Miyakogusa Predicted Gene
- Lj1g3v3328650.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3328650.1 Non Chatacterized Hit- tr|I3SBD5|I3SBD5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.67,0,Ubiquitin
homologues,Ubiquitin; Ubiquitin associated
domain,Ubiquitin-associated/translation elongat,CUFF.30344.1
(376 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G38470.1 | Symbols: RAD23D | Rad23 UV excision repair protein... 432 e-121
AT1G16190.1 | Symbols: RAD23A | Rad23 UV excision repair protein... 362 e-100
AT1G79650.1 | Symbols: RAD23, RAD23B | Rad23 UV excision repair ... 358 3e-99
AT1G79650.2 | Symbols: RAD23, RAD23B | Rad23 UV excision repair ... 357 8e-99
AT3G02540.1 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repai... 346 1e-95
AT3G02540.3 | Symbols: RAD23C | Rad23 UV excision repair protein... 345 3e-95
AT1G79650.4 | Symbols: RAD23B | Rad23 UV excision repair protein... 344 6e-95
AT5G38470.2 | Symbols: RAD23D | Rad23 UV excision repair protein... 341 4e-94
AT1G79650.3 | Symbols: RAD23, RAD23B | Rad23 UV excision repair ... 313 8e-86
AT3G02540.2 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repai... 183 2e-46
AT5G16090.1 | Symbols: | INVOLVED IN: nucleotide-excision repai... 87 2e-17
>AT5G38470.1 | Symbols: RAD23D | Rad23 UV excision repair protein
family | chr5:15404720-15407500 FORWARD LENGTH=378
Length = 378
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/404 (59%), Positives = 280/404 (69%), Gaps = 55/404 (13%)
Query: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
MKI VKTL G++F+I+V D V+DVK IE +GA YPAA+QMLIHQGKVLKD+TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENNVAEDSFVVIMLSKNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQ 120
ENNV E+SF+VIMLSK K
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASAPAPSATQ------------------------ 95
Query: 121 GASNSEQSPVITPPTAAV--------------------SSVYGQAASNLIAGSNVDPTVQ 160
+ +P ++ PTA+V + VYGQAASNL+AG+ ++ TVQ
Sbjct: 96 --PQTVATPQVSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQ 153
Query: 161 QILEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQADVPAVARSPSVG-QAENP- 218
QIL+MGGGSWDRDTV+RALRAA+NNPERAVEYLYSGIP QA++P VA++P+ G QA NP
Sbjct: 154 QILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPL 213
Query: 219 --SVQPPQPAVPTGGPNTNPLNLFPQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQANP 276
Q PA TGGPN NPLNLFPQG+P A AG+LDFLRN+QQFQALRAMVQANP
Sbjct: 214 AQPQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANP 273
Query: 277 QILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEP-EGEEN---PLAAGMTQAITVTPEE 332
QILQPMLQELGKQNP L++LIQEHQ+DFL LINEP EGEEN L A M QA+TVTPEE
Sbjct: 274 QILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEENVMEQLEAAMPQAVTVTPEE 333
Query: 333 NEAIQRLEDMGFDRDLVLEVFIACNRNEDLAANYLLDHQNEFDD 376
EAI+RLE MGFDR +VLEVF ACN+NE+LAANYLLDH +EF+D
Sbjct: 334 REAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
>AT1G16190.1 | Symbols: RAD23A | Rad23 UV excision repair protein
family | chr1:5543267-5545892 FORWARD LENGTH=368
Length = 368
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 196/383 (51%), Positives = 251/383 (65%), Gaps = 22/383 (5%)
Query: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
MK+ VKTLKG+HF+I+V D++ VKK IE +Q YP QQ+LIH GKVLKD+TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENNVAEDSFVVIMLSKNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQ 120
EN V E+ F+V+MLSK+K
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVP----- 115
Query: 121 GASNSEQSPVITPPTAAVSSVYGQAASNLIAGSNVDPTVQQILEMGGGSWDRDTVIRALR 180
