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 217
Query: 197 SSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISS----------------- 239
+ D Q + +ATL K E+ P C+ M G+ +S
Sbjct: 218 MTPHDKQVMMFSATLSK-------EIRPVCKKFMQDGLRTLSGDSVALWWVGFGSGYCVF 270
Query: 240 ----RLEEVLVDCSGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVE 295
R L S D E D K L LV+ + + +E RK+
Sbjct: 271 PRFHRARMGLNVPSNIDPMEIYVDD---EAKLTLHGLVQH------YIKLSEMEKNRKLN 321
Query: 296 NALNRIDKKGTRIQV--------------------LPFHAAMTQESRLASREGFTRSPSK 335
+ L+ +D I V + H+ M+QE RL + F +
Sbjct: 322 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKR 381
Query: 336 EVSQFMVCTDRASRGIDFAEVNHVILFDFPRDPSEY 371
+V TD RGID VN VI +D P Y
Sbjct: 382 ----ILVATDLVGRGIDIERVNIVINYDMPDSADTY 413
>AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:16976783-16979392
FORWARD LENGTH=609
Length = 609
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 11/186 (5%)
Query: 2 DNRKPSMPDNNFFSVKSFKDIGCSDNVIQSLQNQ-SFTRPSHVQAMAFGPVIAGKTCVIS 60
+ + S + F+ SF +G + L+ + F P+ VQA A +++G+ +++
Sbjct: 14 EAKDASKAKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVN 73
Query: 61 DQSGSGKTLAYLAPIIQRLKQEELEGRSKS--SSQAPRVVILAPTAELASQVLDNCRSMS 118
+G+GKT+AYLAP+I L+G S S +++ PT EL QV + +
Sbjct: 74 APTGTGKTIAYLAPLIHH-----LQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLL 128
Query: 119 KSGVPFKSMVVTGGFRQRTQLESLQQGVDVLIATPGRFLFLIKE--GFLQLTNLRCAVLD 176
V GG ++ + L++G+ +LIATPGR L +K F+ NLR + D
Sbjct: 129 HRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVH-KNLRWVIFD 187
Query: 177 EVDILL 182
E D +L
Sbjct: 188 EADSIL 193
>AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:16631661-16634834
FORWARD LENGTH=626
Length = 626
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/400 (23%), Positives = 170/400 (42%), Gaps = 70/400 (17%)
Query: 17 KSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPII 76
KSF+++G +I++L + +P+ +Q A ++ GK V ++GSGKTLAYL P++
Sbjct: 46 KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL 105
Query: 77 QRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSK-SGVPFKSMVVTGGFRQ 135
Q+L + + K AP IL P+ EL QV S+ + V K++ +T
Sbjct: 106 QKLFSADSVSKKK---LAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSA 162
Query: 136 RTQLESLQQGVDVLIATPGRFLFLIKEGFLQLT----NLRCAVLDEVDILLGDEDFEGAL 191
+L ++L++TP G L+ T +L VLDE D+LL +E L
Sbjct: 163 SDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLS-YGYEDNL 221
Query: 192 QCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIM-----GPGMHRISSRLEEVLV 246
+ + + Q L ++AT +V +L ++ +++ + S +++ +
Sbjct: 222 RSVTSIIPRRCQCLLMSATTSSDV-EKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWI 280
Query: 247 DCSGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGT 306
CS +D L++V++ + ++F N I+ +++ L + G
Sbjct: 281 SCSAQDKLLHI-------LALLKLEVVQK----KILIFINTIDMGFRLKLFLEKF---GI 326
Query: 307 RIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRAS------------------ 348
+ +L + + Q SRL E F + +++ TD S
Sbjct: 327 KSAIL--NGELPQNSRLHILEQFNAG----LFDYLIATDDNSQTKKQKEEAKGEANKENK 380
Query: 349 -----------------RGIDFAEVNHVILFDFPRDPSEY 371
RGIDF +V+ VI FD P+ + Y
Sbjct: 381 KNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGY 420
>AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794540-2797548 FORWARD LENGTH=563
Length = 563
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/378 (23%), Positives = 161/378 (42%), Gaps = 46/378 (12%)
Query: 11 NNFFSVKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLA 70
+++ S F S ++ +++ F + VQ ++ GK + ++G+GKT+A
