Miyakogusa Predicted Gene
- Lj1g3v3317320.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3317320.1 Non Chatacterized Hit- tr|I1J614|I1J614_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,88.23,0,OB_NTP_bind,Domain of unknown function DUF1605;
HA2,Helicase-associated domain;
Helicase_C,Helicase,,NODE_1303_length_2826_cov_42.743099.path2.1
(723 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G26370.1 | Symbols: | RNA helicase family protein | chr1:912... 984 0.0
AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |... 593 e-169
AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family prote... 581 e-166
AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein | chr1... 580 e-166
AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protei... 577 e-164
AT4G18465.1 | Symbols: | RNA helicase family protein | chr4:101... 530 e-150
AT2G47250.1 | Symbols: | RNA helicase family protein | chr2:193... 518 e-147
AT3G62310.1 | Symbols: | RNA helicase family protein | chr3:230... 515 e-146
AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein | c... 509 e-144
AT1G27900.1 | Symbols: | RNA helicase family protein | chr1:971... 440 e-123
AT4G16680.1 | Symbols: | P-loop containing nucleoside triphosph... 422 e-118
AT5G10370.1 | Symbols: | helicase domain-containing protein / I... 298 1e-80
AT4G01020.1 | Symbols: | helicase domain-containing protein / I... 286 3e-77
AT2G35920.1 | Symbols: | RNA helicase family protein | chr2:150... 276 3e-74
AT1G48650.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 250 3e-66
AT1G48650.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 249 4e-66
AT5G04895.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 214 2e-55
AT2G01130.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 187 2e-47
AT1G58060.1 | Symbols: | RNA helicase family protein | chr1:214... 177 2e-44
AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protei... 177 2e-44
AT5G14900.1 | Symbols: | helicase associated (HA2) domain-conta... 164 2e-40
AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase | chr1:204... 163 4e-40
AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissu... 162 9e-40
AT1G58050.1 | Symbols: | RNA helicase family protein | chr1:214... 161 1e-39
AT2G47680.1 | Symbols: | zinc finger (CCCH type) helicase famil... 142 7e-34
>AT1G26370.1 | Symbols: | RNA helicase family protein |
chr1:9122030-9125368 REVERSE LENGTH=717
Length = 717
Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/685 (68%), Positives = 565/685 (82%), Gaps = 3/685 (0%)
Query: 36 RQKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGKVI 95
RQK+A+ R+SLPIASVEKRLVEEV+K+DILIIVGETGSGKTTQ+PQFL++AG C +GK+I
Sbjct: 31 RQKIAEHRRSLPIASVEKRLVEEVQKNDILIIVGETGSGKTTQLPQFLYNAGFCREGKMI 90
Query: 96 GITQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREALLD 155
GITQP EEC V+LG KVGYS+RFDD TS STR+KYMTDGLLLREALLD
Sbjct: 91 GITQPRRIAAVTVAKRVAEECEVQLGQKVGYSIRFDDTTSGSTRLKYMTDGLLLREALLD 150
Query: 156 PYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLSDK 215
P+LS+YSVIIVDEAH+R+VHTDVLL LLK +Q TRS+ +S+ FGN +
Sbjct: 151 PHLSRYSVIIVDEAHDRSVHTDVLLALLKKIQRTRSQPVSEKT--EFGNVASQVQTTTRD 208
Query: 216 ENG-QSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIFYTR 274
NG Q + L+ +K+SPLKLIIMSASLDAR F EYFGGAKAVH++GRQFPVDI YT
Sbjct: 209 ANGPQQNGVLKGYQGRKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDILYTV 268
Query: 275 RAETDYLDAALITIFQIHLAEGPGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLLVA 334
E+DY+DA L+TIFQIH E PGDILVFLTGQ+EIESVE ++E+L +P++ +KLL
Sbjct: 269 HPESDYVDATLVTIFQIHFEEKPGDILVFLTGQDEIESVERLVQERLQNIPEDKRKLLPL 328
Query: 335 PIFAALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKG 394
IF+ALPSEQQ++VFAP P+G RKVILATNIAETS+TIPGI+YVIDPG VKARSYDP KG
Sbjct: 329 AIFSALPSEQQMKVFAPAPTGFRKVILATNIAETSITIPGIRYVIDPGFVKARSYDPSKG 388
Query: 395 MESLIIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEFEKLEDSTMPEIKRCNLSNVILQ 454
MESL +VP SK+Q +QRSGRAGREGPGK FRLYPE EFEKLEDST PEIKRCNLSN+ILQ
Sbjct: 389 MESLDVVPASKAQTLQRSGRAGREGPGKSFRLYPEREFEKLEDSTKPEIKRCNLSNIILQ 448
Query: 455 LKALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDPVYA 514
LKALG+DDI+GFDFI+KPSR AIIK+L +L LGAL D+ L +PVG QM+RLPL+PVY+
Sbjct: 449 LKALGIDDIVGFDFIDKPSRGAIIKALAELHSLGALADDGKLENPVGYQMSRLPLEPVYS 508
Query: 515 KALIFASQFNCLEEMLITVAMLSVESIFYVPRDMLAESRIATKCFSSPEGDHITLINVYR 574
KALI A+QFNCLEEMLITVA+LSVESIFY PR+ E+R + F+S EGDH+T ++VYR
Sbjct: 509 KALILANQFNCLEEMLITVAVLSVESIFYDPREKREEARTSKNHFASVEGDHLTYLSVYR 568
Query: 575 ASNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGLNLASC 634
S++FLEKR S +K+++KWCKEN++NSRSL+HA DI+RQI+ HV+Q+G N++SC
Sbjct: 569 ESDEFLEKRKAAGSGNNIDKIMKKWCKENYVNSRSLKHARDIYRQIREHVEQIGFNVSSC 628
Query: 635 GDDMLQFRRCLVASFFLNAAIKQPDGTYRALASGQVVQIHPSSVLFRQKPECVIFNELLQ 694
G+DML FRRCL ASFFL AA +Q DGTYRAL SG+VV IHP+SVLFR KPECVIFNEL+Q
Sbjct: 629 GNDMLAFRRCLAASFFLKAAQRQLDGTYRALESGEVVHIHPTSVLFRAKPECVIFNELMQ 688
Query: 695 TNNKYVRNLTRVDYLWLTELAPQYY 719
T+ KY++NLT +D LWL+ELAP ++
Sbjct: 689 TSKKYIKNLTIIDSLWLSELAPHHF 713
>AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |
chr3:9750122-9753719 REVERSE LENGTH=1168
Length = 1168
Score = 593 bits (1529), Expect = e-169, Method: Compositional matrix adjust.
Identities = 305/691 (44%), Positives = 431/691 (62%), Gaps = 61/691 (8%)
Query: 36 RQKLA--QQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGK 93
R KL+ +QR+SLPI ++K L++ V + +L+++GETGSGKTTQ+ Q+L +AG GK
Sbjct: 503 RSKLSIQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGK 562
Query: 94 VIGITQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREAL 153
IG TQP EE G LG +VGY++RF+D T T IKYMTDG+LLRE L
Sbjct: 563 -IGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREIL 621
Query: 154 LDPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLS 213
+D LS+YSVI++DEAHERT+HTDVL GLLK +
Sbjct: 622 IDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLM-------------------------- 655
Query: 214 DKENGQSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIFYT 273
K+ L+LI+ SA+LDA F YF I GR FPV+I YT
Sbjct: 656 ----------------KRRLDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYT 699
Query: 274 RRAETDYLDAALITIFQIHLAEGPGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLLV 333
++ ETDYLDAALIT+ QIHL E GDILVFLTGQEEI+S + E++ L + +L++
Sbjct: 700 KQPETDYLDAALITVLQIHLTEPEGDILVFLTGQEEIDSACQSLYERMKGLGKNVPELII 759
Query: 334 APIFAALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGK 393
P+++ALPSE Q R+F PPP G RKV++ATNIAE S+TI GI YV+DPG K Y+P +
Sbjct: 760 LPVYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQ 819
Query: 394 GMESLIIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEFE-KLEDSTMPEIKRCNLSNVI 452
G+ESL+I P S++ A QR+GRAGR GPGKC+RLY E + ++ +++PEI+R NL
Sbjct: 820 GLESLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTT 879
Query: 453 LQLKALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDPV 512
L +KA+G++D+L FDF++ P A+I ++EQL+ LGAL +E L+ +GR+MA PL+P
Sbjct: 880 LTMKAMGINDLLSFDFMDPPQPQALISAMEQLYSLGALDEEGLLTK-LGRKMAEFPLEPP 938
Query: 513 YAKALIFASQFNCLEEMLITVAMLSVESIFYVPRDMLAESRIATKCFSSPEGDHITLINV 572
+K L+ + C +E+L +AM+ +IFY PR+ A++ F PEGDH+TL+ V
Sbjct: 939 LSKMLLASVDLGCSDEILTMIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAV 998
Query: 573 YRASNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGLNLA 632
Y A ++ S P WC ENFI SRSLR A D+ +Q+ + + L++
Sbjct: 999 YEAW------KAKNFSGP--------WCFENFIQSRSLRRAQDVRKQLLSIMDKYKLDVV 1044
Query: 633 SCGDDMLQFRRCLVASFFLNAAIKQPDGTYRALASGQVVQIHPSSVLFRQKPECVIFNEL 692
+ G + + R+ + A FF + A K P YR L Q V IHPSS LF+++P+ VI+++L
Sbjct: 1045 TAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHDL 1104
Query: 693 LQTNNKYVRNLTRVDYLWLTELAPQYYAMQN 723
+ T +Y+R +T +D WL ELAP+++ + +
Sbjct: 1105 VMTTKEYMREVTVIDPKWLVELAPRFFKVSD 1135
>AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family protein |
chr1:11742356-11749286 REVERSE LENGTH=1044
Length = 1044
Score = 581 bits (1498), Expect = e-166, Method: Compositional matrix adjust.
Identities = 301/690 (43%), Positives = 434/690 (62%), Gaps = 61/690 (8%)
Query: 37 QKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGKVIG 96
++L + R+SLPI + +L++ V +H +L+IVG+TGSGKTTQIPQ+L +AG GKV G
Sbjct: 395 EELQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKV-G 453
Query: 97 ITQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREALLDP 156
TQP +E GV+LGH+VGYS+RF+D TS T +KYMTDG+LLRE L +P
Sbjct: 454 CTQPRRVAAMSVAARVAQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLRELLGEP 513
Query: 157 YLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLSDKE 216
L+ YSV+IVDEAHERT+ TD+L GL+K++
Sbjct: 514 DLASYSVVIVDEAHERTLSTDILFGLVKDI------------------------------ 543
Query: 217 NGQSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIFYTRRA 276
+ R D LKL+I SA++DA F +YF A GR++PV+I YT
Sbjct: 544 -----ARFRPD-------LKLLISSATMDAEKFSDYFDTAPIFSFPGRRYPVEINYTSAP 591
Query: 277 ETDYLDAALITIFQIHLAEGPGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLLVAPI 336
E DY+DAA++TI IH+ E GDILVF TGQEEIE+ E +K ++ L + ++L++ PI
Sbjct: 592 EADYMDAAIVTILTIHVREPLGDILVFFTGQEEIETAEEILKHRIRGLGTKIRELIICPI 651
Query: 337 FAALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGME 396
+A LPSE Q ++F P P G RKV+LATNIAETS+TI GIKYV+DPG K +SY+P GME
Sbjct: 652 YANLPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGME 711
Query: 397 SLIIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEFEK-LEDSTMPEIKRCNLSNVILQL 455
SL+I P SK+ A QR+GRAGR PGKC+RLY + LE++T+PE++R NL++V+L L
Sbjct: 712 SLLITPISKASATQRAGRAGRTSPGKCYRLYTAFNYNNDLEENTVPEVQRTNLASVVLAL 771
Query: 456 KALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDPVYAK 515
K+LG+ D++ FDF++ P A++KSLE LF LGAL L+ GR+MA PLDP+ +K
Sbjct: 772 KSLGIHDLINFDFMDPPPAEALVKSLELLFALGALNKLGELT-KAGRRMAEFPLDPMLSK 830
Query: 516 ALIFASQFNCLEEMLITVAMLSV-ESIFYVPRDMLAESRIATKCFSSPE-GDHITLINVY 573
++ + ++ C +E++ AMLS+ SIFY P+D + A F + GDHI L+ VY
Sbjct: 831 MIVVSDKYKCSDEIISIAAMLSIGGSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVY 890
Query: 574 RASNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGLNLAS 633
S K +WC EN+I RS++ A DI Q++G ++++ ++++S
Sbjct: 891 --------------SSWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIDISS 936
Query: 634 CGDDMLQFRRCLVASFFLNAAIKQPDGTYRALASGQVVQIHPSSVLFRQKPECVIFNELL 693
+++ R+ +VA FF + A Q +G+YR + Q V IHP+S L + P V+++EL+
Sbjct: 937 NLNELDSVRKSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIHPNSGLSQVLPRWVVYHELV 996
Query: 694 QTNNKYVRNLTRVDYLWLTELAPQYYAMQN 723
T+ +Y+R +T + WL ELAP YY +++
Sbjct: 997 LTSKEYMRQVTELKPEWLIELAPHYYQLKD 1026
>AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein |
chr1:11742356-11749286 REVERSE LENGTH=1034
Length = 1034
Score = 580 bits (1496), Expect = e-166, Method: Compositional matrix adjust.