ASNS +PV PTA S YGQAAS L++GS+++ VQQI+EMGGGSWD++TV RALR
Sbjct: 116 -ASNS--TPVQEQPTAQ-SDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALR 171
Query: 181 AAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSVQPPQPAVPTGGPNTNPLNLF 240
AAYNNPERAV+YLYSGIPE +PA S VG + PP +GGPN++PL+LF
Sbjct: 172 AAYNNPERAVDYLYSGIPETVTIPATNLS-GVGSGRELTAPPP-----SGGPNSSPLDLF 225
Query: 241 PQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEH 300
PQ + A + G L+FLR N QFQ LR+MV +NPQILQPMLQELGKQNP L++LIQE+
Sbjct: 226 PQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQEN 285
Query: 301 QSDFLNLINEP-EGEENPLAA------GMTQAITVTPEENEAIQRLEDMGFDRDLVLEVF 353
Q++FL L+NEP EG + + M ++ VTPEE E+I+RLE MGFDR +V+E F
Sbjct: 286 QAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAF 345
Query: 354 IACNRNEDLAANYLLDHQNEFDD 376
++C+RNE+LAANYLL+H +F+D
Sbjct: 346 LSCDRNEELAANYLLEHSADFED 368
>AT1G79650.1 | Symbols: RAD23, RAD23B | Rad23 UV excision repair
protein family | chr1:29972406-29975132 REVERSE
LENGTH=371
Length = 371
Score = 358 bits (919), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 196/389 (50%), Positives = 247/389 (63%), Gaps = 31/389 (7%)
Query: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
MK+ VKTLKG+HF+I+V D++ VKK IE +QG YP QQ+LIH GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENNVAEDSFVVIMLSKNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQ 120
EN V E+ F+V+MLSK+K
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPA------------- 107
Query: 121 GASNSEQSPVITPPT------AAVSSVYGQAASNLIAGSNVDPTVQQILEMGGGSWDRDT 174
S ++ SPV P AA + YGQAAS L++GS+++ VQQI+EMGGGSWD++T
Sbjct: 108 APSTTQSSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKET 167
Query: 175 VIRALRAAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSVQPPQPAVPTGGPNT 234
V RALRAAYNNPERAV+YLYSGIP+ A+V A Q P PA +GGPN+
Sbjct: 168 VTRALRAAYNNPERAVDYLYSGIPQTAEV---AVPVPEAQIAGSGAAPVAPA--SGGPNS 222
Query: 235 NPLNLFPQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQANPQILQPMLQELGKQNPHLM 294
+PL+LFPQ + G L+FLRNN QFQ LR MV +NPQILQPMLQELGKQNP L+
Sbjct: 223 SPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLL 282
Query: 295 QLIQEHQSDFLNLINEP----EGEENPL---AAGMTQAITVTPEENEAIQRLEDMGFDRD 347
+LIQE+Q++FL L+NEP +GE + M AI VTP E EAIQRLE MGFDR
Sbjct: 283 RLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRA 342
Query: 348 LVLEVFIACNRNEDLAANYLLDHQNEFDD 376
LV+E F+AC+RNE+LAANYLL++ +F+D
Sbjct: 343 LVIEAFLACDRNEELAANYLLENSGDFED 371
>AT1G79650.2 | Symbols: RAD23, RAD23B | Rad23 UV excision repair
protein family | chr1:29972406-29975132 REVERSE
LENGTH=365
Length = 365
Score = 357 bits (916), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 196/389 (50%), Positives = 247/389 (63%), Gaps = 37/389 (9%)
Query: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
MK+ VKTLKG+HF+I+V D++ VKK IE +QG YP QQ+LIH GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENNVAEDSFVVIMLSKNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQ 120
EN V E+ F+V+MLSK+K
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQPVSATTSSTKPA------------------- 101
Query: 121 GASNSEQSPVITPPT------AAVSSVYGQAASNLIAGSNVDPTVQQILEMGGGSWDRDT 174
S ++ SPV P AA + YGQAAS L++GS+++ VQQI+EMGGGSWD++T
Sbjct: 102 APSTTQSSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKET 161
Query: 175 VIRALRAAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSVQPPQPAVPTGGPNT 234
V RALRAAYNNPERAV+YLYSGIP+ A+V A Q P PA +GGPN+
Sbjct: 162 VTRALRAAYNNPERAVDYLYSGIPQTAEV---AVPVPEAQIAGSGAAPVAPA--SGGPNS 216
Query: 235 NPLNLFPQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQANPQILQPMLQELGKQNPHLM 294