Sbjct: 74 DSYLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVA 133
Query: 71 YLAPIIQRLKQEELEGRSKSSSQAPRVVILA--PTAELASQVLDNCRSMSKSGVPFKSMV 128
+L P I+ + + R ++ P +++L PT ELA Q + K V
Sbjct: 134 FLLPSIEAVIKAPPASRD---NRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQV 190
Query: 129 VTGGFRQRTQLESLQQG-VDVLIATPGRFLFLIKE--GF-LQLTNLRCAVLDEVDILLGD 184
V GG + T+ LQ+ +L+ATPGR I GF +L ++ VLDE D LL D
Sbjct: 191 VIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLL-D 249
Query: 185 EDFEGALQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEV 244
F ++ +I + Q +AT+ EV C + + + +
Sbjct: 250 MGFRREIERIIAAVPKQRQTFLFSATVSD-------EVRQICHVAL---------KRDHE 293
Query: 245 LVDCSGEDGQEKTPDT------AFLNKKAALL-----QLVEESPVPRTIVFCNRIETCRK 293
V+C E E A L++ +LL + + ++ + I+FC R
Sbjct: 294 FVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLKKHITDNVGYKVIIFCTTAMVTRL 353
Query: 294 VENALNRIDKKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDF 353
V + L ++ + V H+ Q R + F +S S +V +D ++RG+D+
Sbjct: 354 VADLLGKLS-----LNVREIHSRKPQSYRTRVSDEFRKSKS----IILVTSDVSARGVDY 404
Query: 354 AEVNHVILFDFPRDPSEY 371
+V+ V+ P D +Y
Sbjct: 405 PDVSLVVQMGLPSDREQY 422
>AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476402
REVERSE LENGTH=788
Length = 788
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/378 (23%), Positives = 167/378 (44%), Gaps = 44/378 (11%)
Query: 10 DNNFFSVKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTL 69
++++ + F S ++++++ + + VQ ++ GK + ++G+GKT+
Sbjct: 313 NDSYLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTV 372
Query: 70 AYLAPIIQRLKQEELEGRSKSSSQAPRV-VILAPTAELASQVLDNCRSMSKSGVPFKSMV 128
A+L P I+ + + S + + P + +++ PT ELA+Q ++ K V
Sbjct: 373 AFLLPSIEVVVKSP--PTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQV 430
Query: 129 VTGGFRQRTQLESLQQG-VDVLIATPGRFLFLIKE--GF-LQLTNLRCAVLDEVDILLGD 184
V GG R + + +Q +L+ATPGR I+ GF +L ++ VLDE D LL D
Sbjct: 431 VIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLL-D 489
Query: 185 EDFEGALQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEV 244
F ++ +I++ + Q +AT+P+ EV C + + R +
Sbjct: 490 MGFRKDIERIISAVPKERQTFLFSATVPE-------EVRQICLVAL---------RRDHE 533
Query: 245 LVDCSGEDGQEKTPDT------AFLNKKAALL-QLVEESPVP----RTIVFCNRIETCRK 293
V+C E E A L++ +LL L+ E + + IVFC +
Sbjct: 534 FVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYTLLREHIMGNVDYKVIVFCTTAMVTKL 593
Query: 294 VENALNRIDKKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDF 353
V + L ++ + V H+ Q R F +S +V +D ++RG+D+
Sbjct: 594 VADLLGELN-----LNVREIHSRKPQSYRTRVSNEFRKSKG----LILVTSDVSARGVDY 644
Query: 354 AEVNHVILFDFPRDPSEY 371
+V V+ P+D +Y
Sbjct: 645 PDVTLVLQVGLPKDREQY 662
>AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26870262-26872152 REVERSE LENGTH=465
Length = 465
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 148/342 (43%), Gaps = 59/342 (17%)
Query: 25 SDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQRLKQEEL 84
S+++I++L F + VQA + + K V+ +GSGKTLA+L P I+ ++
Sbjct: 25 SEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIR---- 80
Query: 85 EGRSKSSSQAPRV---VILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQLES 141
RS S P VI++PT EL++Q+ R++ + + + +
Sbjct: 81 --RSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREV--------EADMNT 130
Query: 142 L-QQGVDVLIATPGRFLFLIKE-GFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINSSL 199
L ++G ++LI TPGR ++K FL NL +LDE D LL D F+
Sbjct: 131 LEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLL-DMGFQ----------- 178
Query: 200 VDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKTPD 259
Q ++ + LPK R +F + + + + L + C +
