Miyakogusa Predicted Gene
- Lj1g3v3244630.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3244630.1 tr|G7KV95|G7KV95_MEDTR DNA ligase OS=Medicago
truncatula GN=MTR_7g082860 PE=4 SV=1,69.82,0,seg,NULL; DNA CROSS-LINK
REPAIR PROTEIN PSO2/SNM1,NULL; DNA CROSS-LINK REPAIR PROTEIN
PSO2/SNM1-RELA,CUFF.30264.1
(550 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G66730.1 | Symbols: AtLIG6, LIG6 | DNA LIGASE 6 | chr1:248849... 450 e-126
AT2G45700.1 | Symbols: | sterile alpha motif (SAM) domain-conta... 118 1e-26
AT3G26680.3 | Symbols: SNM1 | DNA repair metallo-beta-lactamase ... 113 4e-25
AT3G26680.2 | Symbols: SNM1 | DNA repair metallo-beta-lactamase ... 113 4e-25
AT3G26680.1 | Symbols: SNM1, ATSNM1 | DNA repair metallo-beta-la... 113 4e-25
AT1G27410.1 | Symbols: | DNA repair metallo-beta-lactamase fami... 66 5e-11
AT5G17360.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 62 8e-10
>AT1G66730.1 | Symbols: AtLIG6, LIG6 | DNA LIGASE 6 |
chr1:24884991-24891823 FORWARD LENGTH=1396
Length = 1396
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 252/545 (46%), Positives = 336/545 (61%), Gaps = 51/545 (9%)
Query: 1 MLAEPALAPFVGADAVFLDTTYCHPKFVFPAQEESVDYVVNVVGECDGDDVLFLVATYVV 60
M +P L FVG D VFLDTTYC+PKFVFP+QEESV YVV+V+ + + VLFLVATYVV
Sbjct: 180 MRFDPFLNGFVGCDGVFLDTTYCNPKFVFPSQEESVGYVVSVIDKISEEKVLFLVATYVV 239
Query: 61 GKERILLELARRFNKKVLVDARKMEVLRVLGYGESSEFTEDGLETNIHVVGWNVLGETWP 120
GKE+IL+E+ARR +K++VDARKM +L VLG GE FTED E+++HVVGWNVLGETWP
Sbjct: 240 GKEKILVEIARRCKRKIVVDARKMSMLSVLGCGEEGMFTEDENESDVHVVGWNVLGETWP 299
Query: 121 YFRPDFVKMKDIMTERGYSKVVGFVPTGWTYEVKRSRFAVKSKDSCQIHLVPYSEHSNYE 180
YFRP+FVKM +IM E+GY KVVGFVPTGWTYEVKR++FAV+ KDS +IHLVPYSEHSNY+
Sbjct: 300 YFRPNFVKMNEIMVEKGYDKVVGFVPTGWTYEVKRNKFAVRFKDSMEIHLVPYSEHSNYD 359
Query: 181 ELREYVKFLKPKQVIPTVGLDVEKSDSKHANKMRKYFAGLVDETANKQEFLKGFRRGTSE 240
ELRE++KFLKPK+VIPTVG+D+EK D K NKM+K+F+GLVDE ANK++FL GF R + +
Sbjct: 360 ELREFIKFLKPKRVIPTVGVDIEKFDCKEVNKMQKHFSGLVDEMANKKDFLLGFYRQSYQ 419
Query: 241 VGLKGEKDVSDVLEQGQIQEKEVKPSDADGE---TCAKDPTLLND--EEKEKIIQELSCC 295
K + DV V ++ E+E K + DG ++ P L + +++ +L
Sbjct: 420 KNEKSDVDV--VSHSAEVYEEEEKNACEDGGENVPSSRGPILHDTTPSSDSRLLIKLRDS 477
Query: 296 LPSWVTRSQVLDLISISGSNIVEAVSNFYERETEFHDQVNXXXXXXXXXXXXXXXXXXXL 355
LP+WVT Q+LDLI N V+ VSNFYE E E + Q + L
Sbjct: 478 LPAWVTEEQMLDLIKKHAGNPVDIVSNFYEYEAELYKQAS-------------------L 518
Query: 356 PKSCLNTNSTPLSVDIFPSQDS----------------KLTKLRNTVPSRISPAKRXXXX 399
P LN + D+ Q + L + N ISP KR
Sbjct: 519 PTPSLNNQAVLFDDDVTDLQPNPVKGICPDVQAIQKGFDLPRKMNLTKGTISPGKRGKSS 578
Query: 400 XXXXXXXXXXXXXXX-XXXXQSTITRFFGKVTPEVPGGTHSDHAGSKLDESPKVEELLQS 458
Q T+ +FF KV + GG++S GS+ +E ++++
