Miyakogusa Predicted Gene

Lj1g3v3330210.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3330210.1 tr|G7J985|G7J985_MEDTR Cytoplasmic tRNA
2-thiolation protein OS=Medicago truncatula GN=MTR_3g118250
,87.93,0,ATP_bind_3,tRNA(Ile)-lysidine/2-thiocytidine synthase; no
description,Rossmann-like alpha/beta/alpha,CUFF.30464.1
         (349 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44270.1 | Symbols: ROL5 | repressor of lrx1 | chr2:18298078-...   595   e-170
AT2G44270.2 | Symbols: ROL5 | repressor of lrx1 | chr2:18298078-...   558   e-159
AT1G76170.1 | Symbols:  | 2-thiocytidine tRNA biosynthesis prote...   548   e-156

>AT2G44270.1 | Symbols: ROL5 | repressor of lrx1 |
           chr2:18298078-18300153 REVERSE LENGTH=355
          Length = 355

 Score =  595 bits (1534), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 289/355 (81%), Positives = 314/355 (88%), Gaps = 6/355 (1%)

Query: 1   MEGEGERKRRS-LCCVCNERRPSLKRPKTLEHICRECFYTVFEDEIHQVIVTNNLFRRGE 59
           ME + ++   S LCC+CN RRP LKRPKTL+ ICRECFY VFE+EIHQVIV N LF+ GE
Sbjct: 1   MEAKNKKAVASRLCCLCNLRRPVLKRPKTLQQICRECFYEVFEEEIHQVIVQNRLFKSGE 60

Query: 60  RVAIGASGGKDSTVLAYVLSKLNRVHDYGLHLFLLSVDEGITGYRDDSLQTVHRNQIQYG 119
           RVAIGASGGKDSTVLAYVLS+LNR H+YGL LFLLS+DEGITGYRDDSL+TV RN++QYG
Sbjct: 61  RVAIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSIDEGITGYRDDSLETVKRNEVQYG 120

Query: 120 LPLQVVSYMDLYGWTMDDIVKLIGLKNNCTFCGVFRRQALDRGAALLKADKLVTGHNADD 179
           LPL++VSY DLYGWTMD+IVK+IGLKNNCTFCGVFRRQALDRGAALLK +KLVTGHNADD
Sbjct: 121 LPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVEKLVTGHNADD 180

Query: 180 IAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKRLDYFSTE 239
           IAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFK+LDYFSTE
Sbjct: 181 IAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTE 240

Query: 240 CIYSPNAYRGFAREFIKDLERMRPRAILDIIKSGENFRISTTTKMPEQGTCERCGYISSQ 299
           CIYSPNAYRGFAREFIKDLER+RPRAILDIIKSGE+FRI+TTTKMPEQGTCERCGYISSQ
Sbjct: 241 CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRIATTTKMPEQGTCERCGYISSQ 300

Query: 300 KWCKACVLLDGLNRGLPKLXX-----XXXXXXXXXXXXXXXXKSIESKQCGTLDF 349
           KWCKACVLL+GLNRGLPK+                       KSIESKQCG+LDF
Sbjct: 301 KWCKACVLLEGLNRGLPKMGIGRPRGVNGDHNKETKKPGSVAKSIESKQCGSLDF 355


>AT2G44270.2 | Symbols: ROL5 | repressor of lrx1 |
           chr2:18298078-18300153 REVERSE LENGTH=358
          Length = 358

 Score =  558 bits (1438), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 278/365 (76%), Positives = 304/365 (83%), Gaps = 23/365 (6%)

Query: 1   MEGEGERKRRS-LCCVCNERRPSLKRPKTLEH----------ICRECFYTVFEDEIHQVI 49
           ME + ++   S LCC+CN RRP LKRPKTL+             RECFY VFE+EIHQVI
Sbjct: 1   MEAKNKKAVASRLCCLCNLRRPVLKRPKTLQQQKLGTHFYTVSVRECFYEVFEEEIHQVI 60

Query: 50  VTNNLFRRGERVAIGASGGKDSTVLAYVLSKLNRVHDYGLHLFLLSVDEGITGYRDDSLQ 109
           V N LF+ GERVAIGASGGKDSTVLAYVLS+LNR H+YGL LFLLS+DEGITGYRDDSL+
Sbjct: 61  VQNRLFKSGERVAIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSIDEGITGYRDDSLE 120

Query: 110 TVHRNQIQYGLPLQVVSYMDLYGWTMDDIVKLIGLKNNCTFCGVFRRQALDRGAALLKAD 169
           TV RN++QYGLPL++VSY DLYGWTMD+IVK+IGLKNNCTFCGVFRRQALDRGAALLK +
Sbjct: 121 TVKRNEVQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVE 180

Query: 170 KLVTGHNADDIAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAY 229
           KLVTGHNADDIAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPF +T       YAY
Sbjct: 181 KLVTGHNADDIAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFNFT-------YAY 233

Query: 230 FKRLDYFSTECIYSPNAYRGFAREFIKDLERMRPRAILDIIKSGENFRISTTTKMPEQGT 289
           FK+LDYFSTECIYSPNAYRGFAREFIKDLER+RPRAILDIIKSGE+FRI+TTTKMPEQGT
Sbjct: 234 FKKLDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRIATTTKMPEQGT 293

Query: 290 CERCGYISSQKWCKACVLLDGLNRGLPKLXX-----XXXXXXXXXXXXXXXXKSIESKQC 344
           CERCGYISSQKWCKACVLL+GLNRGLPK+                       KSIESKQC
Sbjct: 294 CERCGYISSQKWCKACVLLEGLNRGLPKMGIGRPRGVNGDHNKETKKPGSVAKSIESKQC 353

Query: 345 GTLDF 349
           G+LDF
Sbjct: 354 GSLDF 358


>AT1G76170.1 | Symbols:  | 2-thiocytidine tRNA biosynthesis protein,
           TtcA | chr1:28584179-28586225 REVERSE LENGTH=332
          Length = 332

 Score =  548 bits (1412), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/319 (83%), Positives = 285/319 (89%), Gaps = 4/319 (1%)

Query: 35  ECFYTVFEDEIHQVIVTNNLFRRGERVAIGASGGKDSTVLAYVLSKLNRVHDYGLHLFLL 94
           ECFY VFE+EIHQVIV N LF+ GERVAIGASGGKDS+VLAYVLS+LNR H YGL LFLL
Sbjct: 14  ECFYEVFEEEIHQVIVGNRLFKFGERVAIGASGGKDSSVLAYVLSELNRRHSYGLDLFLL 73

Query: 95  SVDEGITGYRDDSLQTVHRNQIQYGLPLQVVSYMDLYGWTMDDIVKLIGLKNNCTFCGVF 154
           S+DEGITGYRDDSL+TV RN++QYGLPLQ+VSY DLYGWTMD+IVK+IGLKNNCTFCGVF
Sbjct: 74  SIDEGITGYRDDSLETVKRNEVQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVF 133

Query: 155 RRQALDRGAALLKADKLVTGHNADDIAETVLLNILRGDIARLSRCTSITTGEDGPIPRCK 214
           RRQALDRGAALLK DKLVTGHNADDIAETV+LNILRGDIARLSRCTSITTGEDGPIPRCK
Sbjct: 134 RRQALDRGAALLKVDKLVTGHNADDIAETVVLNILRGDIARLSRCTSITTGEDGPIPRCK 193

Query: 215 PFKYTYEKEIVMYAYFKRLDYFSTECIYSPNAYRGFAREFIKDLERMRPRAILDIIKSGE 274
           PFKYTYEKEIVMYAYFK+LDYFSTECIYSPNAYRGFA EFI DLER+RPRAILDIIKSGE
Sbjct: 194 PFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFACEFINDLERLRPRAILDIIKSGE 253

Query: 275 NFRISTTTKMPEQGTCERCGYISSQKWCKACVLLDGLNRGLPKLXX----XXXXXXXXXX 330
           +FRI+TTTKMPEQGTCERCGYISSQKWCKACVLL+GLNRGLPK+                
Sbjct: 254 DFRIATTTKMPEQGTCERCGYISSQKWCKACVLLEGLNRGLPKMGIGRPRGNVNGDYKDI 313

Query: 331 XXXXXXKSIESKQCGTLDF 349
                 K+IESKQCG+LDF
Sbjct: 314 KARSTAKTIESKQCGSLDF 332