Sbjct: 179 --KQVNYIISRLPKQ---RRTGLFSATQTQAVADLAK--AGLRNPYLKCEAD-------- 223
Query: 260 TAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGT--RIQVLPFHAAM 317
K + L+ L+ E+ + +VF TC V+ I K + I P H M
Sbjct: 224 ----QKSSQLVHLLIENKNKKLVVF---FMTCACVDYWGLVISKIPSLKSISFFPTHGKM 276
Query: 318 TQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHV 359
Q+ R + FT + S ++CTD A+RG+D + ++
Sbjct: 277 DQKGRDTALASFTEASSG----VLLCTDVAARGLDIPGIVYI 314
>AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:22090369-22092885 REVERSE LENGTH=581
Length = 581
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 24/202 (11%)
Query: 10 DNNFFS--VKSFKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGK 67
++ FF+ S+K +G SDNV +L++ F RPS QA+ +++GK +++ ++GSGK
Sbjct: 71 NDTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGK 130
Query: 68 TLAYLAPIIQRLKQEELEGRSKSSSQAP-----RVVILAPTAELASQVLDNCRSM-SKSG 121
T YLAPII +L L+ + + P +IL P L QV+ + + G
Sbjct: 131 THGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDG 190
Query: 122 VPF---KSMVVTGGFRQRTQLESLQQGVDVLIATPGRFLFLIK-EGFLQLTNLRC---AV 174
P +++ + G+ R D++++TP L I+ + +L LRC V
Sbjct: 191 NPLLRVEAVCGSQGWPDRLP--------DIIVSTPAALLNNIEPKRNRRLEFLRCVKYVV 242
Query: 175 LDEVDILLGDEDFEGALQCLIN 196
DE D+LL F+ + LIN
Sbjct: 243 FDEADMLLCGS-FQNQIIRLIN 263
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 203 QYLFVTATLP----KNVYSRLVEVFPDCEMIMGPGMHRISSRLEEVLVDCSGEDGQEKTP 258
QY+F+ ATLP K L +F D + G +HR S RL++ V E T
Sbjct: 354 QYIFIAATLPVNGKKTAGGILKHMFQDAVWVSGNFLHRNSPRLKQKWV--------EVTV 405
Query: 259 DTAFLNKKAALLQLVEESPV---PRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHA 315
D+ + AL++ V+ + RT+VF N +E V + L + IQ +H
Sbjct: 406 DS----QVDALIEAVKNNNNTNTERTMVFANTVEAVEAVADILEK-----ASIQCYRYHK 456
Query: 316 AMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDF 364
+ R F +E VCTD A+RG+D V+HVI DF
Sbjct: 457 NHKLDERANILADF-----RETGGVFVCTDAAARGVDVPNVSHVIQADF 500
>AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3554272-3556646 FORWARD LENGTH=344
Length = 344
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 126/315 (40%), Gaps = 38/315 (12%)
Query: 62 QSGSGKTLAYLAPIIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSG 121
+SG GKT ++ +Q+++ S ++L T ELA Q+ + S
Sbjct: 8 KSGMGKTAVFVLSTLQQIE---------PSPGQVSALVLCHTRELAYQICNEFVRFSTYL 58
Query: 122 VPFKSMVVTGGFRQRTQLESLQQGV-DVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDI 180
K V GG + + L+ +++ TPGR L L +E L L N+R +LDE D
Sbjct: 59 PDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDK 118
Query: 181 LLGDEDFEGALQCLINSSLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSR 240
+L D +Q + + D Q + +ATL K E+ P C+ M M
Sbjct: 119 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-------EIRPVCKKFMQDPM------ 165
Query: 241 LEEVLVD----CSGEDGQEKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVEN 296
E+ VD + + + + K L L++ + ++F + ++
Sbjct: 166 --EIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNK 223
Query: 297 ALNRIDKKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEV 356
L + I H+ M+QE RL + F + +V TD RGID V
Sbjct: 224 LLVECNFPSICI-----HSGMSQEERLTRYKSFKEGHKR----ILVATDLVGRGIDIERV 274
Query: 357 NHVILFDFPRDPSEY 371
N VI +D P Y
Sbjct: 275 NIVINYDMPDSADTY 289
>AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr3:19687968-19690423 FORWARD LENGTH=496
Length = 496
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 154/365 (42%), Gaps = 39/365 (10%)
Query: 10 DNNFFSVKSFKDIGCSDNVIQSLQ-NQSFTRPSHVQAMAFGPVIAG---KTCVISDQSGS 65
D + S F+D+ S +++ L F +PS +QA++ P+I K + +GS