Sbjct: 579 GSKSNKKAKKDPKSKPVGPGQPTLFKFFNKV---LDGGSNSVSVGSETEECNTDKKMVHI 635
Query: 459 DVEKLYKDEIDQFMQIINGNESLKRDAITIIKKAKGDVNKALDIYYCN-----SGHLGEN 513
D + YK+ DQF+ I+NG+ESL+ A +II +AKGD+++AL+IYY H GE
Sbjct: 636 DASEAYKEVTDQFIDIVNGSESLRDYAASIIDEAKGDISRALNIYYSKPREIPGDHAGER 695
Query: 514 EISAQ 518
+S++
Sbjct: 696 GLSSK 700
>AT2G45700.1 | Symbols: | sterile alpha motif (SAM)
domain-containing protein | chr2:18827216-18830505
REVERSE LENGTH=723
Length = 723
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 108/194 (55%), Gaps = 15/194 (7%)
Query: 15 AVFLDTTYCHPKFVFPAQEESVDYVVNVV-GECDGDDVLFLVATYVVGKERILLELARRF 73
++ LDTTYC+P++ FP QE + +VV + E LFL+ +Y +GKER+ LE+AR
Sbjct: 524 SLILDTTYCNPQYDFPKQEAVIQFVVEAIQAEAFNPKTLFLIGSYTIGKERLFLEVARVL 583
Query: 74 NKKVLVDARKMEVLRVLGYGES--SEFTEDGLETNIHVVGWNVLGETWPYFRPDFVKMKD 131
+K+ ++ K+++L LG+ + FT E++IHVV L F ++K
Sbjct: 584 REKIYINPAKLKLLECLGFSKDDIQWFTVKEEESHIHVVPLWTLAS--------FKRLKH 635
Query: 132 IMTE--RGYSKVVGFVPTGWTYEVKRSRFAVKSKDSCQI--HLVPYSEHSNYEELREYVK 187
+ YS +V F PTGWT + + + I + VPYSEHS++ EL+E+V+
Sbjct: 636 VANRYTNRYSLIVAFSPTGWTSGKTKKKSPGRRLQQGTIIRYEVPYSEHSSFTELKEFVQ 695
Query: 188 FLKPKQVIPTVGLD 201
+ P+ +IP+V D
Sbjct: 696 KVSPEVIIPSVNND 709
>AT3G26680.3 | Symbols: SNM1 | DNA repair metallo-beta-lactamase
family protein | chr3:9801309-9803517 FORWARD LENGTH=484
Length = 484
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 105/190 (55%), Gaps = 14/190 (7%)
Query: 16 VFLDTTYCHPKFVFPAQEESVDYVVNVVGEC--DGDDVLFLVATYVVGKERILLELARRF 73
++LDTTYC+P++ FP++E+ + YVV + + L +V +Y +GKE + L +A+
Sbjct: 281 LYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIVVGSYSIGKECVYLAIAKAL 340
Query: 74 NKKVLVDARKMEVLRVLGYGE-SSEFTEDGLETNIHVVGWNVLGETWPYFRPDFVKMKDI 132
K+ +A + +L+ G+ + S + DG T +HV+ + L + + +
Sbjct: 341 GVKIFANASRRRILQSFGWDDISKNLSTDGKATCLHVLPMSSL-------KVERLDEHLK 393
Query: 133 MTERGYSKVVGFVPTGWTYEVKRSR----FAVKSKDSCQIHLVPYSEHSNYEELREYVKF 188
+ Y V+ F PTGWTY K S+ I+ VPYSEHS++ ELRE+V+F
Sbjct: 394 IYREQYGAVLAFRPTGWTYSEKIGEHLDLIKPTSRGKITIYGVPYSEHSSFTELREFVQF 453
Query: 189 LKPKQVIPTV 198
L+P ++IPTV
Sbjct: 454 LRPDKIIPTV 463
>AT3G26680.2 | Symbols: SNM1 | DNA repair metallo-beta-lactamase
family protein | chr3:9801309-9803517 FORWARD LENGTH=484
Length = 484
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 105/190 (55%), Gaps = 14/190 (7%)
Query: 16 VFLDTTYCHPKFVFPAQEESVDYVVNVVGEC--DGDDVLFLVATYVVGKERILLELARRF 73
++LDTTYC+P++ FP++E+ + YVV + + L +V +Y +GKE + L +A+
Sbjct: 281 LYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIVVGSYSIGKECVYLAIAKAL 340
Query: 74 NKKVLVDARKMEVLRVLGYGE-SSEFTEDGLETNIHVVGWNVLGETWPYFRPDFVKMKDI 132
