Miyakogusa Predicted Gene
- Lj1g3v3315220.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3315220.1 Non Chatacterized Hit- tr|D9J002|D9J002_HEVBR
Putative uncharacterized protein OS=Hevea
brasiliensis,46.43,6e-19,seg,NULL,CUFF.30317.1
(111 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G16110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 91 2e-19
AT3G02555.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 77 2e-15
AT1G13390.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 71 1e-13
AT1G13390.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 71 1e-13
AT1G68490.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 71 2e-13
>AT5G16110.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast
hits to 133 proteins in 18 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr5:5261171-5262668 REVERSE LENGTH=244
Length = 244
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
Query: 1 MNYYNLQQNALSSCEEMRSTLPIADQNGPVVCPKPRRVGALMNMPVQPXXXXXXXXXXXX 60
MN+ NLQQNA S EEM D+ VVCPKPRRVG L N ++P
Sbjct: 67 MNHCNLQQNAFMSREEMMGF----DRKDLVVCPKPRRVGLLANNVIRPLRLHMSQAAADL 122
Query: 61 -XXKAGAELLDIIHNRESSGEEFANQIASSPYFIGSPPARATNPLTQDARF 110
KAGAELL+II +E +G +S PYF GSPP+RA NPL QDARF
Sbjct: 123 CDSKAGAELLEIIRRKEDNGTIGQLLSSSPPYFPGSPPSRAANPLAQDARF 173
>AT3G02555.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G16110.1); Has 130 Blast hits to 130 proteins
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:540024-540955 REVERSE
LENGTH=162
Length = 162
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 1 MNYYNLQQNALSSCEEMRSTLPIADQ-NGPVVCPKPRRVGALMNMPVQPXXXXXXXXXXX 59
MN+ +LQQNA S EE R +PI VVCPKPRR ++ P +
Sbjct: 1 MNHCSLQQNAFLSREESRGFVPIYSHPVDSVVCPKPRRANNVIR-PFR-LHFSLSGADDV 58
Query: 60 XXXKAGAELLDIIHNRESSGEEFANQIASSPYFIGSPPARATNPLTQDARFG 111
KAG +LLDI +ES S P+F+GSPP+RA NPL QDARFG
Sbjct: 59 CDSKAGEDLLDIFRRKESVSSR------SPPFFLGSPPSRAANPLAQDARFG 104
>AT1G13390.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G68490.1); Has 114 Blast hits to 114 proteins
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:4592829-4593549 REVERSE
LENGTH=176
Length = 176
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 1 MNYYNLQQNALSSCEEMRSTLPIADQNGPVVCPKPRRVGALMNMPVQPXXXXXXXXXXXX 60
MN +QQNA EEMR ++D+ V+CPKPRRVGAL + +
Sbjct: 2 MNSCGIQQNAF---EEMRRNAAVSDRRDAVICPKPRRVGALNHHSSRSLRWQLNHQMELC 58
Query: 61 XXKAGAELLDIIHNR--ESSGEEFANQIASSP--YFIGSPPARATNPLTQDARF 110
+G+E+LD I + GE+ + +P +F GSPP+R +NPLT+D+ F
Sbjct: 59 ESNSGSEILDFILTKGGGGGGEQDQTRTVMTPPLFFTGSPPSRVSNPLTKDSLF 112
>AT1G13390.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G68490.1); Has 114 Blast hits to 114 proteins
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:4592829-4593549 REVERSE
LENGTH=176
Length = 176
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 1 MNYYNLQQNALSSCEEMRSTLPIADQNGPVVCPKPRRVGALMNMPVQPXXXXXXXXXXXX 60
MN +QQNA EEMR ++D+ V+CPKPRRVGAL + +
Sbjct: 2 MNSCGIQQNAF---EEMRRNAAVSDRRDAVICPKPRRVGALNHHSSRSLRWQLNHQMELC 58
Query: 61 XXKAGAELLDIIHNR--ESSGEEFANQIASSP--YFIGSPPARATNPLTQDARF 110
+G+E+LD I + GE+ + +P +F GSPP+R +NPLT+D+ F
Sbjct: 59 ESNSGSEILDFILTKGGGGGGEQDQTRTVMTPPLFFTGSPPSRVSNPLTKDSLF 112
>AT1G68490.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast
hits to 125 proteins in 18 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr1:25693926-25694946 FORWARD LENGTH=183
Length = 183
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query: 1 MNYYNLQQNALSSCEEMRST-LPIADQN-GPVVCPKPRRVGALMNM--PVQPXXXXXXXX 56
MN++ +Q NA ++ ++RS+ + + +++ VVCPKPRR+G N P +
Sbjct: 1 MNHFAVQPNAFAAGGDLRSSSVSVVERDQTTVVCPKPRRIGLRNNHHHPSRSLRCYFSHQ 60
Query: 57 XXXXXXKAGAELLDIIHNRESSGEEFANQ--IAS-SPYFIGSPPARATNPLTQDARF 110
KA ++LDII ++ G E N+ I S SP+ GSPP+R NPLTQDARF
Sbjct: 61 LELCESKAETDILDIILTKDGYGAEQVNKQVIDSPSPFLCGSPPSRVANPLTQDARF 117