Identities = 301/690 (43%), Positives = 434/690 (62%), Gaps = 61/690 (8%)
Query: 37 QKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGKVIG 96
++L + R+SLPI + +L++ V +H +L+IVG+TGSGKTTQIPQ+L +AG GKV G
Sbjct: 385 EELQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKV-G 443
Query: 97 ITQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREALLDP 156
TQP +E GV+LGH+VGYS+RF+D TS T +KYMTDG+LLRE L +P
Sbjct: 444 CTQPRRVAAMSVAARVAQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLRELLGEP 503
Query: 157 YLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLSDKE 216
L+ YSV+IVDEAHERT+ TD+L GL+K++
Sbjct: 504 DLASYSVVIVDEAHERTLSTDILFGLVKDI------------------------------ 533
Query: 217 NGQSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIFYTRRA 276
+ R D LKL+I SA++DA F +YF A GR++PV+I YT
Sbjct: 534 -----ARFRPD-------LKLLISSATMDAEKFSDYFDTAPIFSFPGRRYPVEINYTSAP 581
Query: 277 ETDYLDAALITIFQIHLAEGPGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLLVAPI 336
E DY+DAA++TI IH+ E GDILVF TGQEEIE+ E +K ++ L + ++L++ PI
Sbjct: 582 EADYMDAAIVTILTIHVREPLGDILVFFTGQEEIETAEEILKHRIRGLGTKIRELIICPI 641
Query: 337 FAALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGME 396
+A LPSE Q ++F P P G RKV+LATNIAETS+TI GIKYV+DPG K +SY+P GME
Sbjct: 642 YANLPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGME 701
Query: 397 SLIIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEFEK-LEDSTMPEIKRCNLSNVILQL 455
SL+I P SK+ A QR+GRAGR PGKC+RLY + LE++T+PE++R NL++V+L L
Sbjct: 702 SLLITPISKASATQRAGRAGRTSPGKCYRLYTAFNYNNDLEENTVPEVQRTNLASVVLAL 761
Query: 456 KALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDPVYAK 515
K+LG+ D++ FDF++ P A++KSLE LF LGAL L+ GR+MA PLDP+ +K
Sbjct: 762 KSLGIHDLINFDFMDPPPAEALVKSLELLFALGALNKLGELT-KAGRRMAEFPLDPMLSK 820
Query: 516 ALIFASQFNCLEEMLITVAMLSV-ESIFYVPRDMLAESRIATKCFSSPE-GDHITLINVY 573
++ + ++ C +E++ AMLS+ SIFY P+D + A F + GDHI L+ VY
Sbjct: 821 MIVVSDKYKCSDEIISIAAMLSIGGSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVY 880
Query: 574 RASNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGLNLAS 633
S K +WC EN+I RS++ A DI Q++G ++++ ++++S
Sbjct: 881 --------------SSWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIDISS 926
Query: 634 CGDDMLQFRRCLVASFFLNAAIKQPDGTYRALASGQVVQIHPSSVLFRQKPECVIFNELL 693
+++ R+ +VA FF + A Q +G+YR + Q V IHP+S L + P V+++EL+
Sbjct: 927 NLNELDSVRKSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIHPNSGLSQVLPRWVVYHELV 986
Query: 694 QTNNKYVRNLTRVDYLWLTELAPQYYAMQN 723
T+ +Y+R +T + WL ELAP YY +++
Sbjct: 987 LTSKEYMRQVTELKPEWLIELAPHYYQLKD 1016
>AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protein |
chr2:14872728-14879615 FORWARD LENGTH=1044
Length = 1044
Score = 577 bits (1487), Expect = e-164, Method: Compositional matrix adjust.
Identities = 299/688 (43%), Positives = 426/688 (61%), Gaps = 61/688 (8%)
Query: 39 LAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGKVIGIT 98
L + RK+LPI + +L+ V+ H +LIIVGETGSGKTTQIPQ+L +AG GKV G T
Sbjct: 397 LQEDRKALPIYTYRDQLLNAVKDHQVLIIVGETGSGKTTQIPQYLHEAGYTKLGKV-GCT 455
Query: 99 QPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREALLDPYL 158
QP +E G +LGH+VGYS+RF+D TS T +KYMTDG+LLRE L +P L
Sbjct: 456 QPRRVAAMSVAARVAQEMGGKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLRELLGEPDL 515
Query: 159 SKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLSDKENG 218
YSVIIVDEAHERT+ TD+L GL+K++ R
Sbjct: 516 GSYSVIIVDEAHERTLRTDILFGLVKDIARARP--------------------------- 548
Query: 219 QSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIFYTRRAET 278
LKL+I SA++DA F ++F A GR++PVDI +T E
Sbjct: 549 ---------------DLKLLISSATMDAEKFSDFFDQAPIFRFPGRRYPVDICFTTAPEA 593
Query: 279 DYLDAALITIFQIHLAEGPGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLLVAPIFA 338
DY+DAA+ T+ IH+ E GD+LVFL GQEEIE+VE +K K+ L + ++L++ PI+A
Sbjct: 594 DYMDAAITTVLTIHVKEPLGDVLVFLPGQEEIEAVEENLKHKIRGLGTKIRELIICPIYA 653
Query: 339 ALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGMESL 398
LPSE Q ++F P P G RKV+LATNIAETS+TI GIKYV+DPG K +SY+P GMESL
Sbjct: 654 NLPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESL 713
Query: 399 IIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIE-FEKLEDSTMPEIKRCNLSNVILQLKA 457
++ P SK+ A QR+GRAGR PGKC+RLY + LED+T+PEI+R NL++V+L LK+
Sbjct: 714 LVTPISKASATQRTGRAGRTSPGKCYRLYTAFNYYNDLEDNTVPEIQRTNLASVVLSLKS 773
Query: 458 LGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDPVYAKAL 517
LG+ ++L FDF++ P A+IKSLE LF LGAL L+ GR+MA PLDP+ +K +
Sbjct: 774 LGIHNLLNFDFMDPPPSEALIKSLELLFALGALNQLGELT-KAGRRMAEFPLDPMLSKMI 832
Query: 518 IFASQFNCLEEMLITVAMLSV-ESIFYVPRDMLAESRIATKCFSSPE-GDHITLINVYRA 575
+ + ++ C +E++ AMLS+ SIFY P+D + A K F GDHI + +Y +
Sbjct: 833 VVSDKYKCSDEIISIAAMLSIGPSIFYRPKDKQVHADNAMKNFHVGNVGDHIAFLKIYNS 892
Query: 576 SNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGLNLASCG 635
K +WC EN+I RS++ A DI Q++G ++++ ++++S
Sbjct: 893 W--------------KETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIDVSSNA 938
Query: 636 DDMLQFRRCLVASFFLNAAIKQPDGTYRALASGQVVQIHPSSVLFRQKPECVIFNELLQT 695
+++ R+ +VA FF + A Q +G+YR + Q V IHP+S L + P V++++L+ T
Sbjct: 939 NELDSIRKSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIHPASGLSQVLPRWVVYHQLVLT 998
Query: 696 NNKYVRNLTRVDYLWLTELAPQYYAMQN 723
+ +Y+R +T + WL E+AP YY +++
Sbjct: 999 SKEYMRQVTELKPEWLIEIAPHYYQLKD 1026
>AT4G18465.1 | Symbols: | RNA helicase family protein |
chr4:10197056-10201611 FORWARD LENGTH=695
Length = 695
Score = 530 bits (1366), Expect = e-150, Method: Compositional matrix adjust.
Identities = 281/706 (39%), Positives = 413/706 (58%), Gaps = 77/706 (10%)
Query: 35 GRQKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGKV 94
G + +QR+ LP+ ++ V H IIVGETGSGKTTQIPQ+L +AG G+V
Sbjct: 37 GYANIEKQRQRLPVYKYRTEILYLVENHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRV 96
Query: 95 IGITQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSS-TRIKYMTDGLLLREAL 153
I TQP EE GV LG +VGY++RF+D T+S T +K++TDG+L+RE +
Sbjct: 97 IACTQPRRLAVQAVSARVAEEMGVNLGEEVGYTIRFEDHTTSGVTSVKFLTDGVLIREMM 156
Query: 154 LDPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLS 213
DP L+KYSVI++DEAHER++ TD+LLGLLK +Q R
Sbjct: 157 EDPLLTKYSVIMIDEAHERSISTDILLGLLKKIQRRRPE--------------------- 195
Query: 214 DKENGQSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVH------------- 260
L+LII SA+++A+ +F +K H
Sbjct: 196 ---------------------LRLIISSATIEAKTMSNFFNSSKKRHAPEGSTPGPKLEP 234
Query: 261 ----IEGRQFPVDIFYTRRAETDYLDAALITIFQIHLAEGPGDILVFLTGQEEIESVEGQ 316
+EGR F V I Y +DY+ + + TI I+ E PGD+LVFLTGQE+IE+
Sbjct: 235 AILSVEGRGFSVKIHYVEEPVSDYIRSVVSTILLINEREPPGDVLVFLTGQEDIETAIKL 294
Query: 317 IKEKLTQLPQESQKLLVAPIFAALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIK 376
++E+ + S LL P+++ L +Q +F P P G RKVIL+TNIAETS+T+ G+
Sbjct: 295 LEEEAHSNQKNSSGLLPLPLYSGLSRSEQELIFTPTPRGKRKVILSTNIAETSLTLEGVV 354
Query: 377 YVIDPGLVKARSYDPGKGMESLIIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEF-EKL 435
YVID G K + Y+P +ESL++ P SK+ A QRSGRAGR PGKC+RLY E F ++
Sbjct: 355 YVIDSGFSKQKFYNPISDIESLVVAPISKASARQRSGRAGRVRPGKCYRLYTEDYFLNQM 414
Query: 436 EDSTMPEIKRCNLSNVILQLKALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDECH 495
+PE++R NL + ++QLKALG+D+ILGFD+ PS A+I++LE L+ L L D+
Sbjct: 415 PGEGIPEMQRSNLVSTVIQLKALGIDNILGFDWPAPPSSEAMIRALEVLYSLQILDDDAK 474
Query: 496 LSDPVGRQMARLPLDPVYAKALIFASQFNCLEEMLITVAMLSVESIFYVPRDMLAESRIA 555
L+ P G Q+A LPLDP+ +K ++ +S+ C E++ A+LSV+S++ + R + E A
Sbjct: 475 LTSPTGFQVAELPLDPMISKMILASSELGCSHEIITIAAVLSVQSVWIIARGVQKEQDEA 534
Query: 556 TKCFSSPEGDHITLINVYRASNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACD 615
F++ EGDH+T +NVY+ FLE + KP +WC +NF+N +S++ +
Sbjct: 535 KLRFAAAEGDHVTFLNVYKG---FLESK-----KPT------QWCYKNFLNYQSMKKVVE 580
Query: 616 IHRQIKGHVQQMGLNLASCGDDMLQFRRCLVASFFLNAAIKQP--DGTYRALASGQVVQI 673
I Q+K +++G+ L SC DM R+ + A FF NA +P +G Y+ + + V I
Sbjct: 581 IRDQLKRIARRLGITLKSCDGDMEAVRKAVTAGFFANACRLEPHSNGVYKTIRGSEEVYI 640
Query: 674 HPSSVLFRQKPECVIFNELLQTNNKYVRNLTRVDYLWLTELAPQYY 719
HPSSVLFR P+ V++ ++ T +Y+RN+ ++ WLTE+AP +Y
Sbjct: 641 HPSSVLFRVNPKWVVYQSIVSTERQYMRNVVTINPSWLTEVAPHFY 686
>AT2G47250.1 | Symbols: | RNA helicase family protein |
chr2:19399923-19402981 REVERSE LENGTH=729
Length = 729
Score = 518 bits (1334), Expect = e-147, Method: Compositional matrix adjust.
