Miyakogusa Predicted Gene

Lj1g3v3278870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3278870.1 Non Chatacterized Hit- tr|I1HFL5|I1HFL5_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,71.7,0.000000000000005,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; LISH,LisH dimerisation motif,CUFF.30296.1
         (58 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16210.1 | Symbols:  | HEAT repeat-containing protein | chr5:...   106   4e-24

>AT5G16210.1 | Symbols:  | HEAT repeat-containing protein |
          chr5:5290999-5297779 REVERSE LENGTH=1180
          Length = 1180

 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/58 (84%), Positives = 53/58 (91%)

Query: 1  MDVERSSLCNCVVNFLLEENYVLTAFELLHELLDDGRDDQAIRLKQYFSDPSLFPPDQ 58
          MD ERSSLCN  VNFL+EENY+LTAFELLHELLDDGRD QAIRLK++FSDPS FPPDQ
Sbjct: 1  MDAERSSLCNFFVNFLMEENYLLTAFELLHELLDDGRDAQAIRLKEFFSDPSRFPPDQ 58