Miyakogusa Predicted Gene
- Lj1g3v3255670.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3255670.1 tr|B9GLX4|B9GLX4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_547790 PE=4 SV=1,47.06,2e-18,
,CUFF.30267.1
(154 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12320.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 70 4e-13
AT5G06980.4 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 62 1e-10
AT5G64170.2 | Symbols: | dentin sialophosphoprotein-related | c... 59 1e-09
AT5G64170.1 | Symbols: | dentin sialophosphoprotein-related | c... 59 1e-09
AT5G06980.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 56 1e-08
AT3G54500.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 49 2e-06
AT3G54500.4 | Symbols: | FUNCTIONS IN: molecular_function unkno... 49 2e-06
AT3G54500.2 | Symbols: | BEST Arabidopsis thaliana protein matc... 49 2e-06
AT3G54500.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 48 2e-06
>AT3G12320.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G06980.4); Has 102 Blast hits to 102 proteins
in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink). | chr3:3924034-3925262 FORWARD
LENGTH=269
Length = 269
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 3 EESSVEESALQDLESIISQFTEKTRIGFRDALYRLARST--KQQHVREDLDGDLNMQQAM 60
+E S EE LQDL+ + T++TR FRD YRLARS+ K V + + +L MQ +
Sbjct: 163 DELSSEEFVLQDLQRASQKLTDETRKCFRDTFYRLARSSQDKSDSVSPNSE-ELLMQTS- 220
Query: 61 ARVVQNETRRFKDKKPMESETNSVDRAVANLMFRKMEINALETP 104
R + RF ++ +ESETNS+DRAVANL F KME N P
Sbjct: 221 -RYDYGDGNRFSREEEIESETNSIDRAVANLTFNKMESNISNFP 263
>AT5G06980.4 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: response to
karrikin; LOCATED IN: cellular_component unknown;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G12320.1). |
chr5:2167799-2169110 FORWARD LENGTH=279
Length = 279
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 3 EESSVEESALQDLESIISQFTEKTRIGFRDALYRLARSTKQQHVREDLDGDLNMQQAMAR 62
EE+S EE LQDL+ T+ TR FRD YRLA++++Q + D + D ++ +
Sbjct: 171 EEASAEEVVLQDLQRATEMLTDDTRKCFRDTFYRLAKNSQQ---KSDSNSDEFLEDRTSS 227
Query: 63 VVQNETRRFKDKKPMESETNSVDRAVANLMFRKMEINALETP 104
+ + F + + NS+DRAVANL F KME N P
Sbjct: 228 NDSSPSMTFLSVGKLNLKPNSIDRAVANLTFNKMESNMRNMP 269
>AT5G64170.2 | Symbols: | dentin sialophosphoprotein-related |
chr5:25672904-25675934 REVERSE LENGTH=616
Length = 616
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 6 SVEESALQDLESIISQFTEKTRIGFRDALYRLARSTKQQHVREDLDGDLNMQQAMARVVQ 65
S+E ++ + L+ +I Q +T++ RD+LYRLA+S +Q+H G+ + A + +V
Sbjct: 478 SLEATSFRQLQQVIEQLDVRTKLCIRDSLYRLAKSAEQRH----HGGNRPEKGAGSHLVT 533
Query: 66 NETRRFKDKKPMESETNSVDRAVANLMFRK 95
E ++ +E++TN +DR++A+L+F +
Sbjct: 534 GEADKYAGFMDIETDTNPIDRSIAHLLFHR 563
>AT5G64170.1 | Symbols: | dentin sialophosphoprotein-related |
chr5:25672904-25675445 REVERSE LENGTH=566
Length = 566
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 6 SVEESALQDLESIISQFTEKTRIGFRDALYRLARSTKQQHVREDLDGDLNMQQAMARVVQ 65
S+E ++ + L+ +I Q +T++ RD+LYRLA+S +Q+H G+ + A + +V
Sbjct: 428 SLEATSFRQLQQVIEQLDVRTKLCIRDSLYRLAKSAEQRH----HGGNRPEKGAGSHLVT 483
Query: 66 NETRRFKDKKPMESETNSVDRAVANLMFRK 95
E ++ +E++TN +DR++A+L+F +
Sbjct: 484 GEADKYAGFMDIETDTNPIDRSIAHLLFHR 513
