Miyakogusa Predicted Gene
- Lj1g3v3329390.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3329390.1 Non Chatacterized Hit- tr|G7KSG0|G7KSG0_MEDTR
Helicase, putative OS=Medicago truncatula
GN=MTR_7g080,89.54,0,DEAD-like helicases superfamily,Helicase,
superfamily 1/2, ATP-binding domain; helicase superfamily
,CUFF.30387.1
(981 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G59760.1 | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1... 1558 0.0
AT2G06990.1 | Symbols: HEN2 | RNA helicase, ATP-dependent, SK12/... 907 0.0
AT3G46960.1 | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1... 440 e-123
AT1G70070.1 | Symbols: EMB25, PDE317, ISE2 | DEAD/DEAH box helic... 266 6e-71
AT5G61140.1 | Symbols: | U5 small nuclear ribonucleoprotein hel... 115 1e-25
AT5G61140.2 | Symbols: | U5 small nuclear ribonucleoprotein hel... 115 1e-25
AT4G32700.2 | Symbols: | helicases;ATP-dependent helicases;nucl... 112 9e-25
AT1G20960.2 | Symbols: emb1507 | U5 small nuclear ribonucleoprot... 105 1e-22
AT1G20960.1 | Symbols: emb1507 | U5 small nuclear ribonucleoprot... 105 1e-22
AT2G42270.1 | Symbols: | U5 small nuclear ribonucleoprotein hel... 102 2e-21
AT3G27730.1 | Symbols: RCK, MER3 | ATP binding;ATP-dependent hel... 68 3e-11
>AT1G59760.1 | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1
protein | chr1:21984571-21990110 REVERSE LENGTH=988
Length = 988
Score = 1558 bits (4035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 771/995 (77%), Positives = 864/995 (86%), Gaps = 21/995 (2%)
Query: 1 MGSLKRKSPEE-----PTTQLQR--------GEELQYDCVHDVSYPHGYIHXXXXXXXXX 47
MGS+KRKS EE P ++QR EEL CVHDVS+P Y+
Sbjct: 1 MGSVKRKSVEESSDSAPPQKVQREDDSTQIINEEL-VGCVHDVSFPENYVPLAPSVH--- 56
Query: 48 THTEPAKKFPFTLDPFQSQAITCIENGESVMVSAHTSAGKTVVALYAIAMSLRDGQRVIY 107
+ PAK FPFTLD FQS+AI C++NGESVMVSAHTSAGKTVVA YAIAMSL++ QRVIY
Sbjct: 57 -NKPPAKDFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVIY 115
Query: 108 TSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVA 167
TSPIKALSNQKYR+FKEEFSDVGLMTGDVTIDPNASCLVMTTEI RSMQYKGSEI REVA
Sbjct: 116 TSPIKALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMREVA 175
Query: 168 WIIFDEVHYMRDRERGVVWEESIVMSPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIV 227
WIIFDEVHYMRD ERGVVWEESIVM+PKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIV
Sbjct: 176 WIIFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIV 235
Query: 228 YTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNALVPPSEGDRKKDNGKFHK 287
YTDYRPTPLQHY+FP+GG+GLYLVVDEK KF EDSFQKSLNALVP +E D+K+DNGKF K
Sbjct: 236 YTDYRPTPLQHYVFPAGGNGLYLVVDEKSKFHEDSFQKSLNALVPTNESDKKRDNGKFQK 295
Query: 288 GLMLGKVGEESDIFKIVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDDEKDNIE 347
GL++GK+GEESDIFK+VKMIIQRQYDPVILFSFSK+ECE LAMQM+KM LN DDEKD +E
Sbjct: 296 GLVIGKLGEESDIFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMVLNSDDEKDAVE 355
Query: 348 KIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA 407
IF SA+DMLSDDDKKLPQVSN+LP+LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
Sbjct: 356 TIFASAIDMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA 415
Query: 408 TETFSIGLNMPAKTVVFTNVRKFDGDKFRWITSGEYIQMSGRAGRRGIDERGICILMVDE 467
TETFSIGLNMPAKTVVFTNVRKFDGDKFRW++SGEYIQMSGRAGRRGID+RGICILMVDE
Sbjct: 416 TETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDE 475
Query: 468 KLEPSTAKMMVKGAADSLNSAFHLSYNMLLNQMRCEDGDPENLLRNSFYQFQADRAIPDH 527
K+EP+ AK M+KG+ADSLNSAFHLSYNMLLNQ+RCE+GDPENLLRNSF+QFQADRAIPD
Sbjct: 476 KMEPAVAKSMLKGSADSLNSAFHLSYNMLLNQLRCEEGDPENLLRNSFFQFQADRAIPDL 535
Query: 528 EKQIKALXXXXXXXXXXXXNSLKDYYHLLEQHRSLNKEVRDIVLSPRHCLPFLQPGRLVS 587
EKQIK+L SLK+YY+L+ Q++SL K++R+IV +P++CLPFL P R V
Sbjct: 536 EKQIKSLEEERDSLVIEEEESLKNYYNLILQYKSLKKDIREIVFTPKYCLPFLLPNRAVC 595
Query: 588 LQCTXXXXX-XXXXXEDQLTWGLVINFERVKSVSEDDVSIKPEDASYNVDILTRCMVSKD 646
L CT EDQ TWG+++ F +VKS+SEDD S +PEDA+Y VD+LTRCMVSKD
Sbjct: 596 LDCTNDDEEPQSFSIEDQDTWGVIMKFNKVKSLSEDDDSRRPEDANYTVDVLTRCMVSKD 655
Query: 647 KIGKKSVKIVPLKEVGEPLVVSVPISQINTISSLRLYIPKDLLSLETRQNTLKKVLETLS 706
+GKK VK VP+KE GEP+VV+VP+SQI ++SS + IPKDL+ LE R+N LKKV E LS
Sbjct: 656 GVGKKKVKAVPIKERGEPVVVTVPLSQIKSLSSAIMNIPKDLVPLEARENALKKVSELLS 715
Query: 707 RFGEKGLPLLDPEEDMKIQSNSYKKASRRIEALESLFEKHEIAKSPLIKQKLKVLQRKQE 766
R + G+P LDPE DMKI+S+SYKK RR+EALE+LFEKH+IAKSPLI +KLKVLQ K+E
Sbjct: 716 RHPD-GIP-LDPEVDMKIKSSSYKKTVRRLEALENLFEKHKIAKSPLITEKLKVLQMKEE 773
Query: 767 LTARIKSIKKTIRSSTVLAFKDELKARKRVLRRLGYATSDNVVELKGKVACEISSADELI 826
L A+IKS+KKT+RSST LAFKDELKARKRVLRRLGY TSDNVVELKGKVACEISSA+EL
Sbjct: 774 LIAKIKSLKKTVRSSTALAFKDELKARKRVLRRLGYITSDNVVELKGKVACEISSAEELT 833