+PL+LFPQ + G L+FLRNN QFQ LR MV +NPQILQPMLQELGKQNP L+
Sbjct: 217 SPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLL 276
Query: 295 QLIQEHQSDFLNLINEP----EGEENPL---AAGMTQAITVTPEENEAIQRLEDMGFDRD 347
+LIQE+Q++FL L+NEP +GE + M AI VTP E EAIQRLE MGFDR
Sbjct: 277 RLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRA 336
Query: 348 LVLEVFIACNRNEDLAANYLLDHQNEFDD 376
LV+E F+AC+RNE+LAANYLL++ +F+D
Sbjct: 337 LVIEAFLACDRNEELAANYLLENSGDFED 365
>AT3G02540.1 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repair
protein family | chr3:533095-536151 REVERSE LENGTH=419
Length = 419
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 177/254 (69%), Positives = 204/254 (80%), Gaps = 11/254 (4%)
Query: 134 PTAAVSSVYGQAASNLIAGSNVDPTVQQILEMGGGSWDRDTVIRALRAAYNNPERAVEYL 193
P + VYGQAASNL AGSN++ T+QQIL+MGGG+WDR+TV+ ALRAA+NNPERAVEYL
Sbjct: 166 PVGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYL 225
Query: 194 YSGIPEQADVPAVARSP-SVGQAENPSVQPPQPAV-PTGGPNTNPLNLFPQGIPNMGAED 251
Y+GIPEQA+VP VAR P S GQ NP Q QPA P GPN NPL+LFPQG+PN+G
Sbjct: 226 YTGIPEQAEVPPVARPPASAGQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNP 285
Query: 252 NAGDLDFLRNNQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEP 311
AG LDFLRN+QQFQALRAMVQANPQ+LQPMLQELGKQNP+LM+LIQ+HQ+DFL LINEP
Sbjct: 286 GAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEP 345
Query: 312 ---EGEENPL----AAGM--TQAITVTPEENEAIQRLEDMGFDRDLVLEVFIACNRNEDL 362
GE L AAGM QAI VT EE EAI+RLE MGF+R LVLEVF ACN+NE+L
Sbjct: 346 VEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEEL 405
Query: 363 AANYLLDHQNEFDD 376
AANYLLDH +EF++
Sbjct: 406 AANYLLDHMHEFEE 419
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 69/78 (88%)
Query: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
MKI VKTLKGTHF+I+V +DSV DVKK IE QGA VYPAA+QMLIHQGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENNVAEDSFVVIMLSKNK 78
EN VAE+SF+VIM++K+K
Sbjct: 61 ENKVAENSFIVIMMNKSK 78
>AT3G02540.3 | Symbols: RAD23C | Rad23 UV excision repair protein
family | chr3:533095-536151 REVERSE LENGTH=418
Length = 418
Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 176/247 (71%), Positives = 202/247 (81%), Gaps = 11/247 (4%)
Query: 141 VYGQAASNLIAGSNVDPTVQQILEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQ 200
VYGQAASNL AGSN++ T+QQIL+MGGG+WDR+TV+ ALRAA+NNPERAVEYLY+GIPEQ
Sbjct: 172 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQ 231
Query: 201 ADVPAVARSP-SVGQAENPSVQPPQPAV-PTGGPNTNPLNLFPQGIPNMGAEDNAGDLDF 258
A+VP VAR P S GQ NP Q QPA P GPN NPL+LFPQG+PN+G AG LDF
Sbjct: 232 AEVPPVARPPASAGQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNPGAGTLDF 291
Query: 259 LRNNQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEP---EGEE 315
LRN+QQFQALRAMVQANPQ+LQPMLQELGKQNP+LM+LIQ+HQ+DFL LINEP GE
Sbjct: 292 LRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGES 351
Query: 316 NPL----AAGM--TQAITVTPEENEAIQRLEDMGFDRDLVLEVFIACNRNEDLAANYLLD 369
L AAGM QAI VT EE EAI+RLE MGF+R LVLEVF ACN+NE+LAANYLLD
Sbjct: 352 GNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLD 411
Query: 370 HQNEFDD 376
H +EF++
Sbjct: 412 HMHEFEE 418
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 69/78 (88%)
Query: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
MKI VKTLKGTHF+I+V +DSV DVKK IE QGA VYPAA+QMLIHQGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENNVAEDSFVVIMLSKNK 78
EN VAE+SF+VIM++K+K
Sbjct: 61 ENKVAENSFIVIMMNKSK 78
>AT1G79650.4 | Symbols: RAD23B | Rad23 UV excision repair protein
family | chr1:29972406-29975132 REVERSE LENGTH=395