Identities = 283/703 (40%), Positives = 404/703 (57%), Gaps = 75/703 (10%)
Query: 38 KLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGK---- 93
++ ++R+ LP+ + + + + LI+VGETGSGKTTQIPQF+ DA + +
Sbjct: 57 EILEKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRK 116
Query: 94 -VIGITQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREA 152
++G TQP +E V +G +VGYS+RF+D TSS T +KY+TDG+LLREA
Sbjct: 117 WLVGCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREA 176
Query: 153 LLDPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLL 212
+ DP L +Y VII+DEAHERT+ TDVL GLLK V R
Sbjct: 177 MADPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRP--------------------- 215
Query: 213 SDKENGQSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIFY 272
LKL++MSA+L+A F EYF GA + + GR PV+IFY
Sbjct: 216 ---------------------DLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPVEIFY 254
Query: 273 TRRAETDYLDAALITIFQIHLAEGPGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLL 332
T+ E DYL+AA+ T+ QIH+ E PGDILVFLTG+EEIE +I ++++ L + +
Sbjct: 255 TQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVSNLGDQVGPVK 314
Query: 333 VAPIFAALPSEQQLRVFAPPP-------SGCRKVILATNIAETSVTIPGIKYVIDPGLVK 385
V P+++ LP Q ++F P P RK++++TNIAETS+TI GI YVIDPG K
Sbjct: 315 VVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTIDGIVYVIDPGFAK 374
Query: 386 ARSYDPGKGMESLIIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEFEK-LEDSTMPEIK 444
+ Y+P +ESL++ P SK+ A QRSGRAGR PGKCFRLY E F L+ T PEI
Sbjct: 375 QKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPEIL 434
Query: 445 RCNLSNVILQLKALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQM 504
R NL+N +L LK LG+DD++ FDF++ P+ ++++LE L LGAL DE +L+ G M
Sbjct: 435 RSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTK-TGEIM 493
Query: 505 ARLPLDPVYAKALIFASQFNCLEEMLITVAMLSVESIFYVPRDMLAESRIATKCFSSPEG 564
+ PLDP +K LI + +FNC E+L AMLSV + F PR+ + A F +G
Sbjct: 494 SEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKARFGHIDG 553
Query: 565 DHITLINVYRASNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHV 624
DH+TL+NVY A K WC ENF+N+R+++ A ++ +Q+ +
Sbjct: 554 DHLTLLNVYHAY--------------KQNNEDPNWCFENFVNNRAMKSADNVRQQLVRIM 599
Query: 625 QQMGLNLASCG----DDMLQFRRCLVASFFLNAAIKQPDGTYRALASGQVVQIHPSSVLF 680
+ L + S D + R+ ++A +F+ A + G Y + QVV +HPS+ L
Sbjct: 600 SRFNLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL- 658
Query: 681 RQKPECVIFNELLQTNNKYVRNLTRVDYLWLTELAPQYYAMQN 723
KPE VI+NE + T ++R +T + WL ++A YY + N
Sbjct: 659 DHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLVDVAQHYYDLSN 701
>AT3G62310.1 | Symbols: | RNA helicase family protein |
chr3:23057516-23060561 REVERSE LENGTH=726
Length = 726
Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust.
Identities = 284/702 (40%), Positives = 406/702 (57%), Gaps = 75/702 (10%)
Query: 39 LAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDA--GLCHDGK--- 93
+ ++R++LP+ ++ ++ + + LI+VGETGSGKTTQIPQF+ DA D +
Sbjct: 54 ILEKRRTLPVWLQKEEFLKTLNNNQTLILVGETGSGKTTQIPQFVIDAVDAETSDKRRKW 113
Query: 94 VIGITQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREAL 153
++G TQP EE V +G +VGYS+RF+D +S T +KY+TDG+LLREA+
Sbjct: 114 LVGCTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAM 173
Query: 154 LDPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLS 213
DP L +Y VII+DEAHERT+ TDVL GLLK V R
Sbjct: 174 ADPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPD--------------------- 212
Query: 214 DKENGQSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIFYT 273
LKL++MSA+L+A F +YF GA + + GR PV+IFYT
Sbjct: 213 ---------------------LKLVVMSATLEAEKFQDYFSGAPLMKVPGRLHPVEIFYT 251
Query: 274 RRAETDYLDAALITIFQIHLAEGPGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLLV 333
+ E DYL+AA+ T+ QIH+ E PGDILVFLTG+EEIE +I +++ L + + V
Sbjct: 252 QEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVGNLGDQVGPIKV 311
Query: 334 APIFAALPSEQQLRVFAPPPSGC-------RKVILATNIAETSVTIPGIKYVIDPGLVKA 386
P+++ LP Q ++F P P RK++++TNIAETS+TI GI YVIDPG K
Sbjct: 312 VPLYSTLPPAMQQKIFDPAPEPVTEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQ 371
Query: 387 RSYDPGKGMESLIIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEFEK-LEDSTMPEIKR 445
+ Y+P +ESL++ P SK+ A QRSGRAGR PGKCFRLY E F L+ T PEI R
Sbjct: 372 KVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPEILR 431
Query: 446 CNLSNVILQLKALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMA 505
NL+N +L LK LG+DD++ FDF++ P+ ++++LE L LGAL D+ +L+ G M+
Sbjct: 432 SNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTK-TGEIMS 490
Query: 506 RLPLDPVYAKALIFASQFNCLEEMLITVAMLSVESIFYVPRDMLAESRIATKCFSSPEGD 565
PLDP AK LI + +FNC E+L AMLSV + F PR+ + A F EGD
Sbjct: 491 EFPLDPQMAKMLIVSPEFNCSNEILSVSAMLSVPNCFIRPREAQKAADEAKARFGHIEGD 550
Query: 566 HITLINVYRASNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQ 625
H+TL+NVY A E + WC ENFIN+R+++ A ++ +Q+ +
Sbjct: 551 HLTLLNVYHAFKQNNEDPN--------------WCYENFINNRAMKSADNVRQQLVRIMS 596
Query: 626 QMGLNLASCG----DDMLQFRRCLVASFFLNAAIKQPDGTYRALASGQVVQIHPSSVLFR 681
+ L + S D + R+ ++A +F+ A + G Y + QVV +HPS+ L
Sbjct: 597 RFNLKMCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL-D 655
Query: 682 QKPECVIFNELLQTNNKYVRNLTRVDYLWLTELAPQYYAMQN 723
KPE VI+NE + T+ ++R +T + WL ++A YY + N
Sbjct: 656 HKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDVASHYYDLSN 697
>AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein |
chr5:4122747-4128660 FORWARD LENGTH=1255
Length = 1255
Score = 509 bits (1311), Expect = e-144, Method: Compositional matrix adjust.
Identities = 267/694 (38%), Positives = 416/694 (59%), Gaps = 65/694 (9%)
Query: 37 QKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGKVIG 96
+ +A+QR+ LPI SV L++ +R++ ++++VGETGSGKTTQ+ Q+L + G +G ++G
Sbjct: 549 KTMAEQRQYLPIFSVRDELLQVIRENQVIVVVGETGSGKTTQLTQYLHEDGYTING-IVG 607
Query: 97 ITQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREALLDP 156
TQP EE ELG K+GY++RF+D T +T IKYMTDG+LLRE L D
Sbjct: 608 CTQPRRVAAMSVAKRVSEEMETELGDKIGYAIRFEDVTGPNTVIKYMTDGVLLRETLKDS 667
Query: 157 YLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLSDKE 216
L KY V+++DEAHER+++TDVL G+LK V + R R
Sbjct: 668 DLDKYRVVVMDEAHERSLNTDVLFGILKKV-VARRRD----------------------- 703
Query: 217 NGQSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIFYTRRA 276
KLI+ SA+L+A+ F +FG +I GR FPV+I Y++
Sbjct: 704 ------------------FKLIVTSATLNAQKFSNFFGSVPIFNIPGRTFPVNILYSKTP 745
Query: 277 ETDYLDAALITIFQIHLAEGPGDILVFLTGQEEIESVEGQIKEKLTQLPQESQK----LL 332
DY++AA+ IH+ PGDIL+F+TGQ+EIE+ +KE++ QL S + LL
Sbjct: 746 CEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFSLKERMEQLVSSSSREITNLL 805
Query: 333 VAPIFAALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPG 392
+ PI++ LP++ Q ++F P G RK I+ATNIAETS+T+ GI YVID G K + ++P
Sbjct: 806 ILPIYSQLPADLQAKIFQKPEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVFNPR 865
Query: 393 KGMESLIIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEF-EKLEDSTMPEIKRCNLSNV 451
GM++L + P S++ + QR+GRAGR GPG C+RLY E + ++ S +PEI+R NL NV
Sbjct: 866 MGMDALQVFPISRAASDQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNV 925
Query: 452 ILQLKALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDP 511
+L LK+L +D++L FDF++ P + I+ S+ QL++LGAL + L+D +G +M PLDP
Sbjct: 926 VLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGGLTD-LGWKMVEFPLDP 984
Query: 512 VYAKALIFASQFNCLEEMLITVAMLSVESIFYVPRDMLAESRIATKCFSSPEGDHITLIN 571
AK L+ + +C++E+L V+MLSV S+F+ P++ ES A + F PE DH+TL+N
Sbjct: 985 PLAKMLLMGERLDCIDEVLTIVSMLSVPSVFFRPKERAEESDAAREKFFVPESDHLTLLN 1044
Query: 572 VYRASNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGLNL 631
VY+ + K WC ++++ + LR A ++ Q+ ++Q+ + L
Sbjct: 1045 VYQ--------------QWKEHDYRGDWCNDHYLQVKGLRKAREVRSQLLDILKQLKIEL 1090
Query: 632 ASCGDDMLQFRRCLVASFFLNAAIKQPDGTYRALASGQVVQIHPSSVLF--RQKPECVIF 689
SCG D R+ + +++F N+A + G Y +G +HPSS L+ P+ V++
Sbjct: 1091 RSCGPDWDIVRKAICSAYFHNSARLKGVGEYVNCRTGMPCHLHPSSALYGLGYTPDYVVY 1150
Query: 690 NELLQTNNKYVRNLTRVDYLWLTELAPQYYAMQN 723
+EL+ T +Y++ T V+ WL EL P ++++++
Sbjct: 1151 HELILTTKEYMQCATSVEPHWLAELGPMFFSVKD 1184
>AT1G27900.1 | Symbols: | RNA helicase family protein |
chr1:9715615-9720346 REVERSE LENGTH=700
Length = 700
Score = 440 bits (1132), Expect = e-123, Method: Compositional matrix adjust.