Query: 827 LTELMFSGVLKDIKVEEMVSLLSCLVWREKIHDGAKPREELDLLFAQLQDTARRVAQLQL 886
LTELMFSG+ KD KVEE+VSLLSC VWRE++ D AKPREELDLLF QLQDTARRVA++QL
Sbjct: 834 LTELMFSGIFKDAKVEELVSLLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAEVQL 893
Query: 887 ECKVEIDVESFVKSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQL 946
+CKVEIDVESFV+SFRPDIMEAVYAWAKGSKFYE+MEI +VFEGSLIRAIRR+EEVLQQL
Sbjct: 894 DCKVEIDVESFVQSFRPDIMEAVYAWAKGSKFYEVMEIARVFEGSLIRAIRRMEEVLQQL 953
Query: 947 IEAAKSIGETQLETKFEEAVSKIKRDIVFAASLYL 981
I AAKSIGETQLE K EEAVSKIKRDIVFAASLYL
Sbjct: 954 IVAAKSIGETQLEAKLEEAVSKIKRDIVFAASLYL 988
>AT2G06990.1 | Symbols: HEN2 | RNA helicase, ATP-dependent,
SK12/DOB1 protein | chr2:2895135-2900909 FORWARD
LENGTH=995
Length = 995
Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/993 (47%), Positives = 654/993 (65%), Gaps = 30/993 (3%)
Query: 3 SLKRKSPEEPTTQLQ-RGEELQYDCVHDVSYPHGY-------IHXXXXXXXXXTHTEPAK 54
S K +S E PT + + + L+ CVH+V+ P+ Y IH + + AK
Sbjct: 19 SSKLRSDETPTPEPRTKRRSLKRACVHEVAVPNDYTPTKEETIHGTLDNPVF--NGDMAK 76
Query: 55 KFPFTLDPFQSQAITCIENGESVMVSAHTSAGKTVVALYAIAMSLRDGQRVIYTSPIKAL 114
+PF LDPFQS ++ C+E ES++VSAHTSAGKT VA YAIAM+ RD QRVIYTSP+KAL
Sbjct: 77 TYPFKLDPFQSVSVACLERKESILVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKAL 136
Query: 115 SNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVAWIIFDEV 174
SNQKYRE + EF DVGLMTGDVT+ PNASCLVMTTEI R+M Y+GSE+ +EVAW+IFDE+
Sbjct: 137 SNQKYRELQHEFKDVGLMTGDVTLSPNASCLVMTTEILRAMLYRGSEVLKEVAWVIFDEI 196
Query: 175 HYMRDRERGVVWEESIVMSPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPT 234
HYM+DRERGVVWEESI+ P + VFLSAT+ NA EFA+W+ +H+QPCH+VYTD+RPT
Sbjct: 197 HYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYLHKQPCHVVYTDFRPT 256
Query: 235 PLQHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNALVPPSEGDRKK--DNGKFHKGLMLG 292
PLQHY FP GG GLYLVVD+ +FREDSF K + P D KK + +G G
Sbjct: 257 PLQHYAFPMGGGGLYLVVDDNEQFREDSFVKMQDTFPKPKSNDGKKSANGKSGGRGAKGG 316
Query: 293 KVGEESDIFKIVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDDEKDNIEKIFWS 352
+SD++KIVKMI++R+++PVI+FSFS+RECE A+ M+K+D N D+EK+ +E++F +
Sbjct: 317 GGPGDSDVYKIVKMIMERKFEPVIIFSFSRRECEQHALSMSKLDFNTDEEKEVVEQVFNN 376
Query: 353 AMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFS 412
AM L+++D+ LP + MLPLL+RGI VHHSGLLP++KE++E+LFQEGL+K LFATETF+
Sbjct: 377 AMQCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFA 436
Query: 413 IGLNMPAKTVVFTNVRKFDGDKFRWITSGEYIQMSGRAGRRGIDERGICILMVDEKLEPS 472
+GLNMPAKTVVFT V+K+DGD R+I SGEYIQMSGRAGRRG DERGICI+M+DE++E +
Sbjct: 437 MGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMN 496
Query: 473 TAKMMVKGAADSLNSAFHLSYNMLLNQMRCEDGD--PENLLRNSFYQFQADRAIPDHEKQ 530
T + M+ G L S F LSY +LN + +G E+++R+SF+QFQ ++A+PD +
Sbjct: 497 TLRDMMLGKPAPLLSTFRLSYYTILNLLSRAEGQFTAEHVIRHSFHQFQHEKALPDIGNK 556
Query: 531 IKALXXXXXXXXXXXXNSLKDYYHLLEQHRSLNKEVRDIVLSPRHCLPFLQPGRLVSLQC 590
+ L + +Y++L K++ ++ P L FL GRLV ++
Sbjct: 557 VSKLEEEAAILNASGEAEVAEYHNLQFDIAKHEKKLMSEIIRPERVLCFLDTGRLVKIR- 615
Query: 591 TXXXXXXXXXXEDQLTWGLVINFERVKSVSEDDVSIKPEDASYNVDILTRCMVSKDKIGK 650
E WG + VK+ S S Y VD L C + G
Sbjct: 616 -----------EGGTDWGWGVVVNVVKNSSVGTGSASSHGGGYIVDTLLHCSTGFSENGA 664
Query: 651 KSVKIVP-LKEVGEPLVVSVPISQINTISSLRLYIPKDLLSLETRQNTLKKVLETLSRFG 709
K P E GE VV V + I+ +S LR+ +P DL +E RQ+ L + E SRF
Sbjct: 665 KPKPCPPRAGEKGEMHVVPVQLPLISALSRLRISVPSDLRPVEARQSILLALQELSSRF- 723
Query: 710 EKGLPLLDPEEDMKIQSNSYKKASRRIEALESLFEKHEIAKSPLIKQKLKVLQRKQELTA 769
G P L P +DM IQ +IE +E H + KS Q++K QRK E+
Sbjct: 724 PLGFPKLHPVKDMNIQDTEIVDLVSQIEEVEQKLLAHPMHKSE-DDQQIKSFQRKAEVNY 782
Query: 770 RIKSIKKTIRSSTVLAFKDELKARKRVLRRLGYATSDNVVELKGKVACEISSADELILTE 829
I+ +K +R S + F+DELK R RVL++LG+ +D VV++KG+ AC I + DEL++TE
Sbjct: 783 EIQQLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTE 842
Query: 830 LMFSGVLKDIKVEEMVSLLSCLVWREKIHDGAKPREELDLLFAQLQDTARRVAQLQLECK 889
LMF+G D+ ++ +L SC + +K ++ R EL QLQD+AR++A++Q ECK
Sbjct: 843 LMFNGTFNDLDHHQVAALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEIQHECK 902
Query: 890 VEIDVESFVKS-FRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIE 948
+EIDVE +V+S RP +M+ +Y+W+KG+ F EI+++T +FEGS+IR+ RRL+E L QL
Sbjct: 903 LEIDVEEYVESTIRPFLMDVIYSWSKGASFAEIIQMTDIFEGSIIRSARRLDEFLNQLRA 962
Query: 949 AAKSIGETQLETKFEEAVSKIKRDIVFAASLYL 981
AA+++GE+ LE+KF A ++R I+FA SLYL
Sbjct: 963 AAEAVGESSLESKFAAASESLRRGIMFANSLYL 995
>AT3G46960.1 | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1
protein | chr3:17291004-17298067 REVERSE LENGTH=1347
Length = 1347
Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust.
