Miyakogusa Predicted Gene

Lj1g3v3316260.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3316260.2 tr|I3T692|I3T692_LOTJA Ribulose bisphosphate
carboxylase small chain OS=Lotus japonicus PE=2
SV=1,96.13,0,RuBisCO_small,Ribulose bisphosphate carboxylase small
chain, domain; RbcS,Ribulose-1,5-bisphosphate ,CUFF.30679.2
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxylas...   274   2e-74
AT5G38430.1 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   271   2e-73
AT5G38410.1 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   271   2e-73
AT5G38420.1 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   270   5e-73
AT5G38410.3 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   266   8e-72
AT5G38410.2 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   254   3e-68
AT1G67090.2 | Symbols: RBCS1A | ribulose bisphosphate carboxylas...   147   5e-36

>AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxylase
           small chain 1A | chr1:25048465-25049249 REVERSE
           LENGTH=180
          Length = 180

 Score =  274 bits (701), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 124/166 (74%), Positives = 142/166 (85%), Gaps = 1/166 (0%)

Query: 17  ASPAQASMVAPFTGLKSMAGFP-VRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSY 75
           ASPAQA+MVAPF GLKS A FP  RK NNDITSI +NGGRV CMQVWPP+GKKKFETLSY
Sbjct: 13  ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSY 72

Query: 76  LPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGC 135
           LP LT  +L KEV+YL+R  W+PC+EFE E GFVYRE+  SPGYYDGRYWTMWKLP+FGC
Sbjct: 73  LPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGC 132

Query: 136 SDAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           +D+AQVLKE++E  K YPNAF+RIIGFDN RQVQCISFIA++P  +
Sbjct: 133 TDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSF 178


>AT5G38430.1 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15384350-15385155 REVERSE
           LENGTH=181
          Length = 181

 Score =  271 bits (693), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 123/166 (74%), Positives = 142/166 (85%), Gaps = 1/166 (0%)

Query: 17  ASPAQASMVAPFTGLKSMAGFPV-RKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSY 75
            SPAQA+MVAPFTGLKS A FPV RK NNDITSI +NGGRV CM+VWPP+GKKKFETLSY
Sbjct: 13  TSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSY 72

Query: 76  LPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGC 135
           LP LT  +L KEV+YLLR  W+PC+EFE E GFVYRE+  +PGYYDGRYWTMWKLP+FGC
Sbjct: 73  LPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGC 132

Query: 136 SDAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           +D+AQVLKE++E  K YP AF+RIIGFDN RQVQCISFIA++P  +
Sbjct: 133 TDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 178


>AT5G38410.1 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15377501-15378306 REVERSE
           LENGTH=181
          Length = 181

 Score =  271 bits (692), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 123/165 (74%), Positives = 143/165 (86%), Gaps = 1/165 (0%)

Query: 18  SPAQASMVAPFTGLKSMAGFPV-RKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYL 76
           SPAQA+MVAPFTGLKS A FPV RKTN DITSIA+NGGRV CM+VWPP+GKKKFETLSYL
Sbjct: 14  SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYL 73

Query: 77  PPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCS 136
           P L+  +L KEV+YLLR  W+PC+EFE E GFVYRE+  +PGYYDGRYWTMWKLP+FGC+
Sbjct: 74  PDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCT 133

Query: 137 DAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           D+AQVLKE++E  K YP AF+RIIGFDN RQVQCISFIA++P  +
Sbjct: 134 DSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 178


>AT5G38420.1 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15381203-15381978 REVERSE
           LENGTH=181
          Length = 181

 Score =  270 bits (689), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 122/166 (73%), Positives = 142/166 (85%), Gaps = 1/166 (0%)

Query: 17  ASPAQASMVAPFTGLKSMAGFPV-RKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSY 75
            SPAQA+MVAPFTGLKS A FPV RK NNDITSI +NGGRV CM+VWPP+GKKKFETLSY
Sbjct: 13  TSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSY 72

Query: 76  LPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGC 135
           LP L+  +L KEV+YLLR  W+PC+EFE E GFVYRE+  +PGYYDGRYWTMWKLP+FGC
Sbjct: 73  LPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGC 132

Query: 136 SDAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           +D+AQVLKE++E  K YP AF+RIIGFDN RQVQCISFIA++P  +
Sbjct: 133 TDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 178


>AT5G38410.3 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15377501-15378306 REVERSE
           LENGTH=186
          Length = 186

 Score =  266 bits (679), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 123/170 (72%), Positives = 144/170 (84%), Gaps = 6/170 (3%)

Query: 18  SPAQASMVAPFTGLKSMAGFPV-RKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYL 76
           SPAQA+MVAPFTGLKS A FPV RKTN DITSIA+NGGRV CM+VWPP+GKKKFETLSYL
Sbjct: 14  SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYL 73

Query: 77  PPLTTEQLLKEVEYLLRKGWVPCLEFE-----TEKGFVYRENHKSPGYYDGRYWTMWKLP 131
           P L+  +L KEV+YLLR  W+PC+EFE     T+ GFVYRE+  +PGYYDGRYWTMWKLP
Sbjct: 74  PDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHGNTPGYYDGRYWTMWKLP 133

Query: 132 MFGCSDAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           +FGC+D+AQVLKE++E  K YP AF+RIIGFDN RQVQCISFIA++P  +
Sbjct: 134 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 183


>AT5G38410.2 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15377501-15378306 REVERSE
           LENGTH=174
          Length = 174

 Score =  254 bits (648), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/165 (71%), Positives = 137/165 (83%), Gaps = 8/165 (4%)

Query: 18  SPAQASMVAPFTGLKSMAGFPV-RKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYL 76
           SPAQA+MVAPFTGLKS A FPV RKTN DITSIA+NGGRV CM+VWPP+GKKKFETLSYL
Sbjct: 14  SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYL 73

Query: 77  PPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCS 136
           P L+  +L KEV+YLLR  W+PC+EFE E G        +PGYYDGRYWTMWKLP+FGC+
Sbjct: 74  PDLSDVELAKEVDYLLRNKWIPCVEFELEHG-------NTPGYYDGRYWTMWKLPLFGCT 126

Query: 137 DAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           D+AQVLKE++E  K YP AF+RIIGFDN RQVQCISFIA++P  +
Sbjct: 127 DSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 171


>AT1G67090.2 | Symbols: RBCS1A | ribulose bisphosphate carboxylase
           small chain 1A | chr1:25048590-25049249 REVERSE
           LENGTH=136
          Length = 136

 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 68/99 (68%), Positives = 78/99 (78%), Gaps = 1/99 (1%)

Query: 17  ASPAQASMVAPFTGLKSMAGFP-VRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSY 75
           ASPAQA+MVAPF GLKS A FP  RK NNDITSI +NGGRV CMQVWPP+GKKKFETLSY
Sbjct: 13  ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSY 72

Query: 76  LPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENH 114
           LP LT  +L KEV+YL+R  W+PC+EF+T+   V    H
Sbjct: 73  LPDLTDSELAKEVDYLIRNKWIPCVEFDTDLCTVSTVTH 111