Identities = 258/692 (37%), Positives = 394/692 (56%), Gaps = 83/692 (11%)
Query: 45 SLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGKVIGITQPXXXX 104
+LPI E+++VE V K+ +++I+GETGSGK+TQ+ Q L G G VI ITQP
Sbjct: 3 NLPILQFEEKIVETVEKNSVVVIIGETGSGKSTQLSQILHRHGYTKSG-VIAITQPRRVA 61
Query: 105 XXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREALLDPYLSKYSVI 164
+E V LG VGY++RF+D T+S TRIKY+TDG+LLRE+L +P L YSVI
Sbjct: 62 AVSVARRVAQELDVPLGEDVGYAIRFEDRTTSKTRIKYLTDGVLLRESLSNPMLDDYSVI 121
Query: 165 IVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLSDKENGQSSSSL 224
I+DEAHER+++TD+LLGL+K +L R R+
Sbjct: 122 ILDEAHERSLNTDILLGLVK--RLVRIRA------------------------------- 148
Query: 225 RKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIFYTRRAETDYLDAA 284
S K++I SA+LD E+F G +++ G+ +PV+I Y++ Y++++
Sbjct: 149 --------SNFKVLITSATLDGEKVSEFFSGCPVLNVPGKLYPVEILYSKERPVSYIESS 200
Query: 285 LITIFQIHLAEGPGDILVFLTGQEEIESVEGQIKEKLTQLPQES-QKLLVAPIFAALPSE 343
L IH+ E GDIL+F+TGQ++IE + +++EK+ L + S ++ P+ +LP E
Sbjct: 201 LKVAIDIHVREPEGDILIFMTGQDDIEKLVSRLEEKVRSLAEGSCMDAIIYPLHGSLPPE 260
Query: 344 QQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGMESLIIVPT 403
Q+RVF+PPP CR+ I++TNIAETS+T+ G+ YVID G VK R Y+P GM SL ++
Sbjct: 261 MQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDSGYVKQRQYNPSSGMFSLDVIQI 320
Query: 404 SKSQAMQRSGRAGREGPGKCFRLYP-EIEFEKLEDSTMPEIKRCNLSNVILQLKALGVD- 461
SK QA QR+GRAGR PGKC+RLYP + + D+T+PEI+R +L+ +L LK+L +
Sbjct: 321 SKVQANQRAGRAGRTRPGKCYRLYPLAVYRDDFLDATIPEIQRTSLAGSVLYLKSLDLPD 380
Query: 462 -DILGFDFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDPVYAKALIFA 520
DIL FDF++ PS ++ +L+QL+ + A+ DE +GR M+ LPL+P ++ LI A
Sbjct: 381 IDILKFDFLDAPSSESLEDALKQLYFIDAI-DENGAITRIGRTMSDLPLEPSLSRTLIEA 439
Query: 521 SQFNCLEEMLITVAMLSVESIFYVPRDMLAESRIATKCFS-----SPEGDHITLINVYRA 575
++ CL + L VAMLS E+ R +E + S S GDHI L+ ++ +
Sbjct: 440 NETGCLSQALTVVAMLSAETTLLPARSKPSEKKRKHDEDSNLPNGSGYGDHIQLLQIFES 499
Query: 576 SNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGLNLASCG 635
+ + + V WCKEN + R + D+ RQ+ +Q++ + G
Sbjct: 500 WD-----------RTNYDPV---WCKENGMQVRGMVFVKDVRRQLCQIMQKISKDRLEVG 545
Query: 636 ---------DDMLQFRR--CLVASFFLNAAIKQPDGTYRALA-SGQVVQIHPSSVLFRQK 683
DD + R+ C+ + + + + +G YR L+ Q+VQ+HPSSVL
Sbjct: 546 ADGRKSSSRDDYRKLRKALCVGNANQIAERMLRHNG-YRTLSFQSQLVQVHPSSVLSADN 604
Query: 684 ----PECVIFNELLQTNNKYVRNLTRVDYLWL 711
P V+++EL+ T ++RN+ VD W+
Sbjct: 605 DGMMPNYVVYHELISTTRPFMRNVCAVDMAWV 636
>AT4G16680.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:9388613-9390774
REVERSE LENGTH=656
Length = 656
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/456 (47%), Positives = 296/456 (64%), Gaps = 46/456 (10%)
Query: 37 QKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGKVIG 96
+K + R+ LPI + L++ + ++ +L+IVGETGSGKTTQIPQ+L +AG GK IG
Sbjct: 206 EKAREGREFLPIHGYREELLKLIEENQVLVIVGETGSGKTTQIPQYLQEAGYTKRGK-IG 264
Query: 97 ITQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREALLDP 156
TQP +E GV+LGH+VGYS+RF+D TS T IKYMTDG+LLRE L++P
Sbjct: 265 CTQPRRVAAMSVASRVAQEVGVKLGHEVGYSIRFEDCTSEKTVIKYMTDGMLLRELLIEP 324
Query: 157 YLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLSDKE 216
L YSVII+DEAHERT+ TD+L L+K+V
Sbjct: 325 KLDSYSVIIIDEAHERTLSTDILFALVKDV------------------------------ 354
Query: 217 NGQSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIFYTRRA 276
+ +R D L+LII SA+L+A+ F EYF A+ I GR++PV+ + +
Sbjct: 355 -----AKVRPD-------LRLIISSATLEAKKFSEYFDSARIYLIPGRRYPVEKLFRKCP 402
Query: 277 ETDYLDAALITIFQIHLAEGPGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLLVAPI 336
E DYL+ + T+ QIH E GDILVFLTGQEEIE+VE +K ++ L + ++++ PI
Sbjct: 403 EPDYLETVIRTVVQIHQTEAIGDILVFLTGQEEIETVETNLKRRMMDLGTKGSEIIICPI 462
Query: 337 FAALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGME 396
++ LP+ Q +VF P P G RKV+LATNIAETS+TI G+KYVIDPG K SY+P GME
Sbjct: 463 YSNLPTPLQAKVFEPAPKGTRKVVLATNIAETSLTIDGVKYVIDPGYCKINSYNPRTGME 522
Query: 397 SLIIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEFEKLEDSTMPEIKRCNLSNVILQLK 456
SL++ P SK+ A QR+GR+GR GPGKCFRLY + LE +T+PEI+R NL++V+L LK
Sbjct: 523 SLLVTPISKASAAQRAGRSGRTGPGKCFRLY---NIKDLEPTTIPEIQRANLASVVLTLK 579
Query: 457 ALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTD 492
+LG+ D+ FDF++ P A++K+LE L+ LGAL +
Sbjct: 580 SLGIQDVFNFDFMDPPPENALLKALELLYALGALDE 615
>AT5G10370.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
| chr5:3261245-3267188 FORWARD LENGTH=1775
Length = 1775
Score = 298 bits (762), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 218/712 (30%), Positives = 350/712 (49%), Gaps = 99/712 (13%)
Query: 36 RQKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGKVI 95
R++ + LPI + +++++++ + I++++GETGSGK+TQ+ QFL D+G+ ++
Sbjct: 296 RRECRRLEDGLPIYAYRRQILKKIHREQIMVLIGETGSGKSTQLVQFLADSGVAASESIV 355
Query: 96 GITQPXXXXXXXXXXXXXEEC-GVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREALL 154
TQP EE G + V + F S+++ YMTD LL+ +
Sbjct: 356 -CTQPRKIAAMTLADRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYMK 414
Query: 155 DPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLSD 214
D LS S +I+DEAHER+++TD+LL ++ SR I
Sbjct: 415 DRSLSGISCVIIDEAHERSLNTDLLL---ALLKKLLSRRID------------------- 452
Query: 215 KENGQSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIFYTR 274
L+L+IMSA+ DA+ +YF + + GR FPV+I Y+
Sbjct: 453 --------------------LRLVIMSATADAKQLSQYFFSCGILLVNGRNFPVEIVYSP 492
Query: 275 RAETD---------YLDAALITIFQIHLAEGPGDILVFLTGQEEIESVEGQIKEKLTQLP 325
+ Y+ + +IH E G IL FLT Q E+E E+
Sbjct: 493 SDTEENSVVGGIASYVGDVVKMAVEIHKTEKEGTILAFLTSQAEVEWA----CERFI--- 545
Query: 326 QESQKLLVAPIFAALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVK 385
+ + P+ L E+Q RVF P G RKVI ATNIAETS+TIPG+KYVID G+VK
Sbjct: 546 --TPSAIALPLHGKLSFEEQFRVFQNHP-GRRKVIFATNIAETSLTIPGVKYVIDSGMVK 602
Query: 386 ARSYDPGKGMESLIIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEFEKLEDSTMPEIKR 445
Y+P GM L + S+S A QR+GRAGR PG+C+RLY + +F+ + + PEI+R
Sbjct: 603 ESKYEPRTGMSILKVCRVSQSSARQRAGRAGRTEPGRCYRLYSKNDFDSMNLNQEPEIRR 662
Query: 446 CNLSNVILQLKALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDE--CHLSDPVGRQ 503
+L +L++ ALGV++I F+F++ P AI +++ L LGA+ ++ H G
Sbjct: 663 VHLGVALLRMLALGVNNIAEFNFVDAPVPEAIAMAVQNLVQLGAVVEKNGVHELTQEGHC 722
Query: 504 MARLPLDPVYAKALIFASQFNCLEEMLITVAMLSVESIFYVP----RDMLAESRIATKCF 559
+ +L L+P K ++ + +E ++ A+++ S + D + R+ + F
Sbjct: 723 LVKLGLEPKLGKLILGCFRHRMGKEGIVLAAVMANASSIFCRVGNFDDKMKADRLKVQ-F 781
Query: 560 SSPEGDHITLINVYRASNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQ 619
+ GD TL++VY+ S P+ + KWC EN +N++S+R D ++
Sbjct: 782 CNQNGDLFTLLSVYKEW----------ASLPRERR--NKWCWENSLNAKSMRRCEDTVKE 829
Query: 620 IKGHVQQ-----------MGLNLASCGDDMLQFRRCLVASFFLNAAIKQPDGT--YRALA 666
++ +++ N + D L+ ++AS N A+ Y
Sbjct: 830 LEICIERELTLVSPSYWVWNPNEGTKHDKHLKM--VILASLAENVAMYTGYNQLGYEVAL 887
Query: 667 SGQVVQIHPSSVL--FRQKPECVIFNELLQTNNKYVRNLTRVDYLWLTELAP 716
+GQ VQ+HPS L F QKP V+F ELL ++Y+ +T D+ L L P
Sbjct: 888 TGQQVQLHPSCSLLAFGQKPSWVVFGELLSIVDQYLVCVTACDFEALYMLDP 939
>AT4G01020.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
| chr4:439086-445043 FORWARD LENGTH=1787
Length = 1787
Score = 286 bits (733), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 210/710 (29%), Positives = 341/710 (48%), Gaps = 101/710 (14%)
Query: 46 LPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGKVIGITQPXXXXX 105
LPI + +++++++ I++++GETGSGK+TQ+ QFL D+G+ ++ TQP
Sbjct: 303 LPIYAYRRQILKKIHCEQIMVLIGETGSGKSTQLVQFLADSGVAASESIV-CTQPRKIAA 361
Query: 106 XXXXXXXXEEC-GVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREALLDPYLSKYSVI 164
EE G + V + F S+++ YMTD LL+ + D LS S +
Sbjct: 362 MTLTDRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYMKDRSLSGISCV 421
Query: 165 IVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLSDKENGQSSSSL 224
I+DEAHER++ N +L
Sbjct: 422 IIDEAHERSL------------------------------------------NTDLLLAL 439
