Miyakogusa Predicted Gene

Lj1g3v3316260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3316260.1 tr|I3T692|I3T692_LOTJA Ribulose bisphosphate
carboxylase small chain OS=Lotus japonicus PE=2
SV=1,95.58,0,RuBisCO_small,Ribulose bisphosphate carboxylase small
chain, domain; RbcS,Ribulose-1,5-bisphosphate ,CUFF.30679.1
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38410.1 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   283   3e-77
AT5G38430.1 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   282   1e-76
AT5G38420.1 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   280   5e-76
AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxylas...   279   7e-76
AT5G38410.3 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   278   1e-75
AT5G38410.2 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   266   5e-72
AT1G67090.2 | Symbols: RBCS1A | ribulose bisphosphate carboxylas...   151   2e-37

>AT5G38410.1 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15377501-15378306 REVERSE
           LENGTH=181
          Length = 181

 Score =  283 bits (725), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 133/182 (73%), Positives = 154/182 (84%), Gaps = 5/182 (2%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPV-RKTNTDITSIASNGGRVQCM 59
           MASSM++S+AV T    SPAQA MVAPFTGLKS A FPV RKTN DITSIASNGGRV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 56

Query: 60  QVWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGY 119
           +VWPP+GKKKFETLSYLP L+  +L KEV+YLLR  W+PC+EFE E GFVYRE+  +PGY
Sbjct: 57  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 116

Query: 120 YDGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPA 179
           YDGRYWTMWKLP+FGC+D+AQVLKE++E  K YP AF+RIIGFDN RQVQCISFIA++P 
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176

Query: 180 GY 181
            +
Sbjct: 177 SF 178


>AT5G38430.1 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15384350-15385155 REVERSE
           LENGTH=181
          Length = 181

 Score =  282 bits (721), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/182 (72%), Positives = 152/182 (83%), Gaps = 5/182 (2%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPV-RKTNTDITSIASNGGRVQCM 59
           MASSM++S+AV T    SPAQA MVAPFTGLKS A FPV RK N DITSI SNGGRV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 56

Query: 60  QVWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGY 119
           +VWPP+GKKKFETLSYLP LT  +L KEV+YLLR  W+PC+EFE E GFVYRE+  +PGY
Sbjct: 57  KVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 116

Query: 120 YDGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPA 179
           YDGRYWTMWKLP+FGC+D+AQVLKE++E  K YP AF+RIIGFDN RQVQCISFIA++P 
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176

Query: 180 GY 181
            +
Sbjct: 177 SF 178


>AT5G38420.1 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15381203-15381978 REVERSE
           LENGTH=181
          Length = 181

 Score =  280 bits (715), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 131/182 (71%), Positives = 151/182 (82%), Gaps = 5/182 (2%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPV-RKTNTDITSIASNGGRVQCM 59
           MASSM +S+AV T    SPAQA MVAPFTGLKS A FPV RK N DITSI SNGGRV CM
Sbjct: 1   MASSMFSSTAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 56

Query: 60  QVWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGY 119
           +VWPP+GKKKFETLSYLP L+  +L KEV+YLLR  W+PC+EFE E GFVYRE+  +PGY
Sbjct: 57  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 116

Query: 120 YDGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPA 179
           YDGRYWTMWKLP+FGC+D+AQVLKE++E  K YP AF+RIIGFDN RQVQCISFIA++P 
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176

Query: 180 GY 181
            +
Sbjct: 177 SF 178


>AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxylase
           small chain 1A | chr1:25048465-25049249 REVERSE
           LENGTH=180
          Length = 180

 Score =  279 bits (714), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 129/182 (70%), Positives = 149/182 (81%), Gaps = 5/182 (2%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFP-VRKTNTDITSIASNGGRVQCM 59
           MASSM++S+ +     ASPAQA MVAPF GLKS A FP  RK N DITSI SNGGRV CM
Sbjct: 1   MASSMLSSATMV----ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCM 56

Query: 60  QVWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGY 119
           QVWPP+GKKKFETLSYLP LT  +L KEV+YL+R  W+PC+EFE E GFVYRE+  SPGY
Sbjct: 57  QVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGY 116

Query: 120 YDGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPA 179
           YDGRYWTMWKLP+FGC+D+AQVLKE++E  K YP AF+RIIGFDN RQVQCISFIA++P 
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176

Query: 180 GY 181
            +
Sbjct: 177 SF 178


>AT5G38410.3 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15377501-15378306 REVERSE
           LENGTH=186
          Length = 186

 Score =  278 bits (712), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 133/187 (71%), Positives = 155/187 (82%), Gaps = 10/187 (5%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPV-RKTNTDITSIASNGGRVQCM 59
           MASSM++S+AV T    SPAQA MVAPFTGLKS A FPV RKTN DITSIASNGGRV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 56

Query: 60  QVWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFE-----TEKGFVYRENH 114
           +VWPP+GKKKFETLSYLP L+  +L KEV+YLLR  W+PC+EFE     T+ GFVYRE+ 
Sbjct: 57  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHG 116

Query: 115 KSPGYYDGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFI 174
            +PGYYDGRYWTMWKLP+FGC+D+AQVLKE++E  K YP AF+RIIGFDN RQVQCISFI
Sbjct: 117 NTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFI 176

Query: 175 AHRPAGY 181
           A++P  +
Sbjct: 177 AYKPPSF 183


>AT5G38410.2 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15377501-15378306 REVERSE
           LENGTH=174
          Length = 174

 Score =  266 bits (681), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 128/182 (70%), Positives = 148/182 (81%), Gaps = 12/182 (6%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPV-RKTNTDITSIASNGGRVQCM 59
           MASSM++S+AV T    SPAQA MVAPFTGLKS A FPV RKTN DITSIASNGGRV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 56

Query: 60  QVWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGY 119
           +VWPP+GKKKFETLSYLP L+  +L KEV+YLLR  W+PC+EFE E G        +PGY
Sbjct: 57  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHG-------NTPGY 109

Query: 120 YDGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPA 179
           YDGRYWTMWKLP+FGC+D+AQVLKE++E  K YP AF+RIIGFDN RQVQCISFIA++P 
Sbjct: 110 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 169

Query: 180 GY 181
            +
Sbjct: 170 SF 171


>AT1G67090.2 | Symbols: RBCS1A | ribulose bisphosphate carboxylase
           small chain 1A | chr1:25048590-25049249 REVERSE
           LENGTH=136
          Length = 136

 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/115 (64%), Positives = 86/115 (74%), Gaps = 5/115 (4%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFP-VRKTNTDITSIASNGGRVQCM 59
           MASSM++S+ +     ASPAQA MVAPF GLKS A FP  RK N DITSI SNGGRV CM
Sbjct: 1   MASSMLSSATMV----ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCM 56

Query: 60  QVWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENH 114
           QVWPP+GKKKFETLSYLP LT  +L KEV+YL+R  W+PC+EF+T+   V    H
Sbjct: 57  QVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFDTDLCTVSTVTH 111