Miyakogusa Predicted Gene

Lj1g3v3289940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3289940.1 tr|B9NC75|B9NC75_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_747167 PE=4
SV=1,37.87,6e-19,seg,NULL; WAK_assoc,NULL,gene.g34336.t1.1
         (186 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38210.1 | Symbols:  | Protein kinase family protein | chr5:1...    58   4e-09
AT1G66940.1 | Symbols:  | protein kinase-related | chr1:24973201...    55   2e-08
AT1G66940.3 | Symbols:  | protein kinase-related | chr1:24973596...    55   3e-08
AT1G66940.2 | Symbols:  | protein kinase-related | chr1:24973596...    55   3e-08
AT1G66880.1 | Symbols:  | Protein kinase superfamily protein | c...    54   7e-08
AT5G38260.1 | Symbols:  | Protein kinase superfamily protein | c...    48   4e-06

>AT5G38210.1 | Symbols:  | Protein kinase family protein |
           chr5:15261035-15265376 FORWARD LENGTH=686
          Length = 686

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 21/179 (11%)

Query: 3   LNDVRYKVLEAKPDEKSLRVTRVDYLQELCPSIFVNTSLDPKLFVLESQYQNLTLFYDCV 62
           ++ + Y+VLE      +L++ R D+    C + F   +L P+LF L   Y+ L+ +Y C 
Sbjct: 82  ISSLMYRVLEVNTTTSTLKLVRQDFSGPFCSASFSGATLTPELFELLPDYKTLSAYYLCN 141

Query: 63  VPNAVP--FPCVPNSGSGQHVYAQL------GSFDFTSMFCKQSXXXXXXXXXXDITDVN 114
                P  F C PN G G      L      G F+ T                    +V 
Sbjct: 142 PSLHYPAKFIC-PNKGVGSIHQDDLYHNHCGGIFNIT--------VPIGYAPEEGALNVT 192

Query: 115 KTLSAIRNGFVVNWIAGIQECEECRKAGGVCGYDSIRPTCYCRERDQT---CPEELPSS 170
              S ++ GF V      + C+EC+  GG+C Y    P C C+    +   C   +PS 
Sbjct: 193 NLESVLKKGFEVKLSIDERPCQECKTNGGICAYHVATPVC-CKTNSSSEVNCTPMMPSG 250


>AT1G66940.1 | Symbols:  | protein kinase-related |
           chr1:24973201-24974684 REVERSE LENGTH=332
          Length = 332

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 16/164 (9%)

Query: 3   LNDVRYKVLEAKPDEKSLRVTRVDYLQELCPSIFVNTSLDPKLFVLESQYQNLTLFYDC- 61
           +++ +Y VL       +L + + + L   C S+F NT+L P+ F L   Y+++T+FY C 
Sbjct: 76  ISNQKYSVLRIDQTSNTLTLAKQNLLGSFCSSVFTNTTLPPETFELSRTYKSVTIFYQCS 135

Query: 62  -VVPNAVPFPCVPNSG-----SGQHVYAQLGSFDFTSMFCKQSXXXXXXXXXXDITDVNK 115
            V+PN   + C P  G          Y +     FT    K            ++T++  
Sbjct: 136 SVLPNLSSYTC-PEIGPISVSESPEKYPESCRSSFT---VKVPTSFDTKEKELNVTNLE- 190

Query: 116 TLSAIRNGFVVNWIAGIQECEECRKAGGVCGY--DSIRPTCYCR 157
             S +R GF V  +     C+EC  + G C    +++ P   CR
Sbjct: 191 --SVLRKGFEVTVVINENTCQECLSSLGRCHVFNENLTPGVKCR 232


>AT1G66940.3 | Symbols:  | protein kinase-related |
           chr1:24973596-24974684 REVERSE LENGTH=309
          Length = 309

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 16/164 (9%)

Query: 3   LNDVRYKVLEAKPDEKSLRVTRVDYLQELCPSIFVNTSLDPKLFVLESQYQNLTLFYDC- 61
           +++ +Y VL       +L + + + L   C S+F NT+L P+ F L   Y+++T+FY C 
Sbjct: 76  ISNQKYSVLRIDQTSNTLTLAKQNLLGSFCSSVFTNTTLPPETFELSRTYKSVTIFYQCS 135

Query: 62  -VVPNAVPFPCVPNSG-----SGQHVYAQLGSFDFTSMFCKQSXXXXXXXXXXDITDVNK 115
            V+PN   + C P  G          Y +     FT    K            ++T++  
Sbjct: 136 SVLPNLSSYTC-PEIGPISVSESPEKYPESCRSSFT---VKVPTSFDTKEKELNVTNLE- 190

Query: 116 TLSAIRNGFVVNWIAGIQECEECRKAGGVCGY--DSIRPTCYCR 157
             S +R GF V  +     C+EC  + G C    +++ P   CR
Sbjct: 191 --SVLRKGFEVTVVINENTCQECLSSLGRCHVFNENLTPGVKCR 232


>AT1G66940.2 | Symbols:  | protein kinase-related |
           chr1:24973596-24974684 REVERSE LENGTH=309
          Length = 309