Query: 225 RKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIFYTRRAETD----- 279
+ + L+L+IMSA+ DA +Y +H+ GR FPV+I Y+ +
Sbjct: 440 LRKLLSRRIDLRLVIMSATADANQLSQYLFDCGILHVNGRNFPVEIVYSPSGTEENSVVG 499
Query: 280 ----YLDAALITIFQIHLAEGPGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLLVAP 335
Y + +IH E G IL FLT Q E+E E+ + + P
Sbjct: 500 RIASYAGDVVKMAVEIHKTEKEGTILAFLTSQAEVEWA----CERFV-----APSAIALP 550
Query: 336 IFAALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGM 395
+ L E+Q VF P G RKVI ATNIAETS+TIPG+KYVID G+VK Y+P GM
Sbjct: 551 LHGKLSFEEQFMVFQNYP-GRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGM 609
Query: 396 ESLIIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEFEKLEDSTMPEIKRCNLSNVILQL 455
L + S+S A QR+GRAGR PG+C+RLY + +F+ + + PEI+R +L +L++
Sbjct: 610 SILKVCQVSQSSARQRAGRAGRTEPGRCYRLYSKTDFDSMNLNQEPEIRRVHLGVALLRM 669
Query: 456 KALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPV--GRQMARLPLDPVY 513
ALG+D+I F+F++ P AI +++ L LGA+ ++ + + G + +L L+P
Sbjct: 670 LALGIDNIAAFEFVDAPVPEAIAMAIQNLVQLGAVVEKNGVLELTQEGHCLVKLGLEPKL 729
Query: 514 AKALIFASQFNCLEEMLITVAMLSVESIFYVP----RDMLAESRIATKCFSSPEGDHITL 569
K ++ + +E ++ A+++ S + D + R+ + F + GD TL
Sbjct: 730 GKLILGCFRHRMGKEGIVLAAVMANASSIFCRVGNFDDKMKADRLKVQ-FCNDNGDLFTL 788
Query: 570 INVYRASNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQ--- 626
++VY+ S P+ + KWC EN +N++S+R D ++++ +++
Sbjct: 789 LSVYKEW----------ASLPRDRR--NKWCWENSLNAKSMRRCEDTVKELEICIERELT 836
Query: 627 --------MGLNLASCGDDMLQFRRCLVASFFLNAAIKQPDGT--YRALASGQVVQIHPS 676
N + D L+ ++AS N A+ Y + Q VQ+HPS
Sbjct: 837 LVSPSYWVWNPNEGTKHDKYLKM--VILASLAENVAMYTGYDQLGYEVALTSQQVQLHPS 894
Query: 677 SVL--FRQKPECVIFNELLQTNNKYVRNLTRVDY--LWLTELAPQYYAMQ 722
L F QKP V+F ELL ++Y+ +T D+ L++ + P + A Q
Sbjct: 895 CSLLAFGQKPSWVVFGELLSIVDQYLVCVTAFDFEALYMLDPPPPFDASQ 944
>AT2G35920.1 | Symbols: | RNA helicase family protein |
chr2:15075674-15080506 FORWARD LENGTH=995
Length = 995
Score = 276 bits (707), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 226/749 (30%), Positives = 346/749 (46%), Gaps = 86/749 (11%)
Query: 20 KFSNANRNRQTQL--TPGRQKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTT 77
KFS A + RQ +L T + L R+ LP +++ + V ++ +L++ GETG GKTT
Sbjct: 200 KFSFALKERQEKLKATESVKALKAFREKLPAFKMKEEFLNSVSQNQVLVVSGETGCGKTT 259
Query: 78 QIPQFLFDAGLCH----DGKVIGITQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDA 133
Q+PQF+ + + D +I TQP E G +G VGY +R +
Sbjct: 260 QLPQFILEEEISSLRGADCNII-CTQPRRISAISVASRISAERGESIGESVGYQIRLESK 318
Query: 134 TSSSTRIKYMTDGLLLREALLDPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTR--- 190
S TR+ + T G+LLR + DP L+ S ++VDE HER ++ D LL +L+++ R
Sbjct: 319 RSDQTRLLFCTTGVLLRRLIEDPNLTNVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDL 378
Query: 191 -----SRSI-SDGQGLNFGN-----------------------KHVNNVLLSDKENGQSS 221
S +I +D FGN K N+ SD N Q S
Sbjct: 379 RLILMSATINADMFSTYFGNSPTMHIPGFTFPVAELFLEDVLEKSRYNIKSSDSGNYQGS 438
Query: 222 SSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIE---GRQFPVDIFYTRRAET 278
S R+ + L + +D + + + A +E G Q VD+
Sbjct: 439 SRGRRRESESKKD-DLTTLFEDIDINSHYKSYSSATRNSLEAWSGAQIDVDLVEA----- 492
Query: 279 DYLDAALITIFQIHLAEGPGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLLVAPIFA 338
TI I EG G ILVFLTG +EI + +I + +S K LV P+
Sbjct: 493 --------TIEHICRLEGGGAILVFLTGWDEISKLLEKIN--MNNFLGDSSKFLVLPLHG 542
Query: 339 ALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGMESL 398
++P+ Q +F PP RK++LATNIAE+S+TI + YV+D G K SYD + L
Sbjct: 543 SMPTVNQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKVACL 602
Query: 399 IIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEFEKLEDSTMPEIKRCNLSNVILQLKAL 458
+ SK+ A QR GRAGR G C+RLYP++ ++ +PEI R L + L +K+L
Sbjct: 603 LPSWISKASAHQRRGRAGRVQAGVCYRLYPKVIYDAFPQYQLPEIIRTPLQELCLHIKSL 662
Query: 459 GVDDILGF--DFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDPVYAKA 516
V I F ++ P A+ ++E L +GAL D L+ P+GR + LP+DP K
Sbjct: 663 QVGSIGSFLAKALQPPDALAVENAIELLKTIGALNDVEELT-PLGRHLCTLPVDPNIGKM 721
Query: 517 LIFASQFNCLEEMLITVAMLSVESIFYVPRDMLAESRIATKCFSSPE-GDHITLINVYRA 575
L+ + F C+ L A L+ S F +P + E+ A + F+ DHI L+ Y
Sbjct: 722 LLIGAIFQCVNPALTIAAALAYRSPFVLPLNRKEEADEAKRYFAGDSCSDHIALLKAYEG 781
Query: 576 SNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGLNLASCG 635
D + +EK +C +NF++ +LR D+ Q + +G S
Sbjct: 782 YRD--------AKRGGNEK---DFCWQNFLSPVTLRMMEDMRNQFLDLLSDIGFVDKSKP 830
Query: 636 D-------DMLQFRRCLVASFFLNAAIKQPDGTYRALASGQV--VQIHPSSVLFRQK--- 683
+ DM L A + N + G A + ++ V IHP SV R
Sbjct: 831 NAYNQYSYDMEMISAVLCAGLYPNVVQCKRRGKRTAFYTKELGKVDIHPGSVNARVNLFS 890
Query: 684 PECVIFNELLQTNNKYVRNLTRV-DYLWL 711
++++E ++T + Y+R+ T + DY L
Sbjct: 891 LPYLVYSEKVKTTSVYIRDSTNISDYALL 919
>AT1G48650.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:17989670-17995169 REVERSE LENGTH=1197
Length = 1197
Score = 250 bits (638), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 215/726 (29%), Positives = 352/726 (48%), Gaps = 61/726 (8%)
Query: 26 RNRQTQL--TPGRQKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFL 83
+++Q Q +P QK+ RK+LP + L++ + + ++++ GETG GKTTQ+PQ++
Sbjct: 277 KSKQQQWVDSPEGQKMVGFRKTLPAYKEKDALLKAIAANQVVVVSGETGCGKTTQLPQYI 336
Query: 84 FDAGL-CHDGKVIGI--TQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRI 140
++ + G I TQP E G ++G VGY VR + TR+
Sbjct: 337 LESEIEAARGATCSIICTQPRRISAISVSERVAAERGEQIGESVGYKVRLEGMRGRDTRL 396
Query: 141 KYMTDGLLLREALLDPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRS--RSISDGQ 198
+ T G+LLR L+D L + ++VDE HER ++ D LL +LK++ R + I
Sbjct: 397 LFCTTGVLLRRLLVDRSLKGVTHVVVDEIHERGMNEDFLLIVLKDLLPRRPDLKLILMSA 456
Query: 199 GLN-------FGNK---HVNNVLLSDK----ENGQSSSSLRKDHHKKISPL---KLIIMS 241
LN FG H+ + E+ +S R + +I K M
Sbjct: 457 TLNAELFSSYFGGAPAMHIPGFTYPVRAHFLEDYLETSGYRLTTYNQIDDYGEEKTWKMQ 516
Query: 242 ASLDARAFCEYFGGAKAVHIEGRQFPVDIFYTRRAET----DYLDAALITIFQIHLAEG- 296
+ A +E F F TR + + D + LI H+ +G
Sbjct: 517 KQAQFKKRKSLISSAVEDALEAADFKGYNFRTRDSLSCWSPDSIGFNLIENVLCHIVKGE 576
Query: 297 -PGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLLVAPIFAALPSEQQLRVFAPPPSG 355
PG +LVF+TG ++I S++ Q++ L + K+L+ ++ S +Q +F PP G
Sbjct: 577 RPGAVLVFMTGWDDINSLKNQLEAH--SLLGDPNKVLLLACHGSMASSEQRLIFDRPPEG 634
Query: 356 CRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGMESLIIVPTSKSQAMQRSGRA 415
RK++LATN+AETS+TI + YVID G K SYD L+ SK+ A QR GRA
Sbjct: 635 IRKIVLATNMAETSITINDVVYVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRA 694
Query: 416 GREGPGKCFRLYPEIEFEKLEDSTMPEIKRCNLSNVILQLKALGVDDILGF--DFIEKPS 473
GR PG+C+ LYP +E D PE+ R L ++ LQ+K+LG+ I F ++ P
Sbjct: 695 GRVMPGECYHLYPRCVYEAFADYQQPELLRTPLQSLCLQIKSLGLGSISEFLSRALQPPE 754
Query: 474 RAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDPVYAKALIFASQFNCLEEMLITV 533
++ ++E L ++GAL D+ +L+ P+G+ ++ LP++P K LI + FNCL+ ++ V
Sbjct: 755 ALSVQNAVEYLKIIGALDDDENLT-PLGKNLSMLPVEPKLGKMLILGAIFNCLDPVMTVV 813
Query: 534 AMLSVESIFYVPRDMLAESRIATKCFSSPE-GDHITLINVYRASNDFLEKRSMEMSKPKS 592
A LSV F +P D + A FS + DH+TL+ Y D S
Sbjct: 814 AGLSVRDPFLMPFDKKDLAETARSKFSGRDYSDHLTLVRAYNGWKDAERTHSG------- 866
Query: 593 EKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGL--NLASCGD---DMLQFRRCLVA 647
+C +NF++S++L+ + +Q +++ L N+ C D R + A
Sbjct: 867 ----YDYCWKNFLSSQTLKAMDSMRKQFFNLLKEASLIDNIEGCSKLSHDEHLVRAIICA 922
Query: 648 SFF---LNAAIKQPDGTYRALASGQVVQIHPSSVLFRQKP----ECVIFNELLQTNNKYV 700
F + K+ T + + GQV+ ++ SSV P ++FN+ ++ N+ ++
Sbjct: 923 GMFPGVCSVVNKEKSITLKTMEDGQVL-LYSSSV-NGNVPMIPFPWLVFNDKVKVNSVFL 980
Query: 701 RNLTRV 706
R+ T V
Sbjct: 981 RDSTAV 986
>AT1G48650.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:17989517-17995169 REVERSE LENGTH=1206
Length = 1206
Score = 249 bits (637), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 215/726 (29%), Positives = 352/726 (48%), Gaps = 61/726 (8%)
Query: 26 RNRQTQL--TPGRQKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFL 83
+++Q Q +P QK+ RK+LP + L++ + + ++++ GETG GKTTQ+PQ++
Sbjct: 277 KSKQQQWVDSPEGQKMVGFRKTLPAYKEKDALLKAIAANQVVVVSGETGCGKTTQLPQYI 336