Identities = 244/579 (42%), Positives = 346/579 (59%), Gaps = 45/579 (7%)
Query: 53 AKKFPFTLDPFQSQAITCIENGESVMVSAHTSAGKTVVALYAIAMSLRDGQRVIYTSPIK 112
A +FPF LD FQ +AI C+E GESV V+AHTSAGKTVVA YA A++ + R +YT+PIK
Sbjct: 354 AIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIK 413
Query: 113 ALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVAWIIFD 172
+SNQKYR+F +F DVGL+TGDV+I P ASCL+MTTEI RSM Y+G++I R++ W+IFD
Sbjct: 414 TISNQKYRDFCGKF-DVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 472
Query: 173 EVHYMRDRERGVVWEESIVMSPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYR 232
EVHY+ D ERGVVWEE I+M P++ FV LSATVPN EFADW+ + Q+ + T R
Sbjct: 473 EVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTKQKEIRVTGTTKR 532
Query: 233 PTPLQHYIFPSGGDGLYLVVDE-----KG--KFREDSFQKSLNAL-VPP----------- 273
P PL+H +F SG LY V + KG ++ +K+ NA+ V P
Sbjct: 533 PVPLEHCLFYSG--ELYKVCENEVFLSKGIKDAKDSQKKKNSNAVSVAPKQQMGSSAHQD 590
Query: 274 ---SEGDRKKDNGKFHKGLMLGKVGEE-----------------SDIFKIVKMIIQRQYD 313
S+ GK +K + VG+ S+ ++ + +
Sbjct: 591 GSKSQKHEAHSRGKQNKHSSVKDVGKSSYSGNSQNNGAFRRSAASNWLLLINKLSKMSLL 650
Query: 314 PVILFSFSKRECEFLAMQMAKMDLNGDDEKDNIEKIFWSAMDMLSDDDKKLPQVSNMLPL 373
PV++F FSK C+ A + DL EK I A L D+ LPQV + L
Sbjct: 651 PVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVLRLQSL 710
Query: 374 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGD 433
L RGIGVHH+GLLPI+KEV+E+LF G+IK LF+TETF++G+N PA+TVVF +RKFDG
Sbjct: 711 LHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRKFDGK 770
Query: 434 KFRWITSGEYIQMSGRAGRRGIDERGICILMV-DEKLEPSTAKMMVKGAADSLNSAFHLS 492
+FR + GEY QM+GRAGRRG+D+ G ++M DE + S + ++ G+A L S F L+
Sbjct: 771 EFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDESDLRRVIVGSATRLESQFRLT 830
Query: 493 YNMLLNQMRCEDGDPENLLRNSFYQFQADRAIPDHEK--QIKALXXXXXXXXXXXXNSLK 550
Y M+L+ +R E+ E++L+ SF +F A + +P+ ++ IK +++
Sbjct: 831 YIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEKQQLLMIKRSLPTKHIECIKGEPAIE 890
Query: 551 DYYHLLEQHRSLNKEVRDIVLSPRHCLPFLQPGRLVSLQ 589
DYY + + N ++ + V+ + FL GR+V ++
Sbjct: 891 DYYDMYMEANEYNNKMSEAVMQSPYAQSFLVQGRVVVMK 929
Score = 142 bits (359), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 167/290 (57%), Gaps = 11/290 (3%)
Query: 697 TLKKVLETLSRFGEKGLPLLDPEEDMKIQS----NSYKKASRRIEALESLFEKHEIAKSP 752
T++++L+ L G K P LDP +D+K++ +Y K + ++ + S+ + H K
Sbjct: 1061 TVQQLLD-LKSDGNKFPPALDPVKDLKLKDAELVETYYKWTNLLQKM-SMNKCHGCVK-- 1116
Query: 753 LIKQKLKVLQRKQELTARIKSIKKTIRSSTVLAFKDELKARKRVLRRLGYATSDNVVELK 812
+++ +K+ + ++ +K ++ + +L + R VL+ +G D VV++K
Sbjct: 1117 -LEEHMKLAREIKKHKTDLKDLEFQMSDEALLQMP-AFQGRIDVLKNIGCIDDDLVVQIK 1174
Query: 813 GKVACEISSADELILTELMFSGVLKDIKVEEMVSLLSCLVWREKIHDGAKPREELDLLFA 872
G+VACE++S +ELI T +F ++++ EE V+++S V+++K +L
Sbjct: 1175 GRVACEMNSGEELICTVCLFENQFEELEPEEAVAIMSAFVFQQKNTSAPTLTPKLAKAKQ 1234
Query: 873 QLQDTARRVAQLQLECKVEIDVESFVK-SFRPDIMEAVYAWAKGSKFYEIMEITQVFEGS 931
+L DTA R+ +LQ + ++ID E + + + + ++E VY WAKG+ F EI E+T V EG
Sbjct: 1235 RLYDTAIRLGELQAQYNLQIDPEEYAQENLKFGLVEVVYEWAKGTPFAEICELTDVPEGL 1294
Query: 932 LIRAIRRLEEVLQQLIEAAKSIGETQLETKFEEAVSKIKRDIVFAASLYL 981
++R I RL+E ++ AA +G + L K + A + IKRDIVFAASLY+
Sbjct: 1295 IVRTIVRLDETCREFKNAAAIMGNSALHKKMDAASNAIKRDIVFAASLYV 1344
>AT1G70070.1 | Symbols: EMB25, PDE317, ISE2 | DEAD/DEAH box
helicase, putative | chr1:26390016-26394148 REVERSE
LENGTH=1171
Length = 1171
Score = 266 bits (680), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 174/478 (36%), Positives = 250/478 (52%), Gaps = 45/478 (9%)
Query: 56 FPFTLDPFQSQAITCIENGESVMVSAHTSAGKTVVALYAIAMSLRDGQRVIYTSPIKALS 115
+ F +D FQ AI G SV+VSA TS+GKT++A A ++ G+R+ YT+P+KALS
Sbjct: 151 YDFRIDKFQRLAIEAFLRGSSVVVSAPTSSGKTLIAEAAAVSTVAKGRRLFYTTPLKALS 210
Query: 116 NQKYREFKEEFSD--VGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITR------EVA 167
NQK+REF+E F D VGL+TGD I+ +A ++MTTEI R+M Y+ + V
Sbjct: 211 NQKFREFRETFGDDNVGLLTGDSAINKDAQIVIMTTEILRNMLYQSVGMASSGTGLFHVD 270
Query: 168 WIIFDEVHYMRDRERGVVWEESIVMSPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIV 227
I+ DEVHY+ D RG VWEE ++ PK + + LSATV N E A W+ ++H + +V
Sbjct: 271 AIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGEIHGK-TELV 329
Query: 228 YTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNAL-VPPSEGDRKKDNGKFH 286
+ RP PL Y S L ++DEKG + + SLN L + SE + D+ +