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 16/164 (9%)

Query: 3   LNDVRYKVLEAKPDEKSLRVTRVDYLQELCPSIFVNTSLDPKLFVLESQYQNLTLFYDC- 61
           +++ +Y VL       +L + + + L   C S+F NT+L P+ F L   Y+++T+FY C 
Sbjct: 76  ISNQKYSVLRIDQTSNTLTLAKQNLLGSFCSSVFTNTTLPPETFELSRTYKSVTIFYQCS 135

Query: 62  -VVPNAVPFPCVPNSG-----SGQHVYAQLGSFDFTSMFCKQSXXXXXXXXXXDITDVNK 115
            V+PN   + C P  G          Y +     FT    K            ++T++  
Sbjct: 136 SVLPNLSSYTC-PEIGPISVSESPEKYPESCRSSFT---VKVPTSFDTKEKELNVTNLE- 190

Query: 116 TLSAIRNGFVVNWIAGIQECEECRKAGGVCGY--DSIRPTCYCR 157
             S +R GF V  +     C+EC  + G C    +++ P   CR
Sbjct: 191 --SVLRKGFEVTVVINENTCQECLSSLGRCHVFNENLTPGVKCR 232


>AT1G66880.1 | Symbols:  | Protein kinase superfamily protein |
           chr1:24946928-24955438 FORWARD LENGTH=1296
          Length = 1296

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 11/150 (7%)

Query: 8   YKVLEAKPDEKSLRVTRVDYLQELCPSIFVNTSLDPKLFVLESQYQNLTLFYDC-VVPNA 66
           + VL      K+L++ R D L  +C S F   +L P +F L   Y+ LT+FY C ++ + 
Sbjct: 67  FYVLHLNQTSKTLKLARTDLLGSICNSTFTTITLPPNIFELSPTYKRLTVFYYCFLLTHY 126

Query: 67  VPFPCVPNSG----SGQHVYAQLGSFDFTSMFCKQSXXXXXXXXXXDITDVNKTLSAIRN 122
           V     P  G    S  H Y ++    FT +   +           ++T++   LS    
Sbjct: 127 VSSYKCPMRGFIFVSENHEYHKICGDTFTVIVPTR---FGAGEKELNMTNLESVLS---K 180

Query: 123 GFVVNWIAGIQECEECRKAGGVCGYDSIRP 152
           GF V        C+EC  + G CG++   P
Sbjct: 181 GFEVKVKIDDTSCQECLSSHGSCGFNETLP 210



 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 22/160 (13%)

Query: 3   LNDVRYKVLEAKPDEKSLRVTRVDYLQELCPSIFVNTSLDPKLFVLESQYQNLTLFYDC- 61
           ++D  + VL       SL + R D L   C   F NT+L P++F L   Y+++T FY C 
Sbjct: 254 ISDQEFFVLHVDQTSYSLTLARPDLLHSFCSLTFTNTTLPPEIFELSPAYKSVT-FYHCY 312

Query: 62  -VVPNAVPFPC---VPNSGSG-----QHVYAQLGSFDFTSMFCKQSXXXXXXXXXXDITD 112
            V+P+   + C    P S SG     +  +    +   TS   K+              +
Sbjct: 313 PVLPDLSNYTCPVIGPISVSGNPEDHETCFPNFAANVPTSFVTKEKKL-----------N 361

Query: 113 VNKTLSAIRNGFVVNWIAGIQECEECRKAGGVCGYDSIRP 152
           +    S +  GF VN    ++ C+ C  +   CG+D   P
Sbjct: 362 IANLESVLEKGFEVNMNVIMKACQACSYSNESCGFDENFP 401


>AT5G38260.1 | Symbols:  | Protein kinase superfamily protein |
           chr5:15283692-15285837 REVERSE LENGTH=638
          Length = 638

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 19/182 (10%)

Query: 1   MNLNDVRYKVLEAKPDEKSLRVTRVDYLQELCPSIFVNTSLDPKLFVLESQYQNLTLFYD 60
             ++ V++ VLE   + + +R+ R +YL  LCP    N S++ ++       +  T +Y+
Sbjct: 77  FTISTVKFHVLEMNYESRIIRLVRTEYLNNLCPWHPENRSINQEVLPFLQDTELGTFYYN 136

Query: 61  CVVPNAVPFP--------CVPNSGSGQHVYA------QLGSFDFTSMFCKQSXXXXXXXX 106
           C  P              C    G   +  +           D  S  C+++        
Sbjct: 137 CSGPTVDELANGYIRQLGCDEEVGGKSYFVSSPSHPGNRAILDGLSASCERNVDIPVSRS 196

Query: 107 XXDITDVNKTLSAIRNGFVVNWIAGIQ-ECEECRKAGGVCGYD--SIRPTCYCRE--RDQ 161
             + T  N++L AI+    V +  G   +C  C  + G CG++  S    CYC++   + 
Sbjct: 197 AMETTATNQSLEAIKKVLDVGFELGFNSDCSLCVASKGACGFNQSSKAFVCYCKDEPHEH 256

Query: 162 TC 163
           TC
Sbjct: 257 TC 258