Query: 84 FDAGL-CHDGKVIGI--TQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRI 140
++ + G I TQP E G ++G VGY VR + TR+
Sbjct: 337 LESEIEAARGATCSIICTQPRRISAISVSERVAAERGEQIGESVGYKVRLEGMRGRDTRL 396
Query: 141 KYMTDGLLLREALLDPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRS--RSISDGQ 198
+ T G+LLR L+D L + ++VDE HER ++ D LL +LK++ R + I
Sbjct: 397 LFCTTGVLLRRLLVDRSLKGVTHVVVDEIHERGMNEDFLLIVLKDLLPRRPDLKLILMSA 456
Query: 199 GLN-------FGNK---HVNNVLLSDK----ENGQSSSSLRKDHHKKISPL---KLIIMS 241
LN FG H+ + E+ +S R + +I K M
Sbjct: 457 TLNAELFSSYFGGAPAMHIPGFTYPVRAHFLEDYLETSGYRLTTYNQIDDYGEEKTWKMQ 516
Query: 242 ASLDARAFCEYFGGAKAVHIEGRQFPVDIFYTRRAET----DYLDAALITIFQIHLAEG- 296
+ A +E F F TR + + D + LI H+ +G
Sbjct: 517 KQAQFKKRKSLISSAVEDALEAADFKGYNFRTRDSLSCWSPDSIGFNLIENVLCHIVKGE 576
Query: 297 -PGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLLVAPIFAALPSEQQLRVFAPPPSG 355
PG +LVF+TG ++I S++ Q++ L + K+L+ ++ S +Q +F PP G
Sbjct: 577 RPGAVLVFMTGWDDINSLKNQLEAH--SLLGDPNKVLLLACHGSMASSEQRLIFDRPPEG 634
Query: 356 CRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGMESLIIVPTSKSQAMQRSGRA 415
RK++LATN+AETS+TI + YVID G K SYD L+ SK+ A QR GRA
Sbjct: 635 IRKIVLATNMAETSITINDVVYVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRA 694
Query: 416 GREGPGKCFRLYPEIEFEKLEDSTMPEIKRCNLSNVILQLKALGVDDILGF--DFIEKPS 473
GR PG+C+ LYP +E D PE+ R L ++ LQ+K+LG+ I F ++ P
Sbjct: 695 GRVMPGECYHLYPRCVYEAFADYQQPELLRTPLQSLCLQIKSLGLGSISEFLSRALQPPE 754
Query: 474 RAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDPVYAKALIFASQFNCLEEMLITV 533
++ ++E L ++GAL D+ +L+ P+G+ ++ LP++P K LI + FNCL+ ++ V
Sbjct: 755 ALSVQNAVEYLKIIGALDDDENLT-PLGKNLSMLPVEPKLGKMLILGAIFNCLDPVMTVV 813
Query: 534 AMLSVESIFYVPRDMLAESRIATKCFSSPE-GDHITLINVYRASNDFLEKRSMEMSKPKS 592
A LSV F +P D + A FS + DH+TL+ Y D S
Sbjct: 814 AGLSVRDPFLMPFDKKDLAETARSKFSGRDYSDHLTLVRAYNGWKDAERTHSG------- 866
Query: 593 EKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGL--NLASCGD---DMLQFRRCLVA 647
+C +NF++S++L+ + +Q +++ L N+ C D R + A
Sbjct: 867 ----YDYCWKNFLSSQTLKAMDSMRKQFFNLLKEASLIDNIEGCSKLSHDEHLVRAIICA 922
Query: 648 SFF---LNAAIKQPDGTYRALASGQVVQIHPSSVLFRQKP----ECVIFNELLQTNNKYV 700
F + K+ T + + GQV+ ++ SSV P ++FN+ ++ N+ ++
Sbjct: 923 GMFPGVCSVVNKEKSITLKTMEDGQVL-LYSSSV-NGNVPMIPFPWLVFNDKVKVNSVFL 980
Query: 701 RNLTRV 706
R+ T V
Sbjct: 981 RDSTAV 986
>AT5G04895.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:1428796-1434516 FORWARD LENGTH=1161
Length = 1161
Score = 214 bits (545), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 177/653 (27%), Positives = 315/653 (48%), Gaps = 79/653 (12%)
Query: 25 NRNRQTQLTPGRQKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLF 84
N R Q +P + + + RK+LP ++RL++ + ++ ++++ GETG GKTTQ+PQ++
Sbjct: 239 NMQRTWQESPEGRTMLEFRKTLPSFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYIL 298
Query: 85 DA-------GLCHDGKVIGITQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSS 137
++ C+ I TQP E G LG VG+ VR + +
Sbjct: 299 ESEIESGRGAFCN----IICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMRGKN 354
Query: 138 TRIKYMTDGLLLREALLDPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDG 197
T + + T G+LLR L D L+ + + VDE HER ++ D L+ +LK + L R +
Sbjct: 355 THLLFCTSGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLIIVLKEL-LPRRPDLR-- 411
Query: 198 QGLNFGNKHVNNVLLSDKENGQSSSSLRKDHHKKISPLKLIIMSASLDARAF-------C 250
L + +N L S+ G + + H P+K + L+ +
Sbjct: 412 --LVLMSATLNAELFSNYYGGAPTIHIPGFTH----PVKAHFLEDVLEITGYKLTSFNQV 465
Query: 251 EYFGGAKAVHIEGRQFP-------------------VDIFYTRRAET------DYLDAAL 285
+ +G K + + P + + +R ++ D + L
Sbjct: 466 DDYGQEKTWKTQKQLMPRKRKNQITTLVEEALSKSNFESYNSRTRDSLSSWMPDCIGFNL 525
Query: 286 ITIFQIHLA--EGPGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLLVAPIFAALPSE 343
I H+ E PG +LVFLTG ++I S+ QIK L + ++L+ ++ +
Sbjct: 526 IEAVLCHICRKERPGAVLVFLTGWDDIRSLSDQIKAH--PLLGDPNRVLLLMCHGSMATA 583
Query: 344 QQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGMESLIIVPT 403
+Q +F P RK++LATN+AE S+TI + +V+D G K +YD L+
Sbjct: 584 EQRLIFERAPPNIRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWI 643
Query: 404 SKSQAMQRSGRAGREGPGKCFRLYPEIEFEKLEDSTMPEIKRCNLSNVILQLKALGVDDI 463
S++ A QR GRAGR PG+C+ LYP+ ++ + +PE+ R L+++ LQ+K+L V+ I
Sbjct: 644 SQASARQRRGRAGRLFPGECYHLYPKCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVESI 703
Query: 464 LGF--DFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDPVYAKALIFAS 521
F ++ P A+ ++ L ++GAL ++ +L+D +G+ ++ LP+DP K LI +
Sbjct: 704 AEFLSAALQAPESLAVQNAIGFLKMIGALDEKENLTD-LGKLLSILPVDPKLGKMLIMGA 762
Query: 522 QFNCLEEMLITVAMLSVESIFYVPRD-----MLAESRIATKCFSSPEGDHITLINVYRAS 576
F C + +L V+ LSV F +P+D + A+ R + K +S DH+ L+ +
Sbjct: 763 IFRCFDPILTIVSGLSVRDPFLLPQDKKDLALSAKLRFSAKDYS----DHMALVRAFEGW 818
Query: 577 NDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGL 629
D + E ++C NF+++++L+ + +Q +++ GL
Sbjct: 819 KD-----------AEREGSAYEFCWRNFLSAQTLQAIHSLRKQFNYILKEAGL 860
>AT2G01130.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:88847-94635 REVERSE LENGTH=1113
Length = 1113
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 133/426 (31%), Positives = 215/426 (50%), Gaps = 33/426 (7%)
Query: 295 EGPGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLLVAPI--FAALPSEQQLRVFAPP 352
EGPG IL+FLTG ++I S +KEKL P LV + ++ + +Q +F P
Sbjct: 496 EGPGGILIFLTGWDDISS----LKEKLQIHPIFGNPDLVMLLACHGSMETFEQRLIFEEP 551
Query: 353 PSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGMESLIIVPTSKSQAMQRS 412
SG RK++LATNIAETS+TI + +VID G K SYD L+ SK A QR
Sbjct: 552 ASGVRKIVLATNIAETSITINDVAFVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRR 611
Query: 413 GRAGREGPGKCFRLYPEIEFEKLEDSTMPEIKRCNLSNVILQLKALGVDDILGF--DFIE 470
GRAGR PG+C+ LYP+ ++ + +PEI R L ++ LQ+K+L + I F ++
Sbjct: 612 GRAGRVRPGQCYHLYPKCVYDAFAEYQLPEILRTPLHSLCLQIKSLNLGSISEFLSRALQ 671
Query: 471 KPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDPVYAKALIFASQFNCLEEML 530
P A+ K++ L ++GAL DE +GR +++LP++P K LI + CL+ +L
Sbjct: 672 SPELLAVQKAIAFLKIIGAL-DENEDLTTLGRYLSKLPMEPKLGKMLILGAILGCLDPIL 730
Query: 531 ITVAMLSVESIFYVPRDMLAESRIATKCFSSPEGDHITLINVYRASNDFLEKRSMEMSKP 590
A LSV F P+D + A FS DH+ L+ Y K
Sbjct: 731 TVAAGLSVRDPFLTPQDKKDLAEAAKSQFSRDHSDHLALVRAYEG-----------WKKA 779
Query: 591 KSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGL---NLASC---GDDMLQFRRC 644
+ E + +C +NF++ +SLR + ++ ++ GL N + C G+D R
Sbjct: 780 EEESAVYDYCWKNFLSIQSLRAIDSLRKEFFSLLKDTGLIDGNPSICNSEGNDANLTRAV 839
Query: 645 LVASFF---LNAAIKQPDGTYRALASGQVVQIHPSSVLFRQKP---ECVIFNELLQTNNK 698
+ + + + + + + GQV+ ++ +S R+ ++FNE ++ N+
Sbjct: 840 ICYGMYPGICSVVHNERSFSLKTMEDGQVL-LYSNSENARETKIPYPWLVFNEKIKVNSV 898
Query: 699 YVRNLT 704
++R+ T
Sbjct: 899 FLRDST 904
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 115/247 (46%), Gaps = 45/247 (18%)
Query: 25 NRNRQTQLTPGRQKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLF 84
+R + Q + Q++ R SLP ++ + ++ +++I GETG GKTTQIPQF+
Sbjct: 199 DRQQYWQASVEGQRMLDSRTSLPAFKQRHSVLTAISQNQVIVISGETGCGKTTQIPQFIL 258
Query: 85 DAGL-CHDGKVIGI--TQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIK 141
++ + + G I TQP E G +LG VGY VR + TR+
Sbjct: 259 ESEIEANRGAFSSIICTQPRRISAMSVSERVAYERGEQLGESVGYKVRLEGVKGRDTRLL 318
Query: 142 YMTDGLLLREALLDPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLN 201
+ T G+LLR L+D L + +IVDE HER ++ D LL +LK++ RS
Sbjct: 319 FCTTGILLRRLLVDRNLRGVTHVIVDEIHERGMNEDFLLIILKDLLSRRSE--------- 369
Query: 202 FGNKHVNNVLLSDKENGQSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHI 261
LKLI+MSA+LDA F YFGGA ++I
Sbjct: 370 ---------------------------------LKLILMSATLDAELFSSYFGGAGVIYI 396
Query: 262 EGRQFPV 268
G +PV
Sbjct: 397 PGFTYPV 403
>AT1G58060.1 | Symbols: | RNA helicase family protein |
chr1:21489480-21501775 REVERSE LENGTH=1459
Length = 1459
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 151/498 (30%), Positives = 237/498 (47%), Gaps = 77/498 (15%)