Length = 395
Score = 344 bits (882), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 193/400 (48%), Positives = 244/400 (61%), Gaps = 29/400 (7%)
Query: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
MK+ VKTLKG+HF+I+V D++ VKK IE +QG YP QQ+LIH GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENNVAEDSFVVIMLSKNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQ 120
EN V E+ F+V+MLSK+K
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPAS 120
Query: 121 GASNSEQ----SPVITPPTAAVSSVYG-------------QAASNLIAGSNVDPTVQQIL 163
EQ + V + A +YG QAAS L++GS+++ VQQI+
Sbjct: 121 PIPAQEQPAVYAFVFSFAGLAFCPLYGFPKVSMAQTDTYGQAASTLVSGSSLEQMVQQIM 180
Query: 164 EMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSVQPP 223
EMGGGSWD++TV RALRAAYNNPERAV+YLYSGIP+ A+ VA Q P
Sbjct: 181 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAE---VAVPVPEAQIAGSGAAPV 237
Query: 224 QPAVPTGGPNTNPLNLFPQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQANPQILQPML 283
PA +GGPN++PL+LFPQ + G L+FLRNN QFQ LR MV +NPQILQPML
Sbjct: 238 APA--SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPML 295
Query: 284 QELGKQNPHLMQLIQEHQSDFLNLINEP----EGEENPL---AAGMTQAITVTPEENEAI 336
QELGKQNP L++LIQE+Q++FL L+NEP +GE + M AI VTP E EAI
Sbjct: 296 QELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAI 355
Query: 337 QRLEDMGFDRDLVLEVFIACNRNEDLAANYLLDHQNEFDD 376
QRLE MGFDR LV+E F+AC+RNE+LAANYLL++ +F+D
Sbjct: 356 QRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 395
>AT5G38470.2 | Symbols: RAD23D | Rad23 UV excision repair protein
family | chr5:15404720-15407251 FORWARD LENGTH=332
Length = 332
Score = 341 bits (875), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 194/340 (57%), Positives = 227/340 (66%), Gaps = 52/340 (15%)
Query: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
MKI VKTL G++F+I+V D V+DVK IE +GA YPAA+QMLIHQGKVLKD+TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENNVAEDSFVVIMLSKNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQ 120
ENNV E+SF+VIMLSK K
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVA------------------- 100
Query: 121 GASNSEQSPVITPPTAAV--------------------SSVYGQAASNLIAGSNVDPTVQ 160
+P ++ PTA+V + VYGQAASNL+AG+ ++ TVQ
Sbjct: 101 -------TPQVSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQ 153
Query: 161 QILEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQADVPAVARSPSVG-QAENP- 218
QIL+MGGGSWDRDTV+RALRAA+NNPERAVEYLYSGIP QA++P VA++P+ G QA NP
Sbjct: 154 QILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPL 213
Query: 219 --SVQPPQPAVPTGGPNTNPLNLFPQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQANP 276
Q PA TGGPN NPLNLFPQG+P A AG+LDFLRN+QQFQALRAMVQANP
Sbjct: 214 AQPQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANP 273
Query: 277 QILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEP-EGEE 315
QILQPMLQELGKQNP L++LIQEHQ+DFL LINEP EGEE
Sbjct: 274 QILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEE 313
>AT1G79650.3 | Symbols: RAD23, RAD23B | Rad23 UV excision repair
protein family | chr1:29972406-29975132 REVERSE
LENGTH=351
Length = 351
Score = 313 bits (803), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 180/389 (46%), Positives = 230/389 (59%), Gaps = 51/389 (13%)
Query: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
MK+ VKTLKG+HF+I+V D++ VKK IE +QG YP QQ+LIH GKVLKD+T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENNVAEDSFVVIMLSKNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQ 120
EN V E+ F+V+MLSK+K
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPA------------- 107