>AT5G06980.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: response to
karrikin; LOCATED IN: cellular_component unknown;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G12320.1). |
chr5:2167799-2169110 FORWARD LENGTH=266
Length = 266
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
Query: 3 EESSVEESALQDLESIISQFTEKTRIGFRDALYRLARSTKQQHVREDLDGDLNMQQAMAR 62
EE+S EE LQDL+ T+ TR FRD YRLA++++Q
Sbjct: 172 EEASAEEVVLQDLQRATEMLTDDTRKCFRDTFYRLAKNSQQNSND--------------- 216
Query: 63 VVQNETRRFKDKKPMESETNSVDRAVANLMFRKMEINALETP 104
+ + F + + NS+DRAVANL F KME N P
Sbjct: 217 --SSPSMTFLSVGKLNLKPNSIDRAVANLTFNKMESNMRNMP 256
>AT3G54500.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: dentin
sialophosphoprotein-related (TAIR:AT5G64170.1). |
chr3:20175792-20178482 REVERSE LENGTH=669
Length = 669
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 4 ESSVEESALQDLESIISQFTEKTRIGFRDALYRLARSTKQQHVREDLDGDLNMQQAMARV 63
++S E + L L+ ++++ TR RD+L+RLA S Q+H D Q V
Sbjct: 493 DNSAEFAVLYRLQDVVAKLDMGTRTCIRDSLFRLAGSAAQRHYTSDTSHSNKTSQDDQEV 552
Query: 64 VQNETRRFK--DKKPMESETNSVDRAVANLMFRK 95
+ E R++ E+ TN DR VA+L+F +
Sbjct: 553 IPREESRYRYAGMPDTEAVTNPTDRTVAHLLFHR 586
>AT3G54500.4 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: dentin
sialophosphoprotein-related (TAIR:AT5G64170.2). |
chr3:20175792-20178737 REVERSE LENGTH=663
Length = 663
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 4 ESSVEESALQDLESIISQFTEKTRIGFRDALYRLARSTKQQHVREDLDGDLNMQQAMARV 63
++S E + L L+ ++++ TR RD+L+RLA S Q+H D Q V
Sbjct: 487 DNSAEFAVLYRLQDVVAKLDMGTRTCIRDSLFRLAGSAAQRHYTSDTSHSNKTSQDDQEV 546
Query: 64 VQNETRRFK--DKKPMESETNSVDRAVANLMFRK 95
+ E R++ E+ TN DR VA+L+F +
Sbjct: 547 IPREESRYRYAGMPDTEAVTNPTDRTVAHLLFHR 580
>AT3G54500.2 | Symbols: | BEST Arabidopsis thaliana protein match
is: dentin sialophosphoprotein-related
(TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins
in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23;
Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes
- 10 (source: NCBI BLink). | chr3:20175792-20178275
REVERSE LENGTH=569
Length = 569
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 4 ESSVEESALQDLESIISQFTEKTRIGFRDALYRLARSTKQQHVREDLDGDLNMQQAMARV 63
++S E + L L+ ++++ TR RD+L+RLA S Q+H D Q V
Sbjct: 393 DNSAEFAVLYRLQDVVAKLDMGTRTCIRDSLFRLAGSAAQRHYTSDTSHSNKTSQDDQEV 452
Query: 64 VQNETRRFK--DKKPMESETNSVDRAVANLMFRK 95
+ E R++ E+ TN DR VA+L+F +
Sbjct: 453 IPREESRYRYAGMPDTEAVTNPTDRTVAHLLFHR 486
>AT3G54500.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: dentin sialophosphoprotein-related
(TAIR:AT5G64170.1); Has 183 Blast hits to 175 proteins
in 44 species: Archae - 0; Bacteria - 4; Metazoa - 38;
Fungi - 11; Plants - 120; Viruses - 0; Other Eukaryotes
- 10 (source: NCBI BLink). | chr3:20175792-20178737
REVERSE LENGTH=648
Length = 648
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 4 ESSVEESALQDLESIISQFTEKTRIGFRDALYRLARSTKQQHVREDLDGDLNMQQAMARV 63
++S E + L L+ ++++ TR RD+L+RLA S Q+H D Q V
Sbjct: 472 DNSAEFAVLYRLQDVVAKLDMGTRTCIRDSLFRLAGSAAQRHYTSDTSHSNKTSQDDQEV 531
Query: 64 VQNETRRFK--DKKPMESETNSVDRAVANLMFRK 95
+ E R++ E+ TN DR VA+L+F +
Sbjct: 532 IPREESRYRYAGMPDTEAVTNPTDRTVAHLLFHR 565