Query: 274 RRAETDYLDAALITIFQIHLAEG--PGDILVFLTGQEEIESVEGQIKEKLTQLPQESQKL 331
+R D +D L+ H+ + G IL+FL G EI + + + L
Sbjct: 890 KRLNEDRIDYELLEELICHIDDTCEEGAILIFLPGVAEIYMLLDMLAASYRFRGPAADWL 949
Query: 332 LVAPIFAALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDP 391
L P+ +++ S +Q +VF PP G RKVI ATNIAETS+TI + YVID G K Y+P
Sbjct: 950 L--PLHSSIASSEQRKVFLRPPKGLRKVIAATNIAETSITIDDVVYVIDSGKHKENRYNP 1007
Query: 392 GKGMESLIIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEFEKL-EDSTMPEIKRCNLSN 450
K + S++ S++ A QR+GRAGR PG CF LY FEKL +PE+ R L
Sbjct: 1008 QKKLSSMVEDWISQANARQRTGRAGRVKPGICFSLYTRYRFEKLMRPYQVPEMLRMPLVE 1067
Query: 451 VILQLKALGVDDILGF--DFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLP 508
+ LQ+K LG+ I F +E PS A+ ++ L +GA+ + L+ P+G +A+LP
Sbjct: 1068 LCLQIKLLGLGHIKPFLSRALEPPSEGAMTSAISLLHEVGAVEGDEELT-PLGHHLAKLP 1126
Query: 509 LDPVYAKALIFASQFNCLEEMLITVAMLSVESIFYVPRD-----------MLAESRIATK 557
+D + K L++ F CL +L A LS +S F P+D +L+++ +++
Sbjct: 1127 VDVLIGKMLLYGGIFGCLSPILSIAAFLSYKSPFIYPKDEKQNVDRVKLALLSDNGVSSS 1186
Query: 558 CFSSPE--GDHITLINVYRASNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACD 615
++ + DH+ ++ Y L++R M K +++C+ F++S +R D
Sbjct: 1187 DLNNNDRQSDHLLMMVAYDKWVKILQERGM--------KAAQRFCESKFLSSSVMRMIRD 1238
Query: 616 IHRQIKGHVQQMGL-NLASCGD--------------DMLQ-----------FRRCLVASF 649
+ Q + +GL NL G+ D Q + L A
Sbjct: 1239 MRVQFGTLLADIGLINLPKTGEFSGRKKENLDVWFSDPTQPFNMYSQQPEVVKAILCAGL 1298
Query: 650 F--------------LNAAIKQPDGT--YRALASG-QVVQIHPSSV--LFR--QKPECVI 688
+ N+ KQ + T Y A G + V IHPSS+ F+ Q P ++
Sbjct: 1299 YPNIAANDKGITETTFNSLTKQGNQTKSYSAWYDGRREVHIHPSSINSNFKAFQNP-FLV 1357
Query: 689 FNELLQTNNKYVRNLTRV 706
F E ++TN Y+R+ T V
Sbjct: 1358 FLEKVETNKVYLRDTTIV 1375
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 51/247 (20%)
Query: 37 QKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFD-------AGLC 89
+ + + R +LPI+ V+ +++ +++ D+L++ GETGSGKTTQ+PQF+ D G C
Sbjct: 605 KDMLKTRTALPISEVKNGILQHLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSGHGGYC 664
Query: 90 HDGKVIGITQPXXXXXXXXXXXXXEE-CGVELGHK---VGYSVRFDDATSSSTRIKYMTD 145
+ I TQP +E C G VGY VR + A S TR+ + T
Sbjct: 665 N----IICTQPRRIAAISVAQRVADERCESSPGLDDSLVGYQVRLESARSDKTRLLFCTT 720
Query: 146 GLLLREALLDPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNK 205
G+LLR+ D L+ + IIVDE HER++ D LL +LK+
Sbjct: 721 GILLRKLAGDRTLNDVTHIIVDEVHERSLLGDFLLIILKS-------------------- 760
Query: 206 HVNNVLLSDKENGQSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQ 265
L +K++ ++S RK LK+I+MSA++DA F YFG + +GR
Sbjct: 761 ------LIEKQSCDNTS--RK--------LKVILMSATVDADLFSRYFGHCPVITAQGRT 804
Query: 266 FPVDIFY 272
PV +
Sbjct: 805 HPVTTHF 811
>AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protein |
chr1:12099738-12104108 REVERSE LENGTH=1237
Length = 1237
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 155/284 (54%), Gaps = 29/284 (10%)
Query: 38 KLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGL-----CHDG 92
++ + RK LPI +E+ ++E + +H +II G+TG GKTTQ+PQFL++AG
Sbjct: 233 EVEETRKDLPIVMMEQEIMEAINRHPAVIISGQTGCGKTTQVPQFLYEAGFGSKQFSSRS 292
Query: 93 KVIGITQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREA 152
+IGITQP E GV LG +VG+ VR+D ++ IK+MTDG+LLRE
Sbjct: 293 GIIGITQPRRVAVLATAKRVAFELGVRLGKEVGFQVRYDKKIGENSSIKFMTDGILLREI 352
Query: 153 LLDPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLL 212
D L +YSVII+DEAHER+++TD+L+G+L V R + Q
Sbjct: 353 QNDFLLRRYSVIILDEAHERSLNTDILIGMLTRVIKIRQEYYEEQQK------------- 399
Query: 213 SDKENGQSSSSLRKDHHKKISPLKLIIMSASLDARAFCE----YFGGAKAVHIEGRQFPV 268
S + G +S +I+PLKLI+MSA+L F + + + RQ+PV
Sbjct: 400 SLQSGGTVTSEC------QITPLKLILMSATLRVEDFVSGKRLFPNIPPLIEVPTRQYPV 453
Query: 269 DIFYTRRAE-TDYLDAALITIFQIHLAEGPGDILVFLTGQEEIE 311
I ++++ E DY+ A + IH G ILVF+TGQ E++
Sbjct: 454 TIHFSKKTEIVDYIGEAYKKVMSIHKKLPQGGILVFVTGQREVD 497
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 210/446 (47%), Gaps = 69/446 (15%)
Query: 330 KLLVAPIFAALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSY 389
KL V P++A L QLRVF R V++ATN+AETS+TIPGIKYV+D G VK ++Y
Sbjct: 646 KLRVLPLYAMLSPAAQLRVFEEVEKEERLVVVATNVAETSLTIPGIKYVVDTGRVKVKNY 705
Query: 390 DPGKGMESLIIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEFEKL-EDSTMPEIKRCNL 448
D GMES + S++ A QR+GRAGR GPG C+RLY F + E+S++PEI + +
Sbjct: 706 DSKTGMESYEVDWISQASASQRAGRAGRTGPGHCYRLYSSAVFSNIFEESSLPEIMKVPV 765
Query: 449 SNVILQLKALGVDDILGFDFIEKPSRAAI------IKSLEQLFLLGALTDECHLSDPVGR 502
VIL +K++ + + F F P +AI +K+LE L G LT P+G+
Sbjct: 766 DGVILLMKSMNIPKVENFPFPTPPEPSAIREAERCLKALEALDSNGGLT-------PLGK 818
Query: 503 QMARLPLDPVYAKALIFASQF-----NCLEEMLITVAMLSVESIFYVPRDMLA------- 550
M+ P+ P +++ L+ Q N LI ++ + +P ++
Sbjct: 819 AMSHYPMSPRHSRMLLTVIQMLKETRNYSRANLILGYAVAAVAALSLPNPLIMEFEGEKK 878
Query: 551 -ESRIATKC----------------------FSSPEGDHITL---INVYRASND---FLE 581
ES+ A K FS+P D +T+ ++ + S + F E
Sbjct: 879 NESKDADKTVKQEDKQRKKDRKEKIKAARDRFSNPSSDALTVAYALHSFEVSENGMGFCE 938
Query: 582 KRSM------EMSKPKSE--KVLRKWCKENFI-NSRSLRHAC--DIHRQIKGHVQQMGLN 630
+ EMSK K + +++ CK + +S S H D+ + +
Sbjct: 939 ANGLHLKTMDEMSKLKDQLLRLVFNCCKPSETEDSFSWTHGTIQDVEKSWRITTSTSSKT 998
Query: 631 -LASCGDDMLQFRRCLVASFFLNAAIKQPDGTYRALASGQVVQIHPSSVLFRQKPECVIF 689
L +++L C A + A K Y+A A + V +H S L PE +++
Sbjct: 999 PLLQNEEELLGEAIC--AGWADRVARKTRATEYQACAVQEPVFLHRWSSLINSAPELLVY 1056
Query: 690 NELLQTNNKYVRNLTRVDYLWLTELA 715
+ELL TN Y+ TRV WL + A
Sbjct: 1057 SELLLTNRPYMHGATRVRPEWLVKHA 1082
>AT5G14900.1 | Symbols: | helicase associated (HA2)
domain-containing protein | chr5:4822676-4823581 REVERSE
LENGTH=301
Length = 301
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 153/284 (53%), Gaps = 23/284 (8%)
Query: 447 NLSNVILQLKALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMAR 506
NL+N +L LK L V +++ FD I+ P+ + ++L+ L+ LGAL D+C+L+ G M+
Sbjct: 3 NLANTVLTLKGLSVKNLVRFDLIDSPAPDTLARALDDLYHLGALDDDCNLT-KTGEMMSE 61
Query: 507 LPLDPVYAKALIFASQFNCLEEMLITVAMLSVESIFYVPR-DMLAESRIATKCFSSPEGD 565
PLDP AK LI + QFNC E+L AMLSV + F PR + + A F+ +GD
Sbjct: 62 FPLDPQMAKMLIVSPQFNCSNEILSISAMLSVPNCFIRPRGEAQKAADEAKSSFAHIDGD 121
Query: 566 HITLINVYRASNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQ 625
H+TL+N++ A FL+ P WC FIN R+++ A + Q+ +
Sbjct: 122 HLTLLNLFHA---FLQNN----QDP-------NWCCTKFINYRAMKSAVSVREQLVRIML 167
Query: 626 QMGLNLAS----CGDDMLQFRRCLVASFFLNAAIKQPDGTYRAL--ASGQVVQIHPSSVL 679
+ + L S D + R+ L+A +F+ A + G Y QVV +HPS+ L
Sbjct: 168 RFQIKLCSPDFNSRDYYVNIRKALLAGYFMQVAHLERTGHYLTFRDKDDQVVHLHPSNCL 227
Query: 680 FRQKPECVIFNELLQTNNKYVRNLTRVDYLWLTELAPQYYAMQN 723
KPE V++NE + T+ ++R +T + WL ++AP YY + N
Sbjct: 228 -DHKPEWVVYNEYVFTSRNFIRTVTHIRGEWLVDVAPHYYKLAN 270
>AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase |
chr1:2040567-2047333 FORWARD LENGTH=1576
Length = 1576
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 179/343 (52%), Gaps = 28/343 (8%)
Query: 298 GDILVFLTGQEEIESVEGQIKEKL--TQLPQESQKLLVAPIFAALPSEQQLRVFAPPPSG 355
G ILVFL G EEI + KEKL + S K ++ + + +P+E+Q +VF PP G
Sbjct: 576 GAILVFLPGWEEI----SKTKEKLLDDRFFAHSAKFIILCLHSRVPAEEQKKVFNRPPRG 631
Query: 356 CRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGMESLIIVPTSKSQAMQRSGRA 415
CRK++LATNIAE++VTI + YVID G +K +SYDP + +L SK+ A QR+GRA
Sbjct: 632 CRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNDVSTLQSSWVSKANAKQRAGRA 691
Query: 416 GREGPGKCFRLYPEIEFEKLEDSTMPEIKRCNLSNVILQLKALGVDDILGFDFIEKPSRA 475
GR G C+ LY ++ L + +PE+ R + + LQ+K L + + DF++K
Sbjct: 692 GRCQAGICYHLYSKLRAASLPEYRVPEVMRMPVDELCLQVKMLDPNCNVN-DFLQKLMDP 750
Query: 476 AIIKSLEQLFL----LGALTDECHLSDPVGRQMARLPLDPVYAKALIFASQFNCLEEMLI 531
+ +S+E + +GALT E L++ +G++ +LP+ P +K + FA NCL+ LI
Sbjct: 751 PVAQSIENALIILKDIGALTPEEELTE-LGQKFGQLPVHPRISKMIYFAILVNCLDPALI 809
Query: 532 TVAMLSVESIFYVP-----RDMLAESRIATKCFSSPEGDHITLINVYRASNDFLEKRSME 586
+ F +P R A ++ DH+ + ++
Sbjct: 810 LACAADEKDPFTMPLSPGDRKKAAAAKHELASLYGDHSDHLATVAAFQC----------- 858
Query: 587 MSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGL 629
