Miyakogusa Predicted Gene

Lj1g3v3329000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3329000.1 Non Chatacterized Hit- tr|Q2JNV7|Q2JNV7_SYNJB
Putative membrane protein OS=Synechococcus sp.
(strain,32.54,1e-16,UNCHARACTERIZED,NULL; SNARE_assoc,SNARE associated
Golgi protein; seg,NULL,CUFF.30361.1
         (238 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G44960.1 | Symbols:  | SNARE associated Golgi protein family ...   298   2e-81
AT1G22850.1 | Symbols:  | SNARE associated Golgi protein family ...    51   6e-07

>AT1G44960.1 | Symbols:  | SNARE associated Golgi protein family |
           chr1:16999576-17001447 FORWARD LENGTH=261
          Length = 261

 Score =  298 bits (763), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 136/217 (62%), Positives = 172/217 (79%)

Query: 20  RTWNSNGSWDKEAALKWMSEWSERLGVWAIPLFISLHTLSIALCLPSAIFLETGASILFG 79
           R   +   W+KEAAL+ + EWS+RLG+WAIP ++++HT+++ALCLP A+F E GAS+LFG
Sbjct: 19  RQGTTQYGWNKEAALEKLKEWSDRLGIWAIPTYVAVHTITLALCLPHAVFFEAGASMLFG 78

Query: 80  FFPSVLCVFSAKILAASLSFWIGRLVFRNSTSAMDWARRNKYFILLSKGVERDGWKFVLL 139
           F P++LCVFSAK+LAAS SFWIGR VF++ST A  WA  NKYF +LS+GVERDGWKFVLL
Sbjct: 79  FLPALLCVFSAKVLAASFSFWIGRFVFKSSTRATGWAHSNKYFNILSRGVERDGWKFVLL 138

Query: 140 ARFSPVPSYIINYTLAATEVGFVLDFLLPTIIGCVPMILQNTSIGSLAGAAYATASGSKK 199
           ARFSP+PSY+INY LAATEV FV DFL PT+IGC+PMILQN S+GSLAG A A+ +G +K
Sbjct: 139 ARFSPIPSYVINYALAATEVRFVADFLFPTVIGCLPMILQNASVGSLAGMAVASVAGKQK 198

Query: 200 SQIWSYVFPMVGXXXXXXXXXRIKKYSTQVSLDKSNT 236
           SQ+W YVFP++G         RIKKYS  ++   S+T
Sbjct: 199 SQVWGYVFPVLGILSSVLISLRIKKYSAGITEASSDT 235


>AT1G22850.1 | Symbols:  | SNARE associated Golgi protein family |
           chr1:8080671-8082816 REVERSE LENGTH=344
          Length = 344

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 34  LKWMSEWSERLGVWAIPLFISLHTLSIALCLPSAIFLETGASILFGFFPSVLCVFSAKIL 93
           L   S + E  G     LFI+++     L +P A+ L   A +LFG     + V  +  +
Sbjct: 138 LTQFSTYIEGYGTAGYALFIAVYAGLEILAIP-ALPLTMSAGLLFGPLIGTIIVSISGTM 196

Query: 94  AASLSFWIGRLVFRNSTSAMDWARRNKYFILLSKGVERDGWKFVLLARFSP-VPSYIINY 152
           AAS++F I R   R     +     NK F+ + K +  +G++ V L R SP +P  + NY
Sbjct: 197 AASVAFLIARYFARERI--LKLVEDNKKFLAIDKAIGENGFRVVTLLRLSPLLPFSLGNY 254

Query: 153 TLAATEVGFVLDFLLPTIIGCVP 175
               T V FV  ++L + +G +P
Sbjct: 255 LYGLTSVKFV-PYVLGSWLGMLP 276