Miyakogusa Predicted Gene

Lj1g3v3328730.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3328730.1 tr|D7DVX0|D7DVX0_NOSA0 Probable 30S ribosomal
protein PSRP-3 OS=Nostoc azollae (strain 0708)
GN=Aazo,53.16,2e-19,PSRP-3_Ycf65,Ribosomal protein PSRP-3/Ycf65;
RRP3_SPIOL_P82412;,Ribosomal protein PSRP-3/Ycf65; seg,,CUFF.30431.1
         (175 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68590.1 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 | chr1:...   170   5e-43
AT1G68590.2 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 | chr1:...   166   5e-42
AT5G15760.1 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 | chr5:...   155   2e-38

>AT1G68590.1 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 |
           chr1:25757593-25758169 REVERSE LENGTH=166
          Length = 166

 Score =  170 bits (430), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 90/102 (88%), Gaps = 1/102 (0%)

Query: 74  DTSLSPPPQKLGVVVKPTDKPRLVLKFIWMEKNIGIALDQAVPGHGTIPLSPYYFWPRKD 133
           DTS + P Q + VV KP +K R+VLKF+WMEKNIG+ LDQ VPGHGTIPLSPY+FWPRKD
Sbjct: 64  DTSDNTPQQTIKVV-KPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKD 122

Query: 134 AWEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGNLS 175
           AWEELK  LE+KPWISQK+MIILLNQATDIINLWQQSGGNL+
Sbjct: 123 AWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNLT 164


>AT1G68590.2 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 |
           chr1:25757593-25758169 REVERSE LENGTH=163
          Length = 163

 Score =  166 bits (421), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 88/102 (86%), Gaps = 4/102 (3%)

Query: 74  DTSLSPPPQKLGVVVKPTDKPRLVLKFIWMEKNIGIALDQAVPGHGTIPLSPYYFWPRKD 133
           DTS + P Q     +KP +K R+VLKF+WMEKNIG+ LDQ VPGHGTIPLSPY+FWPRKD
Sbjct: 64  DTSDNTPQQ----TIKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKD 119

Query: 134 AWEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGNLS 175
           AWEELK  LE+KPWISQK+MIILLNQATDIINLWQQSGGNL+
Sbjct: 120 AWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNLT 161


>AT5G15760.1 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 |
           chr5:5143100-5143905 FORWARD LENGTH=183
          Length = 183

 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 87/102 (85%), Gaps = 2/102 (1%)

Query: 76  SLSPP--PQKLGVVVKPTDKPRLVLKFIWMEKNIGIALDQAVPGHGTIPLSPYYFWPRKD 133
           S SPP   +K+ V+VKP +KP++VLKF+WM+K+IG+ALD  +PG GTIPLSPYYFWPRKD
Sbjct: 82  SESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKD 141

Query: 134 AWEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGNLS 175
           AWEELK LLESKPWIS+   + LLNQATDIINLWQ SGG+LS
Sbjct: 142 AWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183