Miyakogusa Predicted Gene

Lj1g3v3328720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3328720.1 tr|I0J3L1|I0J3L1_9EUGL Probable 30S ribosomal
protein PSRP-3 OS=Eutreptiella gymnastica GN=ycf65
PE=,56.58,2e-19,PSRP-3_Ycf65,Ribosomal protein PSRP-3/Ycf65;
RRP3_SPIOL_P82412;,Ribosomal protein PSRP-3/Ycf65,CUFF.30430.1
         (99 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68590.1 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 | chr1:...   166   3e-42
AT1G68590.2 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 | chr1:...   164   1e-41
AT5G15760.1 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 | chr5:...   154   2e-38

>AT1G68590.1 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 |
           chr1:25757593-25758169 REVERSE LENGTH=166
          Length = 166

 Score =  166 bits (420), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 75/89 (84%), Positives = 83/89 (93%)

Query: 11  VVKPTDKPRLVLKFIWMEKNIGIALDQAVPGHGTIPLSPYYFWPRKDAWEELKELLESKP 70
           VVKP +K R+VLKF+WMEKNIG+ LDQ VPGHGTIPLSPY+FWPRKDAWEELK  LE+KP
Sbjct: 76  VVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKP 135

Query: 71  WISQKQMIILLNQATDIINLWQQSGGNLS 99
           WISQK+MIILLNQATDIINLWQQSGGNL+
Sbjct: 136 WISQKKMIILLNQATDIINLWQQSGGNLT 164


>AT1G68590.2 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 |
           chr1:25757593-25758169 REVERSE LENGTH=163
          Length = 163

 Score =  164 bits (414), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 73/89 (82%), Positives = 82/89 (92%)

Query: 11  VVKPTDKPRLVLKFIWMEKNIGIALDQAVPGHGTIPLSPYYFWPRKDAWEELKELLESKP 70
            +KP +K R+VLKF+WMEKNIG+ LDQ VPGHGTIPLSPY+FWPRKDAWEELK  LE+KP
Sbjct: 73  TIKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKP 132

Query: 71  WISQKQMIILLNQATDIINLWQQSGGNLS 99
           WISQK+MIILLNQATDIINLWQQSGGNL+
Sbjct: 133 WISQKKMIILLNQATDIINLWQQSGGNLT 161


>AT5G15760.1 | Symbols:  | Ribosomal protein PSRP-3/Ycf65 |
           chr5:5143100-5143905 FORWARD LENGTH=183
          Length = 183

 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 69/94 (73%), Positives = 83/94 (88%)

Query: 6   QKLGVVVKPTDKPRLVLKFIWMEKNIGIALDQAVPGHGTIPLSPYYFWPRKDAWEELKEL 65
           +K+ V+VKP +KP++VLKF+WM+K+IG+ALD  +PG GTIPLSPYYFWPRKDAWEELK L
Sbjct: 90  KKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTL 149

Query: 66  LESKPWISQKQMIILLNQATDIINLWQQSGGNLS 99
           LESKPWIS+   + LLNQATDIINLWQ SGG+LS
Sbjct: 150 LESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183