Miyakogusa Predicted Gene

Lj1g3v3254660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3254660.1 Non Chatacterized Hit- tr|K3YJA2|K3YJA2_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si014321,43.14,1e-17,zf-met,NULL; seg,NULL;
coiled-coil,NULL,CUFF.30281.1
         (225 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60640.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    68   5e-12
AT1G60640.1 | Symbols:  | unknown protein; Has 42416 Blast hits ...    68   5e-12
AT1G60640.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    68   5e-12
AT1G60640.5 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    67   7e-12
AT1G60640.4 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    67   7e-12

>AT1G60640.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr1:22337534-22339513 REVERSE LENGTH=340
          Length = 340

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 41/53 (77%), Gaps = 4/53 (7%)

Query: 106 SYILQC----KSVFKCRICPRIICLSEDTLRDHLQSKRHARSEKLYKQGRLKA 154
           +YIL C    KSV+KCR CP ++CL+E+T++ H+ SK+HAR EKL K+G+++ 
Sbjct: 102 NYILGCMIQSKSVYKCRYCPTVVCLNENTMQAHVSSKKHARMEKLVKEGKIRT 154


>AT1G60640.1 | Symbols:  | unknown protein; Has 42416 Blast hits to
           22533 proteins in 1340 species: Archae - 32; Bacteria -
           6461; Metazoa - 16431; Fungi - 3749; Plants - 1747;
           Viruses - 284; Other Eukaryotes - 13712 (source: NCBI
           BLink). | chr1:22337534-22339513 REVERSE LENGTH=340
          Length = 340

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 41/53 (77%), Gaps = 4/53 (7%)

Query: 106 SYILQC----KSVFKCRICPRIICLSEDTLRDHLQSKRHARSEKLYKQGRLKA 154
           +YIL C    KSV+KCR CP ++CL+E+T++ H+ SK+HAR EKL K+G+++ 
Sbjct: 102 NYILGCMIQSKSVYKCRYCPTVVCLNENTMQAHVSSKKHARMEKLVKEGKIRT 154


>AT1G60640.3 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown. | chr1:22337534-22339513
           REVERSE LENGTH=339
          Length = 339

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 41/53 (77%), Gaps = 4/53 (7%)

Query: 106 SYILQC----KSVFKCRICPRIICLSEDTLRDHLQSKRHARSEKLYKQGRLKA 154
           +YIL C    KSV+KCR CP ++CL+E+T++ H+ SK+HAR EKL K+G+++ 
Sbjct: 102 NYILGCMIQSKSVYKCRYCPTVVCLNENTMQAHVSSKKHARMEKLVKEGKIRT 154


>AT1G60640.5 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown. | chr1:22337534-22339513
           REVERSE LENGTH=298
          Length = 298

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 41/53 (77%), Gaps = 4/53 (7%)

Query: 106 SYILQC----KSVFKCRICPRIICLSEDTLRDHLQSKRHARSEKLYKQGRLKA 154
           +YIL C    KSV+KCR CP ++CL+E+T++ H+ SK+HAR EKL K+G+++ 
Sbjct: 102 NYILGCMIQSKSVYKCRYCPTVVCLNENTMQAHVSSKKHARMEKLVKEGKIRT 154


>AT1G60640.4 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown. | chr1:22337534-22339513
           REVERSE LENGTH=298
          Length = 298

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 41/53 (77%), Gaps = 4/53 (7%)

Query: 106 SYILQC----KSVFKCRICPRIICLSEDTLRDHLQSKRHARSEKLYKQGRLKA 154
           +YIL C    KSV+KCR CP ++CL+E+T++ H+ SK+HAR EKL K+G+++ 
Sbjct: 102 NYILGCMIQSKSVYKCRYCPTVVCLNENTMQAHVSSKKHARMEKLVKEGKIRT 154