Miyakogusa Predicted Gene

Lj1g3v3330190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3330190.1 Non Chatacterized Hit- tr|I1JSC1|I1JSC1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.16027
PE,86.62,0,SIGMA70_2,RNA polymerase sigma-70 factor; sigma70-ECF: RNA
polymerase sigma factor, sigma-70,RNA pol,CUFF.30455.1
         (565 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATS...   548   e-156
AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymera...   244   1e-64
AT3G53920.1 | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit ...   210   2e-54
AT5G13730.1 | Symbols: SIG4, SIGD | sigma factor 4 | chr5:442913...   179   6e-45
AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma fac...   155   5e-38
AT1G64860.2 | Symbols: SIGA | sigma factor A | chr1:24098497-241...   141   1e-33
AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E | chr...   131   2e-30

>AT1G08540.1 | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2
           | RNApolymerase sigma subunit 2 | chr1:2703461-2706696
           FORWARD LENGTH=572
          Length = 572

 Score =  548 bits (1411), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 263/366 (71%), Positives = 302/366 (82%)

Query: 200 SNSITARSSRQTERKAKRVRATEKATTNIVSFKSGSTSRKKRVPVQEVDYSDPXXXXXXX 259
           S S+  RS+RQTERKA+R +  EK  + I S K+GS+ +KKR+  QEVD++DP       
Sbjct: 207 SVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMT 266

Query: 260 XXXXXXXXXXEEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRL 319
                     EE ELS GIQDL+KLE+LQ +L E+ G QPTFAQWA+ AGVDQK+LR+R+
Sbjct: 267 TSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRI 326

Query: 320 NYGIFCKEKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 379
           ++G  CK+KMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFST
Sbjct: 327 HHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFST 386

Query: 380 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEATGL 439
           YAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EE+AEATGL
Sbjct: 387 YAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGL 446

Query: 440 SMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLD 499
           SMKRL AVLL+PK PRSL+QKIG+NQNLKPSEVIADPEA T+E+ LIK+FM++DL+KVLD
Sbjct: 447 SMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLD 506

Query: 500 SLNPREKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAFXXXXXXXXXXXXXX 559
           SL  REKQVIRWRFGM+DGRMKTLQEIGEM+GVSRER+RQIES AF              
Sbjct: 507 SLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQ 566

Query: 560 YLVSQS 565
           YLV+QS
Sbjct: 567 YLVAQS 572


>AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymerase
           sigma-subunit F | chr2:15537502-15540016 REVERSE
           LENGTH=547
          Length = 547

 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/341 (38%), Positives = 196/341 (57%), Gaps = 1/341 (0%)

Query: 205 ARSSRQTERKAKRVRATEKATTNIVSFKSGSTSRKKRVPVQEVDYSDPXXXXXXXXXXXX 264
            RS RQ ER+AK  RA +    +   +    TS KK+   Q  D  D             
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 246

Query: 265 XXXXXEEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRLNYGIF 324
                EE EL   IQ L+KLEK++  L  + G +PT  +WA   G+    L+  ++ G  
Sbjct: 247 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 306

Query: 325 CKEKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 384
            +EK+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TYA+WW
Sbjct: 307 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 366

Query: 385 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRL 444
           I+Q++RKS+   SRTIRLP ++     +V EARK    E    P  EE+A   G+S ++L
Sbjct: 367 IRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKL 426

Query: 445 SAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPR 504
             +L   + P S++Q I  +Q+    E+  D   ET    + KQ M+  +  +L+ L+P+
Sbjct: 427 DKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPK 486

Query: 505 EKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 545
           E+++I+ RFG+D G+ ++L EIGE+ G+S+ER+RQ+ES A 
Sbjct: 487 ERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRAL 527


>AT3G53920.1 | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit C |
           chr3:19961041-19963820 REVERSE LENGTH=571
          Length = 571

 Score =  210 bits (534), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/272 (36%), Positives = 181/272 (66%), Gaps = 1/272 (0%)

Query: 271 EIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKEKMI 330
           E E+S G++ +  +E+++  L E+ G   + + WAA AG+++K L + L+YG +C+++++
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337

Query: 331 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 390
           KS   LV+ +A+NY+G G+  +DL+Q G  G+++GAE+FD ++G+KFSTY  +WI++++ 
Sbjct: 338 KSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMS 397

Query: 391 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RHPDDEEVAEATGLSMKRLSAVLL 449
             +S  +R + +P  ++     +++ARK L + +G ++  DEE+A+ TG S+K++ A   
Sbjct: 398 TMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQ 457

Query: 450 TPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVI 509
             K   S+++K+G     K  E   D   E+ EE +++Q  ++D+  +L+ L PREKQV+
Sbjct: 458 CLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVM 517

Query: 510 RWRFGMDDGRMKTLQEIGEMLGVSRERIRQIE 541
             R+G+ D R K+L+EIG++L VS+E IR+IE
Sbjct: 518 VLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIE 549