Sbjct: 330 TSTRRPVPLTWYF--STKHSLLPLLDEKGI--NVNRKLSLNYLQLSASEARFRDDDDGYR 385
Query: 287 KGLMLGKVGEES---------------DIFKIVKMIIQRQYD-----------PVILFSF 320
K + G+ S +I KI + + + D P I F F
Sbjct: 386 KRRSKKRGGDTSYNNLVNVTDYPLSKNEINKIRRSQVPQISDTLWHLQGKNMLPAIWFIF 445
Query: 321 SKRECEFLAMQMAKMDLNGDDEKDNIEKIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGV 380
++R C+ + L D EK +E + +L D + +L RGI
Sbjct: 446 NRRGCDAAVQYVENFQLLDDCEKSEVE-LALKKFRVLYPDAVRESAEKGLL----RGIAA 500
Query: 381 HHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWITS 440
HH+G LP+ K IE LFQ GL+K +FATET + G+NMPA+T V +++ K G++ +
Sbjct: 501 HHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGNERIELGP 560
Query: 441 GEYIQMSGRAGRRGIDERGICILMVDEKLEPSTAKMMVKGAADSLNSAFHLSYNMLLN 498
E QM+GRAGRRGIDE+G +L+ +V L S F SY M+LN
Sbjct: 561 NELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQFTASYGMVLN 618
>AT5G61140.1 | Symbols: | U5 small nuclear ribonucleoprotein
helicase | chr5:24589999-24603311 FORWARD LENGTH=2146
Length = 2146
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 124/494 (25%), Positives = 211/494 (42%), Gaps = 107/494 (21%)
Query: 9 PEEPTTQLQRGEEL----QYDCVHDVSYPHGYIHXXXXXXXXXTHTEPAKKFPFTLDPFQ 64
P PT Q++ GE+L + D ++ HGY +L+ Q
Sbjct: 475 PPTPTAQMKPGEKLIEIKELDDFAQAAF-HGYK---------------------SLNRIQ 512
Query: 65 SQAI-TCIENGESVMVSAHTSAGKTVVA----LYAIAMSLRDGQ------RVIYTSPIKA 113
S+ T E+++V A T AGKT +A L+ I RDG +++Y +P+KA
Sbjct: 513 SRIFQTVYHTNENILVCAPTGAGKTNIAMISVLHEIKQHFRDGYLHKNEFKIVYVAPMKA 572
Query: 114 LSNQKYREFKEEFSDVGL----MTGDVTIDPN----ASCLVMTTEIWRSMQYKGSEITRE 165
L+ + F + + + +TGD+ + +V T E W + K S+++
Sbjct: 573 LAAEVTSAFSRRLAPLNMVVKELTGDMQLTKTELEETQMIVTTPEKWDVITRKSSDMSMS 632
Query: 166 --VAWIIFDEVHYMRDRERGVVWEESIVMSPKNS-------RFVFLSATVPNAKEFADWV 216
V +I DEVH + D +RG V E + + + R V LSAT+P+ + A ++
Sbjct: 633 MLVKLLIIDEVHLLND-DRGAVIEALVARTLRQVESTQTMIRIVGLSATLPSYLQVAQFL 691
Query: 217 AKVHQQPCHIVYTDYRPTPL-QHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNALVPPSE 275
+ YRP PL Q YI G + E ++K ++++ +
Sbjct: 692 RVNTDTGLFYFDSSYRPVPLAQQYI----GITEHNFAARNELLNEICYKKVVDSI---KQ 744
Query: 276 GDRKKDNGKFHKGLMLGKVGEESDIFKIVKMIIQ--RQYDPVILFSFSKRECEFLAMQMA 333
G H+ ++ V D K + ++ RQY+ + LF+ ++ +F Q+
Sbjct: 745 G---------HQAMIF--VHSRKDTSKTAEKLVDLARQYETLDLFT-NETHPQF---QLM 789
Query: 334 KMDLNGDDEKDNIEKIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVI 393
K D+ KD ++ + G G+HH+G+L + +
Sbjct: 790 KKDVMKSRNKD-------------------------LVKFFEAGFGIHHAGMLRSDRTLT 824
Query: 394 EILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWITSG--EYIQMSGRAG 451
E LF +GL+K L T T + G+N+PA TVV + +D W G + +Q+ GRAG
Sbjct: 825 ERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAG 884
Query: 452 RRGIDERGICILMV 465
R D+ G I++
Sbjct: 885 RPQFDKSGEGIIIT 898
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/435 (24%), Positives = 193/435 (44%), Gaps = 81/435 (18%)
Query: 60 LDPFQSQAITCIENGES-VMVSAHTSAGKTVVALYAIA--MSLRDGQRVIYTSPIKALSN 116
+P Q+Q + + ++ V+V A T +GKT+ A A+ S + +V+Y +P+KA+
Sbjct: 1345 FNPIQTQIFHVLYHTDNNVLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAPLKAIVR 1404
Query: 117 QKYREFKEEF-----SDVGLMTGDVTIDP----NASCLVMTTEIWR--SMQYKGSEITRE 165
++ ++K+ ++ MTGD T D +A ++ T E W S + ++
Sbjct: 1405 ERMNDWKKHLVAPLGKEMVEMTGDYTPDLVALLSADIIISTPEKWDGISRNWHTRSYVKK 1464
Query: 166 VAWIIFDEVHYMRDRERGVVWEESIV-------MSPKNSRFVFLSATVPNAKEFADWVAK 218
V +I DE+H + +RG + E + + ++ RFV LS + NA + ADW+
Sbjct: 1465 VGLVILDEIHLL-GADRGPILEVIVSRMRYISSQTERSVRFVGLSTALANAGDLADWLG- 1522
Query: 219 VHQQPCHIVYTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNALVPPSEGDR 278
V + RP P++ +I G G Y + +N++ P+
Sbjct: 1523 VGEIGLFNFKPSVRPVPIEVHI--QGYPGKY-------------YCPRMNSMNKPA---- 1563
Query: 279 KKDNGKFHKGLMLGKVGEESDIFKIVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLN 338
+ PV++F S+R+ A+ + + +
Sbjct: 1564 ------------------------YAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAAS 1599
Query: 339 GDDEKDNIEKIFWSAMDMLSDDDKK--LPQVS--NMLPLLKRGIGVHHSGLLPILKEVIE 394
D + F S +S++D + L Q++ N+ L+ GIG+HH+GL + +E
Sbjct: 1600 -----DEHPRQFLS----VSEEDLQMVLSQITDQNLRHTLQFGIGLHHAGLNDHDRSAVE 1650
Query: 395 ILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWITS--GEYIQMSGRAGR 452
LF I+ L +T T + G+N+PA V+ FDG R++ E +QM GRAGR