K+ +++C + FI+ ++ D+ R+++G + + G+
Sbjct: 859 WKNAKASGQAKEFCSKYFISQVVMKRLDDLCRKLQGELNRHGV 901
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 111/242 (45%), Gaps = 49/242 (20%)
Query: 37 QKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGK--- 93
+++ + R LPIAS ++ V + +++I GETG GKTTQ+PQ+L D + H K
Sbjct: 208 REIFEARSKLPIASFRDAIISAVESNQVVLIAGETGCGKTTQVPQYLLDH-MWHSKKEAC 266
Query: 94 VIGITQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREAL 153
I TQP E G +G VGY VR + + + T+G+LLR +
Sbjct: 267 KIICTQPRRISAISVSDRISWERGETIGRTVGYKVRLQSEGGRESSVVFCTNGILLRVLI 326
Query: 154 ---LDPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNV 210
++ + + IIVDE HER ++D +L +L+++
Sbjct: 327 GKGVNSSVPDITHIIVDEIHERDSYSDFMLMILRDL------------------------ 362
Query: 211 LLSDKENGQSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDI 270
L + H L+LI+MSA+LDA F EYFGG V + G +PV
Sbjct: 363 -------------LPSNPH-----LRLILMSATLDAERFSEYFGGCPVVRVPGFTYPVRT 404
Query: 271 FY 272
F+
Sbjct: 405 FF 406
>AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissue
and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299
Length = 1299
Score = 162 bits (410), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 122/435 (28%), Positives = 211/435 (48%), Gaps = 45/435 (10%)
Query: 298 GDILVFLTGQEEIESVEGQIKEKLTQLP--QESQKLLVAPIFAALPSEQQLRVFAPPPSG 355
G ILVFL G ++I + +++L + P +S K + + + +P+ +Q +VF PP G
Sbjct: 552 GAILVFLPGWDDI----NKTRQRLLENPFFADSAKFDIICLHSMVPAGEQKKVFNRPPPG 607
Query: 356 CRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGMESLIIVPTSKSQAMQRSGRA 415
CRK++LATNIAE++VTI + YVID G +K +SYDP + +L SK+ A QR GRA
Sbjct: 608 CRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKANAKQRQGRA 667
Query: 416 GREGPGKCFRLYPEIEFEKLEDSTMPEIKRCNLSNVILQLKALGVDDILGFDFIEK---- 471
GR PG C+ LY + + D +PEIKR + + LQ+K L + DF++K
Sbjct: 668 GRCQPGICYHLYSRLRAASMPDFKVPEIKRMPVEELCLQVKILD-PNCKTNDFLQKLLDP 726
Query: 472 PSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDPVYAKALIFASQFNCLEEMLI 531
P +I +L L +GALT + L++ +G + LP+ P+ +K L FA NCL+ L
Sbjct: 727 PVDQSIANALSILQDIGALTPQEELTE-LGEKFGHLPVHPLISKMLFFAVLVNCLDPALT 785
Query: 532 TVAMLSVESIFYVP-----RDMLAESRIATKCFSSPEGDHITLINVYRASNDFLEKRSME 586
+ F +P R A +++ + DH+ ++ +
Sbjct: 786 LACAADYKEPFTMPMSPVERQKAAAAKLELASLCGGDSDHLAVVAAFEC----------- 834
Query: 587 MSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGL---NLASCGDDMLQ--- 640
K + ++C + F++ +++ + Q++ +++ G+ +++SC +
Sbjct: 835 WKNAKGRGLSAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPNDISSCSQNSRDPGI 894
Query: 641 FRRCLVASFF-----LNAAIKQPDGTYRALASGQVVQIHPSSVLF-----RQKPECVIFN 690
R L + L A T ASG V++H S F + ++F+
Sbjct: 895 LRAVLAVGLYPMVGRLCPAFGNNRRTIVETASGAKVRVHSLSNNFNLSSKKYDESLLVFD 954
Query: 691 ELLQTNNK-YVRNLT 704
E+ + + ++RN T
Sbjct: 955 EITRGDGGMHIRNCT 969
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 105/241 (43%), Gaps = 47/241 (19%)
Query: 37 QKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGKVIG 96
+++ + R LPI S + + V + +++I GETG GKTTQ+PQ+L D +
Sbjct: 178 KEITKLRSKLPITSFKDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSSKRETCK 237
Query: 97 I--TQPXXXXXXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREALL 154
I TQP E G +G +GY VR + + + T+G+LLR +
Sbjct: 238 IVCTQPRRISAMSVSERISCERGESIGENIGYKVRLQSKGGRHSSVVFCTNGILLRVLVG 297
Query: 155 DPYLSKYSV---IIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVL 211
+S S IIVDE HER ++D +L +++++ + N H
Sbjct: 298 KGSVSSVSDITHIIVDEIHERDCYSDFMLAIIRDLLPS--------------NPH----- 338
Query: 212 LSDKENGQSSSSLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIF 271
L+LI+MSA+LDA F YFGG V + G +PV
Sbjct: 339 -----------------------LRLILMSATLDAERFSGYFGGCPVVRVPGFTYPVRTL 375
Query: 272 Y 272
Y
Sbjct: 376 Y 376
>AT1G58050.1 | Symbols: | RNA helicase family protein |
chr1:21478590-21487839 REVERSE LENGTH=1417
Length = 1417
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 164/322 (50%), Gaps = 11/322 (3%)
Query: 298 GDILVFLTGQEEIESVEGQIKEKLTQLPQESQKLLVAPIFAALPSEQQLRVFAPPPSGCR 357
G ILVFL G EI + ++ LL P+ +++ S +Q +VF PP G R
Sbjct: 883 GAILVFLPGMSEINMLLNRLAASYRFRGASGDWLL--PLHSSIASTEQKKVFLRPPKGIR 940
Query: 358 KVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGMESLIIVPTSKSQAMQRSGRAGR 417
KVI+ATNIAETS+TI + YVID G K Y+P K + S++ SK+ A QR GRAGR
Sbjct: 941 KVIIATNIAETSITIEDVVYVIDSGKHKENRYNPHKKLSSMVEDWVSKANARQRMGRAGR 1000
Query: 418 EGPGKCFRLYPEIEFEKL-EDSTMPEIKRCNLSNVILQLKALGVDDILGF--DFIEKPSR 474
PG CF LY FEKL +PE+ R L + L +K LG+ I F +E PS
Sbjct: 1001 VKPGHCFSLYTRHRFEKLMRPYQVPEMLRVPLVELCLHIKLLGLGQIKPFLSKALEPPSE 1060
Query: 475 AAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDPVYAKALIFASQFNCLEEMLITVA 534
+AI ++ L +GAL + L+ P+G +A+LP+D + K L++ F CL +L A
Sbjct: 1061 SAINSAILLLHKVGALEGDEELT-PLGHHLAKLPVDLLIGKMLLYGGIFGCLSPILSIAA 1119
Query: 535 MLS-VESIFYVPRDMLAESRIATKCFSSPEGDHITLINVYRASNDFL----EKRSMEMSK 589
LS +S F +D R+ S L N R S+ L ++ + +
Sbjct: 1120 FLSCCKSPFVYAKDEQNVDRVKLALLSDKLESSSNLNNNDRQSDHLLMVVAYEKWVRILH 1179
Query: 590 PKSEKVLRKWCKENFINSRSLR 611
+ K +C+ F+NS +R
Sbjct: 1180 EQGFKAAESFCESKFLNSSVMR 1201
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 134/280 (47%), Gaps = 53/280 (18%)
Query: 4 VAPGNHNHPTAATANGKFSNANRNRQTQLTPGRQK-LAQQRKSLPIASVEKRLVEEVRKH 62
V NH ++ + S+ + ++ + + K + + R +LPI+ V+K +++++++
Sbjct: 554 VVKSNHRARRNSSMAAECSSLKQKQENKKKMQKYKDMLKTRAALPISEVKKDILQKLKEK 613
Query: 63 DILIIVGETGSGKTTQIPQFLFD-------AGLCHDGKVIGITQPXXXXXXXXXXXXXEE 115
D+L++ GETGSGKTTQ+PQF+ D G C+ I TQP E
Sbjct: 614 DVLVVCGETGSGKTTQVPQFILDDMIDSGHGGYCN----IICTQP--RAITVAQRVADER 667
Query: 116 CGVELGHK---VGYSVRFDDATSSSTRIKYMTDGLLLREALLDPYLSKYSVIIVDEAHER 172
C G V Y VR +A S TR+ + T G+LLR+ + D L + IIVDE HER
Sbjct: 668 CEPPPGFDNSVVAYQVRHQNARSDKTRLLFCTTGILLRKLVGDTTLKDVTHIIVDEVHER 727
Query: 173 TVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLSDKENGQSSSSLRKDHHKKI 232
++ D LL +LK+ L +K++ ++ +
Sbjct: 728 SLMGDFLLIILKS--------------------------LIEKQSWDNA----------L 751
Query: 233 SPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIFY 272
LK+I+MSA++DA F YFG + +GR PV ++
Sbjct: 752 PKLKVILMSATVDAHQFSRYFGQCPIITAQGRTHPVTTYF 791
>AT2G47680.1 | Symbols: | zinc finger (CCCH type) helicase family
protein | chr2:19545828-19550871 REVERSE LENGTH=1015
Length = 1015
Score = 142 bits (359), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 131/452 (28%), Positives = 209/452 (46%), Gaps = 97/452 (21%)
Query: 45 SLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGLCHDGKVIGITQPXXXX 104
SLPI ++++R+++++ ++ + +IVGE G GK++Q+PQFL +A + I TQP
Sbjct: 25 SLPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLEANMA----PILCTQPRRFA 80
Query: 105 XXXXXXXXXEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREALLDPYLS--KYS 162
+ +LG ++GY + + ++I + T G+LL E +LD L+ KY
Sbjct: 81 VVAVAKMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDE-MLDKGLNALKYK 139
Query: 163 VIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLSDKENGQSSS 222
VII+DE HER+V +D++L +K +
Sbjct: 140 VIILDEVHERSVESDLVLVCVKQFLM---------------------------------- 165
Query: 223 SLRKDHHKKISPLKLIIMSASLDARAFCEYF---GGAKAVHIEGRQFPVD-IFYTRRAET 278
K + L++++MSA+ D + +YF G + V + P + RR
Sbjct: 166 --------KNNDLRVVLMSATADITRYRDYFKELGRGERVEVVAIPSPDQRTIFQRRVL- 216
Query: 279 DYLD--AALITIFQIHLAEGPG-------------------DILVFLTGQE-EIESVEGQ 316
YL+ A L+ + A PG D+++++ +E +IE
Sbjct: 217 -YLEQVAGLLGVSSDLSAYCPGPSPSSADTEIKPELQNLIHDLILYIHEKEPDIE----- 270
Query: 317 IKEKLTQLPQ----ESQKLLVAPIFA---------ALPSEQQLRVFAPPPSGCRKVILAT 363
K L LP E Q + P FA ++ +EQ L S RKVILAT
Sbjct: 271 -KSILVFLPTYYSLEQQYHQLEPFFASFEVHILHRSIDTEQALAAMKICRSR-RKVILAT 328
Query: 364 NIAETSVTIPGIKYVIDPGLVKARSYDPGKGMESLIIVPTSKSQAMQRSGRAGREGPGKC 423
NIAE+SVTIP + YVID +DP + +++ +V S+SQA QR GR GR G+
Sbjct: 329 NIAESSVTIPKVAYVIDSCRSLQVFWDPSRKRDAVQLVWVSRSQAEQRRGRTGRTCDGEV 388
Query: 424 FRLYPEIEFEKLEDSTMPEIKRCNLSNVILQL 455
+RL P F KLE+ P I + +L +L +
Sbjct: 389 YRLVPSAFFNKLEEHEPPSILKLSLRQQVLHI 420