Query: 121 GASNSEQSPVITPPT------AAVSSVYGQAASNLIAGSNVDPTVQQILEMGGGSWDRDT 174
S ++ SPV P AA + YGQAAS L++GS+++ VQQI+EMGGGSWD++T
Sbjct: 108 APSTTQSSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKET 167
Query: 175 VIRALRAAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSVQPPQPAVPTGGPNT 234
V RALRAAYNNPERAV+YLYSGIP+ A+ VA Q P PA +GGPN+
Sbjct: 168 VTRALRAAYNNPERAVDYLYSGIPQTAE---VAVPVPEAQIAGSGAAPVAPA--SGGPNS 222
Query: 235 NPLNLFPQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQANPQILQPMLQELGKQNPHLM 294
+PL+LFPQ + G L+FLRNN QELGKQNP L+
Sbjct: 223 SPLDLFPQETVAAAGSGDLGTLEFLRNND--------------------QELGKQNPQLL 262
Query: 295 QLIQEHQSDFLNLINEP----EGEENPL---AAGMTQAITVTPEENEAIQRLEDMGFDRD 347
+LIQE+Q++FL L+NEP +GE + M AI VTP E EAIQRLE MGFDR
Sbjct: 263 RLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRA 322
Query: 348 LVLEVFIACNRNEDLAANYLLDHQNEFDD 376
LV+E F+AC+RNE+LAANYLL++ +F+D
Sbjct: 323 LVIEAFLACDRNEELAANYLLENSGDFED 351
>AT3G02540.2 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repair
protein family | chr3:533906-536151 REVERSE LENGTH=299
Length = 299
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 105/133 (78%), Gaps = 2/133 (1%)
Query: 134 PTAAVSSVYGQAASNLIAGSNVDPTVQQILEMGGGSWDRDTVIRALRAAYNNPERAVEYL 193
P + VYGQAASNL AGSN++ T+QQIL+MGGG+WDR+TV+ ALRAA+NNPERAVEYL
Sbjct: 166 PVGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYL 225
Query: 194 YSGIPEQADVPAVARSP-SVGQAENPSVQPPQP-AVPTGGPNTNPLNLFPQGIPNMGAED 251
Y+GIPEQA+VP VAR P S GQ NP Q QP A P GPN NPL+LFPQG+PN+G
Sbjct: 226 YTGIPEQAEVPPVARPPASAGQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNP 285
Query: 252 NAGDLDFLRNNQQ 264
AG LDFLRN+QQ
Sbjct: 286 GAGTLDFLRNSQQ 298
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 69/78 (88%)
Query: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
MKI VKTLKGTHF+I+V +DSV DVKK IE QGA VYPAA+QMLIHQGKVLKD+TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENNVAEDSFVVIMLSKNK 78
EN VAE+SF+VIM++K+K
Sbjct: 61 ENKVAENSFIVIMMNKSK 78
>AT5G16090.1 | Symbols: | INVOLVED IN: nucleotide-excision
repair; LOCATED IN: nucleus; CONTAINS InterPro
DOMAIN/s: Ubiquitin-associated/translation elongation
factor EF1B, N-terminal, eukaryote
(InterPro:IPR015940), Ubiquitin-associated/translation
elongation factor EF1B, N-terminal
(InterPro:IPR000449), UV excision repair protein Rad23
(InterPro:IPR004806), Ubiquitin (InterPro:IPR000626),
Ubiquitin supergroup (InterPro:IPR019955), UBA-like
(InterPro:IPR009060); BEST Arabidopsis thaliana protein
match is: Rad23 UV excision repair protein family
(TAIR:AT3G02540.1); Has 1311 Blast hits to 954 proteins
in 240 species: Archae - 0; Bacteria - 0; Metazoa -
634; Fungi - 179; Plants - 321; Viruses - 27; Other
Eukaryotes - 150 (source: NCBI BLink). |
chr5:5255797-5257230 REVERSE LENGTH=171
Length = 171
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 56/76 (73%)
Query: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
MKI VKTLKG F+I+V DSVA+VKK IE GA YPAAQQ+LIH+ + L+D+TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 ENNVAEDSFVVIMLSK 76
N V + S + I+++K
Sbjct: 61 ANKVFDKSVIAIIITK 76
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%), Gaps = 5/97 (5%)
Query: 278 ILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEPEGE-ENPLA---AGMTQAITVTPEEN 333
I + L+E+ KQNP L Q+I+ + + F+ ++N+ E +N LA + Q + VT ++
Sbjct: 74 ITKGCLEEMEKQNPPLFQMIRHNSAGFVPVLNKESFERDNELAQPEEDLLQ-LQVTAVDD 132
Query: 334 EAIQRLEDMGFDRDLVLEVFIACNRNEDLAANYLLDH 370
EAI RLE MGF+R +VLEVF+ACN+NE LAAN+LLDH
Sbjct: 133 EAINRLEAMGFERRVVLEVFLACNKNEQLAANFLLDH 169