Sbjct: 1651 ELFTNNKIQVLVSTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTEILQMMGRAGR 1710
Query: 453 RGIDERGICILMVDE 467
D+ G +++V E
Sbjct: 1711 PQFDQHGKAVILVHE 1725
>AT5G61140.2 | Symbols: | U5 small nuclear ribonucleoprotein
helicase | chr5:24589999-24603311 FORWARD LENGTH=2157
Length = 2157
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 124/494 (25%), Positives = 211/494 (42%), Gaps = 107/494 (21%)
Query: 9 PEEPTTQLQRGEEL----QYDCVHDVSYPHGYIHXXXXXXXXXTHTEPAKKFPFTLDPFQ 64
P PT Q++ GE+L + D ++ HGY +L+ Q
Sbjct: 475 PPTPTAQMKPGEKLIEIKELDDFAQAAF-HGYK---------------------SLNRIQ 512
Query: 65 SQAI-TCIENGESVMVSAHTSAGKTVVA----LYAIAMSLRDGQ------RVIYTSPIKA 113
S+ T E+++V A T AGKT +A L+ I RDG +++Y +P+KA
Sbjct: 513 SRIFQTVYHTNENILVCAPTGAGKTNIAMISVLHEIKQHFRDGYLHKNEFKIVYVAPMKA 572
Query: 114 LSNQKYREFKEEFSDVGL----MTGDVTIDPN----ASCLVMTTEIWRSMQYKGSEITRE 165
L+ + F + + + +TGD+ + +V T E W + K S+++
Sbjct: 573 LAAEVTSAFSRRLAPLNMVVKELTGDMQLTKTELEETQMIVTTPEKWDVITRKSSDMSMS 632
Query: 166 --VAWIIFDEVHYMRDRERGVVWEESIVMSPKNS-------RFVFLSATVPNAKEFADWV 216
V +I DEVH + D +RG V E + + + R V LSAT+P+ + A ++
Sbjct: 633 MLVKLLIIDEVHLLND-DRGAVIEALVARTLRQVESTQTMIRIVGLSATLPSYLQVAQFL 691
Query: 217 AKVHQQPCHIVYTDYRPTPL-QHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNALVPPSE 275
+ YRP PL Q YI G + E ++K ++++ +
Sbjct: 692 RVNTDTGLFYFDSSYRPVPLAQQYI----GITEHNFAARNELLNEICYKKVVDSI---KQ 744
Query: 276 GDRKKDNGKFHKGLMLGKVGEESDIFKIVKMIIQ--RQYDPVILFSFSKRECEFLAMQMA 333
G H+ ++ V D K + ++ RQY+ + LF+ ++ +F Q+
Sbjct: 745 G---------HQAMIF--VHSRKDTSKTAEKLVDLARQYETLDLFT-NETHPQF---QLM 789
Query: 334 KMDLNGDDEKDNIEKIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVI 393
K D+ KD ++ + G G+HH+G+L + +
Sbjct: 790 KKDVMKSRNKD-------------------------LVKFFEAGFGIHHAGMLRSDRTLT 824
Query: 394 EILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWITSG--EYIQMSGRAG 451
E LF +GL+K L T T + G+N+PA TVV + +D W G + +Q+ GRAG
Sbjct: 825 ERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAG 884
Query: 452 RRGIDERGICILMV 465
R D+ G I++
Sbjct: 885 RPQFDKSGEGIIIT 898
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/435 (24%), Positives = 193/435 (44%), Gaps = 81/435 (18%)
Query: 60 LDPFQSQAITCIENGES-VMVSAHTSAGKTVVALYAIA--MSLRDGQRVIYTSPIKALSN 116
+P Q+Q + + ++ V+V A T +GKT+ A A+ S + +V+Y +P+KA+
Sbjct: 1356 FNPIQTQIFHVLYHTDNNVLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAPLKAIVR 1415
Query: 117 QKYREFKEEF-----SDVGLMTGDVTIDP----NASCLVMTTEIWR--SMQYKGSEITRE 165
++ ++K+ ++ MTGD T D +A ++ T E W S + ++
Sbjct: 1416 ERMNDWKKHLVAPLGKEMVEMTGDYTPDLVALLSADIIISTPEKWDGISRNWHTRSYVKK 1475
Query: 166 VAWIIFDEVHYMRDRERGVVWEESIV-------MSPKNSRFVFLSATVPNAKEFADWVAK 218
V +I DE+H + +RG + E + + ++ RFV LS + NA + ADW+
Sbjct: 1476 VGLVILDEIHLL-GADRGPILEVIVSRMRYISSQTERSVRFVGLSTALANAGDLADWLG- 1533
Query: 219 VHQQPCHIVYTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNALVPPSEGDR 278
V + RP P++ +I G G Y + +N++ P+
Sbjct: 1534 VGEIGLFNFKPSVRPVPIEVHI--QGYPGKY-------------YCPRMNSMNKPA---- 1574
Query: 279 KKDNGKFHKGLMLGKVGEESDIFKIVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLN 338
+ PV++F S+R+ A+ + + +
Sbjct: 1575 ------------------------YAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAAS 1610
Query: 339 GDDEKDNIEKIFWSAMDMLSDDDKK--LPQVS--NMLPLLKRGIGVHHSGLLPILKEVIE 394
D + F S +S++D + L Q++ N+ L+ GIG+HH+GL + +E
Sbjct: 1611 -----DEHPRQFLS----VSEEDLQMVLSQITDQNLRHTLQFGIGLHHAGLNDHDRSAVE 1661
Query: 395 ILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWITS--GEYIQMSGRAGR 452
LF I+ L +T T + G+N+PA V+ FDG R++ E +QM GRAGR
Sbjct: 1662 ELFTNNKIQVLVSTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTEILQMMGRAGR 1721
Query: 453 RGIDERGICILMVDE 467
D+ G +++V E
Sbjct: 1722 PQFDQHGKAVILVHE 1736
>AT4G32700.2 | Symbols: | helicases;ATP-dependent helicases;nucleic
acid binding;ATP binding;DNA-directed DNA
polymerases;DNA binding | chr4:15767440-15779185 FORWARD
LENGTH=2154
Length = 2154
Score = 112 bits (281), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 116/455 (25%), Positives = 194/455 (42%), Gaps = 90/455 (19%)
Query: 53 AKKFPFTLDPFQSQAITCIENGESVMVSAHTSAGKTVVA-LYAIAMSLRDGQRVIYTSPI 111
+K +P+ ++ Q + N ++ A TSAGK+ VA + + +R G+ + P
Sbjct: 513 SKLYPWQVECLQVDGVLQKRN---LVYCASTSAGKSFVAEVLMLRRVIRTGKMALLVLPY 569
Query: 112 KALSNQKYREFKEEFSDVGLMT-------GDVTIDPNASCLVMTTEIWRSMQYKGSEITR 164