>AT5G13730.1 | Symbols: SIG4, SIGD | sigma factor 4 |
           chr5:4429132-4430744 REVERSE LENGTH=419
          Length = 419

 Score =  179 bits (453), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 101/281 (35%), Positives = 161/281 (57%), Gaps = 13/281 (4%)

Query: 270 EEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCK--- 326
           EE++L   +++  KLE L   + E         +  +V     +  +KR    I C+   
Sbjct: 127 EEVQLCLYLKEGAKLENLGTSVEEN--------EMVSVLLASGRGKKKRSANEILCRRKE 178

Query: 327 --EKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 384
             EK+ +   RLV+SIA  YQG G+NLQDL+QEG  GL+RGAE+FD  +G+K STY +WW
Sbjct: 179 AREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWW 238

Query: 385 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRL 444
           IKQA+ ++++ +SR ++LP  M E T +V EA   L  +  R P  EE+AE   L++  +
Sbjct: 239 IKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAV 298

Query: 445 SAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPR 504
              +   ++P SL++    N  +   E++  P+    EE + ++ MK ++E++L SL  R
Sbjct: 299 RLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTAR 358

Query: 505 EKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 545
           E +V+   FG++     + +EIG+ L +SRER+RQI   A 
Sbjct: 359 ESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIAL 399


>AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma factor
           A | chr1:24098497-24100746 FORWARD LENGTH=502
          Length = 502

 Score =  155 bits (393), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/282 (34%), Positives = 158/282 (56%), Gaps = 8/282 (2%)

Query: 270 EEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKEKM 329
           E + LS+ I+  ++L+  +  L ++ G +P+  Q A    + +  L+  L      +EK+
Sbjct: 204 EVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKL 263

Query: 330 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 389
             SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD+SKGF+ STY +WWI+Q V
Sbjct: 264 AMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGV 323

Query: 390 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLL 449
            ++L D SRT+RLP H+ E    ++ A+ +L  E G  P  + +AE+  +S K++     
Sbjct: 324 SRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKVRNATE 382

Query: 450 TPKAPRSLEQKIGINQNLKPSEV----IADPEAETAEEQLIKQF-MKKDLEKVLD-SLNP 503
                 SL++    + N  P E     IAD   E           +K+++ K++  +L  
Sbjct: 383 AVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGE 442

Query: 504 REKQVIRWRFGMDDGRMKTLQEIGEMLGVSRERIRQIESCAF 545
           REK++IR  +G+D   + T ++I + +G+SRER+RQ+   A 
Sbjct: 443 REKEIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVAL 483


>AT1G64860.2 | Symbols: SIGA | sigma factor A |
           chr1:24098497-24100739 FORWARD LENGTH=498
          Length = 498

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 140/253 (55%), Gaps = 7/253 (2%)

Query: 270 EEIELSEGIQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKEKM 329
           E + LS+ I+  ++L+  +  L ++ G +P+  Q A    + +  L+  L      +EK+
Sbjct: 204 EVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKL 263

Query: 330 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 389
             SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD+SKGF+ STY +WWI+Q V
Sbjct: 264 AMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGV 323

Query: 390 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLL 449
            ++L D SRT+RLP H+ E    ++ A+ +L  E G  P  + +AE+  +S K++     
Sbjct: 324 SRALVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKVRNATE 382

Query: 450 TPKAPRSLEQKIGINQNLKPSEV----IADPEAETAEEQLIKQF-MKKDLEKVLD-SLNP 503
                 SL++    + N  P E     IAD   E           +K+++ K++  +L  
Sbjct: 383 AVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGE 442

Query: 504 REKQVIRWRFGMD 516
           REK++IR  +G+D
Sbjct: 443 REKEIIRLYYGLD 455


>AT5G24120.1 | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E |
           chr5:8157794-8159746 REVERSE LENGTH=517
          Length = 517

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 144/288 (50%), Gaps = 5/288 (1%)

Query: 278 IQDLIKLEKLQEDLAEKCGDQPTFAQWAAVAGVDQKTLRKRLNYGIFCKEKMIKSNIRLV 337
           +Q +  L ++++ L +  G +P  A+ A    +    ++K++  G   + K+IK N+RLV
Sbjct: 232 MQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLV 291

Query: 338 ISIAKNYQGA---GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 394
           + +   Y      G   QDL Q G RGL+   ++F+  + F+ STY  +WI+ A+ +S++
Sbjct: 292 LFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMT 351

Query: 395 DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTPKAP 454
             + T R+PF +      + +A+ +L+ E GR P ++EV E   ++ +R   VL   K  
Sbjct: 352 TSNFT-RVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPV 410

Query: 455 RSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFG 514
            SL  K  + Q  +    I D +   A        ++  L+ VLDSL P+E  VIR R+G
Sbjct: 411 LSLNSKHSVTQE-EFINGITDVDGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYG 469

Query: 515 MDDGRMKTLQEIGEMLGVSRERIRQIESCAFXXXXXXXXXXXXXXYLV 562
           +D    +TL EI   L +SRE +R+ E  A               Y+V
Sbjct: 470 LDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYIV 517