Sbjct: 84 DTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISL-PMIMTPPHKHLIAQAHNGS 142
Query: 66 GKTLAYLAPIIQRLKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSK-SGVPF 124
GKT ++ ++ R+ + + P+ + + PT ELA+Q ++ + M K +G+
Sbjct: 143 GKTTCFVLGMLSRVD---------PTLREPQALCICPTRELANQNMEVLQKMGKFTGITA 193
Query: 125 KSMVVTGGFRQRTQLESLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGD 184
+ V V+I TPG + L L +L+ V DE D +L
Sbjct: 194 ELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLAT 253
Query: 185 EDF-EGALQCLINSSLVDT--QYLFVTATLPKNVYSRLVEVFPDCEMIMGPGMHRISSRL 241
+ F + +L+ + + V+ Q L +AT + V + D + +
Sbjct: 254 DGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDSV 313
Query: 242 EEVLVDCSGEDGQ-EKTPDTAFLNKKAALLQLVEESPVPRTIVFCNRIETCRKVENALNR 300
++ V C E + E D Q++E + +TI+F + +KV AL
Sbjct: 314 KQYKVVCPKEQNKIEVIKD-----------QIMELGDIGQTIIFVKTKASAQKVHKALAE 362
Query: 301 IDKKGTRIQVLPFHAAMTQESRLASREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVI 360
+ T + H +T+ + R+ + + ++Q ++ TD +RG D VN V+
Sbjct: 363 MGYDVTSV-----HGNLTE----SDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVV 413
Query: 361 LFDFP 365
++ P
Sbjct: 414 NYNLP 418
>AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=486
Length = 486
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 17/213 (7%)
Query: 19 FKDIGCSDNVIQSLQNQSFTRPSHVQAMAFGPVIAGKTCVISDQSGSGKTLAYLAPIIQR 78
F+D +++++ + F PS VQ I G + +SG GKT ++ +Q+
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 79 LKQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQ 138
++ S ++L T ELA Q+ + S K V GG +
Sbjct: 108 IE---------PSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIH 158
Query: 139 LESLQQGV-DVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILLGDEDFEGALQCLINS 197
+ L+ +++ TPGR L L +E L L N+R +LDE D +L D +Q +
Sbjct: 159 KDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 218
Query: 198 SLVDTQYLFVTATLPKNVYSRLVEVFPDCEMIM 230
+ D Q + +ATL K E+ P C+ M
Sbjct: 219 TPHDKQVMMFSATLSK-------EIRPVCKKFM 244
>AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 |
chr4:9001426-9004534 FORWARD LENGTH=522
Length = 522
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 94/401 (23%), Positives = 160/401 (39%), Gaps = 93/401 (23%)
Query: 30 QSLQNQSFTRPSHVQAMAF----GPVIAGKTCVISDQSGSGKTLAYLAPIIQRLKQEELE 85
++L+N + VQ + GP + ++ +GSGKTL+Y PI+Q L +
Sbjct: 44 KALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPV- 102
Query: 86 GRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKS-GVPFKSMV----VTGGFRQRTQL- 139
+ R +++ PT +LA QV D +++ + G+ S V + G Q +
Sbjct: 103 -------RCLRALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTP 155
Query: 140 --------------ESLQQGVDVLIATPGRFLFLIK--EGFLQLTNLRCAVLDEVDILLG 183
++L+ VD+L+ATPGR + I +GF L +LR V+DE D LL
Sbjct: 156 KLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGF-TLEHLRYLVVDETDRLL- 213
Query: 184 DEDFEGALQCLINSSLVDTQYLFVTAT---------------------LPKNVYSRLVEV 222
E ++ L ++ + LF + T Y RLV++
Sbjct: 214 REAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKM 273
Query: 223 FPDCE------------------MIMGPGMHRISSRLEEVLVDCSGEDGQEKTPDTAFLN 264
M G +R+ +LE + + C E G
Sbjct: 274 VLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLECLRLIC--ETGM---------- 321
Query: 265 KKAALLQLVEESPVPRTIVFCNRIETCRKVENALNRIDKKGTRIQVLPFHAAMTQESRLA 324
K L+ L++ + I+F + +ET R++ LN +I+ + + Q R
Sbjct: 322 KPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDP--KIKAKEYSGGLNQSLRSK 379
Query: 325 SREGFTRSPSKEVSQFMVCTDRASRGIDFAEVNHVILFDFP 365
+ F K Q +V +D +RG+D V +VI +D P
Sbjct: 380 ELKAF----RKGDIQVLVASDALTRGMDVKGVTNVINYDMP 416