++ +K + +G G T+ + S V T E S+ + E R
Sbjct: 570 VSICAEKAEHLEVLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGR 629
Query: 165 --EVAWIIFDEVHYMRDRERGVVWEESIV-------------------------MSPKNS 197
E+ I+ DE+H + D+ RG + E + P +
Sbjct: 630 LSELGIIVIDELHMVGDQHRGYLLELMLTKLRYAAGEGSSESSSGESSGTSSGKADPAHG 689
Query: 198 -RFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYIFPSGGDGLYLVVDEKG 256
+ V +SAT+PN ADW+ Q T++RP PL+ YI
Sbjct: 690 LQIVGMSATMPNVGAVADWLQAALYQ------TEFRPVPLEEYI---------------- 727
Query: 257 KFREDSFQKSLNAL-VPPSEGDRKKDNGKFHKGLMLGKVGEESDIFKIVKMIIQRQYDPV 315
K + K + + P D M GK + I ++ ++Q + + V
Sbjct: 728 KVGSTIYNKKMEVVRTIPKAAD------------MGGK--DPDHIVELCNEVVQ-EGNSV 772
Query: 316 ILFSFSKRECEFLAMQMAKM----DLNGDDEKDNIEKIFWSAMDMLSDDDKKL-PQVSNM 370
++F S++ CE A ++K+ +N D E I SA+D L + P +
Sbjct: 773 LIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIR-SAIDALRRSPSGVDPVLEET 831
Query: 371 LPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKF 430
LP G+ HH+GL +E++E +++GL++ L AT T + G+N+PA+ V+F +
Sbjct: 832 LP---SGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR--QPM 886
Query: 431 DGDKFRWITSGEYIQMSGRAGRRGIDERGICILMV 465
G F I Y QMSGRAGR GID +G +L+
Sbjct: 887 IGRDF--IDGTRYKQMSGRAGRTGIDTKGDSVLIC 919
>AT1G20960.2 | Symbols: emb1507 | U5 small nuclear ribonucleoprotein
helicase, putative | chr1:7302591-7309914 REVERSE
LENGTH=2171
Length = 2171
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 113/453 (24%), Positives = 199/453 (43%), Gaps = 89/453 (19%)
Query: 50 TEPAKKFPFTLDPFQSQAI-TCIENGESVMVSAHTSAGKTVVALYAIAMSLR-----DGQ 103
+PA K L+ QS+ T + E++++ A T AGKT VA+ I L DG
Sbjct: 495 AQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGT 554
Query: 104 ------RVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNAS--------CLVMTT 149
+++Y +P+KAL + D G++ +++ D + + +V T
Sbjct: 555 YNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIVTTP 614
Query: 150 EIWRSMQYKGSE--ITREVAWIIFDEVHYMRDRERGVVWEE-------SIVMSPKNSRFV 200
E W + K + T+ V +I DE+H + D RG V E I + +N R V
Sbjct: 615 EKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDN-RGPVLESIVARTLRQIETTKENIRLV 673
Query: 201 FLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFRE 260
LSAT+PN ++ A ++ ++ YRP PL Y+ + K +
Sbjct: 674 GLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQ---------YIGISVKKPLQR 724
Query: 261 DSFQKSLNALVPPSEGDRKKDNGKFHKGLMLGKVGEESDIFKIVKMIIQRQYDPVILFSF 320
FQ +N L + K +L G+ V++F
Sbjct: 725 --FQ-LMNDLC-------------YQK--VLAGAGKHQ----------------VLIFVH 750
Query: 321 SKRECEFLAMQMAKMDLNGDD-----EKDNIEK-IFWSAMDMLSDDDKKLPQVSNMLPLL 374
S++E A + + D ++D++ + + S D++ + D K ++LP
Sbjct: 751 SRKETSKTARAIRDTAMANDTLSRFLKEDSVTRDVLHSHEDIVKNSDLK-----DILPY- 804
Query: 375 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDK 434
G +HH+GL +E++E LF +G ++ L +T T + G+N+PA TV+ + ++ +K
Sbjct: 805 --GFAIHHAGLSRGDREIVETLFSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEK 862
Query: 435 FRW--ITSGEYIQMSGRAGRRGIDERGICILMV 465
W ++ + +QM GRAGR D+ G I++
Sbjct: 863 GAWMELSPLDVMQMLGRAGRPQYDQHGEGIIIT 895
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 190/451 (42%), Gaps = 115/451 (25%)
Query: 60 LDPFQSQAITCIEN-GESVMVSAHTSAGKTVVALYAIAMSLRDG----QRVIYTSPIKAL 114
+P Q+Q T + N ++V+V+A T +GKT+ A +AI + +G RV+Y +P++A+
Sbjct: 1351 FNPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILRNHHEGPDATMRVVYIAPLEAI 1410
Query: 115 SNQKYREFKEEFS-DVGL----MTGDVTID----PNASCLVMTTEIWRSM--QYKGSEIT 163
+ +++R ++ +F +GL +TG+ +D ++ T E W ++ ++K +
Sbjct: 1411 AKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYV 1470
Query: 164 REVAWIIFDEVHYMRDRERGVVWEESIVMSPK--------NSRFVFLSATVPNAKEFADW 215
++V+ I DE+H + + V+ E IV + R V LS ++ NAK+ +W
Sbjct: 1471 QQVSLFIVDELHLIGGQHGPVL--EVIVSRMRYISSQVINKIRIVALSTSLANAKDLGEW 1528
Query: 216 VAKVHQQPCHIVYT---DYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNALVP 272
+ H ++ RP PL+ +I G D SF+ + A+
Sbjct: 1529 IGA----SSHGLFNFPPGVRPVPLEIHI--QGVD-------------ISSFEARMQAMTK 1569
Query: 273 PSEGDRKKDNGKFHKGLMLGKVGEESDIFKIVKMIIQ--RQYDPVILFSFSKRECEFLAM 330
P+ I+Q + P I+F +++ A+
Sbjct: 1570 PT-----------------------------YTAIVQHAKNKKPAIVFVPTRKHVRLTAV 1600
Query: 331 QMAKMDLNGDDEKDNIEKIFWSAMDMLSDDDKKLPQVSNMLPLLKR------------GI 378
+ + +S MD D L ++ + P +++ GI
