Miyakogusa Predicted Gene

Lj1g3v3329510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3329510.1 tr|D7KE87|D7KE87_ARALL High mobility group family
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARA,58.26,2e-17,seg,NULL; HMG_box,High mobility group, superfamily;
HMG-box,High mobility group, superfamily; no des,CUFF.30397.1
         (118 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04880.1 | Symbols:  | HMG (high mobility group) box protein ...    95   1e-20
AT1G76110.1 | Symbols:  | HMG (high mobility group) box protein ...    71   1e-13
AT3G13350.1 | Symbols:  | HMG (high mobility group) box protein ...    69   9e-13

>AT1G04880.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr1:1376106-1378264 REVERSE LENGTH=448
          Length = 448

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/52 (80%), Positives = 45/52 (86%)

Query: 53  DPAHPKPNRSGYNFFFAEQHARLKLLNQAKDRDISRMIGELWNKLKEPERSV 104
           DP HPKPNRSGYNFFFAEQHARLK L+  KDRDISRMIGELWNKL E E+ +
Sbjct: 259 DPDHPKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELWNKLNEDEKLI 310


>AT1G76110.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr1:28555287-28557465 REVERSE LENGTH=338
          Length = 338

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 53  DPAHPKPNRSGYNFFFAEQHARLKLLNQAKDRDISRMIGELWNKLKEPERSVSNLLNL 110
           DP +PKPNRSGYNFFFAE+H +LK L   K+R+ +++IGE W+ L   ER V   + L
Sbjct: 251 DPNYPKPNRSGYNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGL 308


>AT3G13350.1 | Symbols:  | HMG (high mobility group) box protein
           with ARID/BRIGHT DNA-binding domain |
           chr3:4335721-4337804 REVERSE LENGTH=319
          Length = 319

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 54/104 (51%), Gaps = 11/104 (10%)

Query: 2   VKGVLYESPQTPMLPASASHHQSIIAKNNNTP-AVLGVQXXXXXXXXXXXXXDPAHPKPN 60
           +KGVLY  PQTP      S  Q  +     TP A++                D   PK +
Sbjct: 192 LKGVLYHIPQTP------SQSQQTM----ETPSAIVQSSQRRHRKKSKLAVVDTQKPKCH 241

Query: 61  RSGYNFFFAEQHARLKLLNQAKDRDISRMIGELWNKLKEPERSV 104
           RSGYNFFFAEQ+ARLK     ++R I++ IG +W+ L E E+ V
Sbjct: 242 RSGYNFFFAEQYARLKPEYHGQERSITKKIGHMWSNLTESEKQV 285