Sbjct: 1601 DL----------------MAYSHMDNPQSPDFLLGKLEELDPFVEQIREETLKETLCHGI 1644
Query: 379 GVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWI 438
G H GL + +E++ LF+ G I+ + + G + A VV + +DG R
Sbjct: 1645 GYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQYYDG---REN 1701
Query: 439 TSGEY-----IQMSGRAGRRGIDERGICILM 464
+ +Y +QM GRA R +D G C++
Sbjct: 1702 SHSDYPVPDLLQMMGRASRPLLDNAGKCVIF 1732
>AT1G20960.1 | Symbols: emb1507 | U5 small nuclear ribonucleoprotein
helicase, putative | chr1:7302591-7309914 REVERSE
LENGTH=2171
Length = 2171
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 113/453 (24%), Positives = 199/453 (43%), Gaps = 89/453 (19%)
Query: 50 TEPAKKFPFTLDPFQSQAI-TCIENGESVMVSAHTSAGKTVVALYAIAMSLR-----DGQ 103
+PA K L+ QS+ T + E++++ A T AGKT VA+ I L DG
Sbjct: 495 AQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGT 554
Query: 104 ------RVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNAS--------CLVMTT 149
+++Y +P+KAL + D G++ +++ D + + +V T
Sbjct: 555 YNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIVTTP 614
Query: 150 EIWRSMQYKGSE--ITREVAWIIFDEVHYMRDRERGVVWEE-------SIVMSPKNSRFV 200
E W + K + T+ V +I DE+H + D RG V E I + +N R V
Sbjct: 615 EKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDN-RGPVLESIVARTLRQIETTKENIRLV 673
Query: 201 FLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFRE 260
LSAT+PN ++ A ++ ++ YRP PL Y+ + K +
Sbjct: 674 GLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQ---------YIGISVKKPLQR 724
Query: 261 DSFQKSLNALVPPSEGDRKKDNGKFHKGLMLGKVGEESDIFKIVKMIIQRQYDPVILFSF 320
FQ +N L + K +L G+ V++F
Sbjct: 725 --FQ-LMNDLC-------------YQK--VLAGAGKHQ----------------VLIFVH 750
Query: 321 SKRECEFLAMQMAKMDLNGDD-----EKDNIEK-IFWSAMDMLSDDDKKLPQVSNMLPLL 374
S++E A + + D ++D++ + + S D++ + D K ++LP
Sbjct: 751 SRKETSKTARAIRDTAMANDTLSRFLKEDSVTRDVLHSHEDIVKNSDLK-----DILPY- 804
Query: 375 KRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDK 434
G +HH+GL +E++E LF +G ++ L +T T + G+N+PA TV+ + ++ +K
Sbjct: 805 --GFAIHHAGLSRGDREIVETLFSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEK 862
Query: 435 FRW--ITSGEYIQMSGRAGRRGIDERGICILMV 465
W ++ + +QM GRAGR D+ G I++
Sbjct: 863 GAWMELSPLDVMQMLGRAGRPQYDQHGEGIIIT 895
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 190/451 (42%), Gaps = 115/451 (25%)
Query: 60 LDPFQSQAITCIEN-GESVMVSAHTSAGKTVVALYAIAMSLRDG----QRVIYTSPIKAL 114
+P Q+Q T + N ++V+V+A T +GKT+ A +AI + +G RV+Y +P++A+
Sbjct: 1351 FNPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILRNHHEGPDATMRVVYIAPLEAI 1410
Query: 115 SNQKYREFKEEFS-DVGL----MTGDVTID----PNASCLVMTTEIWRSM--QYKGSEIT 163
+ +++R ++ +F +GL +TG+ +D ++ T E W ++ ++K +
Sbjct: 1411 AKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYV 1470
Query: 164 REVAWIIFDEVHYMRDRERGVVWEESIVMSPK--------NSRFVFLSATVPNAKEFADW 215
++V+ I DE+H + + V+ E IV + R V LS ++ NAK+ +W
Sbjct: 1471 QQVSLFIVDELHLIGGQHGPVL--EVIVSRMRYISSQVINKIRIVALSTSLANAKDLGEW 1528
Query: 216 VAKVHQQPCHIVYT---DYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNALVP 272
+ H ++ RP PL+ +I G D SF+ + A+
Sbjct: 1529 IGA----SSHGLFNFPPGVRPVPLEIHI--QGVD-------------ISSFEARMQAMTK 1569
Query: 273 PSEGDRKKDNGKFHKGLMLGKVGEESDIFKIVKMIIQ--RQYDPVILFSFSKRECEFLAM 330
P+ I+Q + P I+F +++ A+
Sbjct: 1570 PT-----------------------------YTAIVQHAKNKKPAIVFVPTRKHVRLTAV 1600
Query: 331 QMAKMDLNGDDEKDNIEKIFWSAMDMLSDDDKKLPQVSNMLPLLKR------------GI 378
+ + +S MD D L ++ + P +++ GI
Sbjct: 1601 DL----------------MAYSHMDNPQSPDFLLGKLEELDPFVEQIREETLKETLCHGI 1644
Query: 379 GVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWI 438
G H GL + +E++ LF+ G I+ + + G + A VV + +DG R
Sbjct: 1645 GYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQYYDG---REN 1701
Query: 439 TSGEY-----IQMSGRAGRRGIDERGICILM 464
+ +Y +QM GRA R +D G C++
Sbjct: 1702 SHSDYPVPDLLQMMGRASRPLLDNAGKCVIF 1732
>AT2G42270.1 | Symbols: | U5 small nuclear ribonucleoprotein
helicase | chr2:17604330-17610848 FORWARD LENGTH=2172
Length = 2172
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 110/455 (24%), Positives = 196/455 (43%), Gaps = 93/455 (20%)
Query: 50 TEPAKKFPFTLDPFQSQAI-TCIENGESVMVSAHTSAGKTVVA----LYAIAMSLRDG-- 102
+PA + L+ QS+ T + +++++ A T AGKT VA L+ + +++ G
Sbjct: 496 AQPAFRGMQQLNRVQSKVYGTALFKADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGT 555
Query: 103 -----QRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNAS--------CLVMTT 149
+++Y +P+KAL + + D G+ +++ D + + +V T
Sbjct: 556 FNHGNYKIVYVAPMKALVAEVVDSLSQRLKDFGVTVKELSGDQSLTGQEIKETQIIVTTP 615
Query: 150 EIWRSMQYKGSE--ITREVAWIIFDEVHYMRDRERGVVWEE-------SIVMSPKNSRFV 200
E W + K + T+ V +I DE+H + D RG V E I + ++ R V
Sbjct: 616 EKWDIITRKSGDRTYTQLVRLLIIDEIHLLDD-NRGPVLESIVARTLRQIESTKEHIRLV 674
Query: 201 FLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFRE 260
LSAT+PN + A ++ + I YRP PL Y+ ++ K R
Sbjct: 675 GLSATLPNCDDVASFLRVDLKNGLFIFDRSYRPVPLGQQ---------YIGINVKKPLRR 725
Query: 261 DSFQKSLNALVPPSEGDRKKDNGKFHKGLMLGKVGEESDIF--KIVKMIIQRQYDPVILF 318
FQ LM +DI K+V + + Q V++F
Sbjct: 726 --FQ------------------------LM-------NDICYQKVVAVAGKHQ---VLIF 749
Query: 319 SFSKRECEFLAMQMAKMDLNGDD------EKDNIEKIFWSAMDMLSDDDKKLPQVSNMLP 372
S++E A + + D E +I +L ++D K
Sbjct: 750 VHSRKETAKTARAIRDTAMANDTLSRFLKEDSQSREILKCLAGLLKNNDLK--------E 801
Query: 373 LLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 432
LL G +HH+GL +E++E F+ G ++ L +T T + G+N+PA TV+ + ++
Sbjct: 802 LLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQVYNP 861
Query: 433 DKFRW--ITSGEYIQMSGRAGRRGIDERGICILMV 465
++ W ++ + +QM GRAGR D++G I++
Sbjct: 862 ERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIIT 896
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 103/450 (22%), Positives = 191/450 (42%), Gaps = 113/450 (25%)
Query: 60 LDPFQSQAITCIEN-GESVMVSAHTSAGKTVVALYAIAMSLRDG----QRVIYTSPIKAL 114
+P Q+Q T + N ++V+V+A T +GKT+ A +AI + +G RV+Y +P++A+
Sbjct: 1352 FNPVQTQVFTVLYNTSDNVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRVVYIAPLEAI 1411
Query: 115 SNQKYREFKEEFS-DVGL----MTGDVTID----PNASCLVMTTEIWRSM--QYKGSEIT 163
+ +++R+++++F +GL +TG+ +D ++ T E W ++ ++K +
Sbjct: 1412 AKEQFRDWEKKFGKGLGLRVVELTGETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYI 1471
Query: 164 REVAWIIFDEVHYMRDRERGVVWEESIVMSPK--------NSRFVFLSATVPNAKEFADW 215
++V+ I DE+H + + V+ E IV + R V LS ++ NAK+ +W
Sbjct: 1472 QQVSLFIVDELHLIGGQGGQVL--EVIVSRMRYISSQVGNKIRIVALSTSLANAKDLGEW 1529
Query: 216 VAKVHQQPCHIVY--TDYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNALVPP 273
+ C + + RP PL+ +I G D L SF+ + A+ P
Sbjct: 1530 IGA---SSCGVFNFPPNVRPVPLEIHI--HGVDIL-------------SFEARMQAMTKP 1571
Query: 274 SEGDRKKDNGKFHKGLMLGKVGEESDIFKIVKMIIQ--RQYDPVILFSFSKRECEFLAMQ 331
+ I+Q + P I+F +++ A+
Sbjct: 1572 T-----------------------------YTAIVQHAKNKKPAIVFVPTRKHVRLTAVD 1602
Query: 332 MAKMDLNGDDEKDNIEKIFWSAMDMLSDDDKKLPQVSNMLPL------------LKRGIG 379
+ I +S MD + D L + + P L+ GIG
Sbjct: 1603 L----------------IAYSHMDNMKSPDFLLGNLEELEPFLIQICEETLKETLRHGIG 1646
Query: 380 VHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWIT 439
H GL + +E++ LF+ G I+ + + G + A VV +DG R +
Sbjct: 1647 YLHEGLSNLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLKAHLVVVMGTHFYDG---RENS 1703
Query: 440 SGEY-----IQMSGRAGRRGIDERGICILM 464
+Y +QM GR R +D+ G C++
Sbjct: 1704 HSDYPISNLLQMMGRGSRPLLDDAGKCVIF 1733
>AT3G27730.1 | Symbols: RCK, MER3 | ATP binding;ATP-dependent
helicases;DNA helicases | chr3:10273952-10280213 REVERSE
LENGTH=1133
Length = 1133
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 370 MLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRK 429
M + +G+G H+ GL + ++E LF G I+ + T T + G+N+PA TVV + +
Sbjct: 329 MQSYILQGVGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPAHTVVIKSTQH 388
Query: 430 FDGDKFRWITSGEY-----IQMSGRAGRRGIDERGICILMV 465
F+ +K ++ EY +QMSGRAGR D+ G+ I+M
Sbjct: 389 FNKEKGHYM---EYDRSTLLQMSGRAGRPPFDDTGMVIIMT 426
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 100/212 (47%), Gaps = 42/212 (19%)
Query: 70 CIENGESVMVSAHTSAGKTVV------ALYAIAMS-------LRDGQRVIYTSPIKALSN 116
C + ++++SA T +GKTV+ L++ ++S + + +Y SP KAL
Sbjct: 36 CFHSDINMIISAPTGSGKTVLFELCILRLFSKSISKEGSFLHAKGALKTVYISPSKALVQ 95
Query: 117 QKYREFKEEFSDVGLMTGDVTID---------PNASCLVMTTEIWRSM-QYK----GSEI 162
+K R++ ++F+ G+ ++T D +A ++ T E + ++ +Y+ G
Sbjct: 96 EKLRDWNQKFNSWGISCLELTGDNETYSTKNIQDADIILTTPEKFDAVSRYRVTSGGLGF 155
Query: 163 TREVAWIIFDEVHYMRDRERGVVWEESI----VMSPKNS---------RFVFLSATVPNA 209
++A ++ DEVH + D RG E + ++S + R + +SAT+PN
Sbjct: 156 FSDIALVLIDEVHLLND-PRGAALEAIVSRLKILSSNHELRSSTLASVRLLAVSATIPNI 214
Query: 210 KEFADWVAKVHQQPCHIVYTDYRPTPLQHYIF 241
++ A+W+ KV + RP L +F
Sbjct: 215 EDLAEWL-KVPTAGIKRFGEEMRPVKLTTKVF 245