K+ +A + +L+ G+ + S + DG T +HV+ + L + + +
Sbjct: 341 GVKIFANASRRRILQSFGWDDISKNLSTDGKATCLHVLPMSSL-------KVERLDEHLK 393
Query: 133 MTERGYSKVVGFVPTGWTYEVKRSR----FAVKSKDSCQIHLVPYSEHSNYEELREYVKF 188
+ Y V+ F PTGWTY K S+ I+ VPYSEHS++ ELRE+V+F
Sbjct: 394 IYREQYGAVLAFRPTGWTYSEKIGEHLDLIKPTSRGKITIYGVPYSEHSSFTELREFVQF 453
Query: 189 LKPKQVIPTV 198
L+P ++IPTV
Sbjct: 454 LRPDKIIPTV 463
>AT3G26680.1 | Symbols: SNM1, ATSNM1 | DNA repair
metallo-beta-lactamase family protein |
chr3:9801309-9803517 FORWARD LENGTH=484
Length = 484
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 105/190 (55%), Gaps = 14/190 (7%)
Query: 16 VFLDTTYCHPKFVFPAQEESVDYVVNVVGEC--DGDDVLFLVATYVVGKERILLELARRF 73
++LDTTYC+P++ FP++E+ + YVV + + L +V +Y +GKE + L +A+
Sbjct: 281 LYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIVVGSYSIGKECVYLAIAKAL 340
Query: 74 NKKVLVDARKMEVLRVLGYGE-SSEFTEDGLETNIHVVGWNVLGETWPYFRPDFVKMKDI 132
K+ +A + +L+ G+ + S + DG T +HV+ + L + + +
Sbjct: 341 GVKIFANASRRRILQSFGWDDISKNLSTDGKATCLHVLPMSSL-------KVERLDEHLK 393
Query: 133 MTERGYSKVVGFVPTGWTYEVKRSR----FAVKSKDSCQIHLVPYSEHSNYEELREYVKF 188
+ Y V+ F PTGWTY K S+ I+ VPYSEHS++ ELRE+V+F
Sbjct: 394 IYREQYGAVLAFRPTGWTYSEKIGEHLDLIKPTSRGKITIYGVPYSEHSSFTELREFVQF 453
Query: 189 LKPKQVIPTV 198
L+P ++IPTV
Sbjct: 454 LRPDKIIPTV 463
>AT1G27410.1 | Symbols: | DNA repair metallo-beta-lactamase family
protein | chr1:9517226-9518743 FORWARD LENGTH=422
Length = 422
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 44/208 (21%)
Query: 14 DAVFLDTTYCHPKFVFPAQEESVDYVVNVVGECDGDDVLFLVATYVVGKERILLELARRF 73
D ++LD TYC+P + FP++ +V V +++ D+ ++A +GKE +L+ ++R
Sbjct: 141 DILYLDNTYCNPIYSFPSRLVAVQLVADIIASHPSHDI--IIAVDSLGKEDLLVHVSRIL 198
Query: 74 NKKVLVDARKMEVLRVLGYGESSEFTEDGLETNIHVVGWNVLGETWPYFRPDFVKMKDIM 133
N K+ V ++ + +LG+ + FT D T + V P + ++ +
Sbjct: 199 NIKIWVWPERLRTMHLLGFQDI--FTTDTSLTRVRAV---------PRYSFSIQTLEGLN 247
Query: 134 TERGYSKVVGFVPTGWTYEVKR--------------------SRFAVKSKDSCQIH---- 169
T +G +P+G + VKR + A K ++ +H
Sbjct: 248 T---MCPTIGIMPSGLPW-VKRPFKGDDKLSGSFLTASMKNETVSAKKELEAAAVHKFHD 303
Query: 170 ---LVPYSEHSNYEELREYVKFLKPKQV 194
V YS+HS YEE+ E++K +KPK +
Sbjct: 304 YMYSVHYSDHSCYEEIGEFIKLVKPKSM 331
>AT5G17360.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: DNA LIGASE 6 (TAIR:AT1G66730.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria -
0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses -
0; Other Eukaryotes - 339 (source: NCBI BLink). |
chr5:5720620-5721147 FORWARD LENGTH=175
Length = 175
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 285 KEKIIQELSCCLPSWVTRSQVLDLISISGSNIVEAVSNFYERETEFHDQVN 335
+E I++EL CLP WVT+ QV D+I + NIVE V NFYE ET+F++QV+
Sbjct: 23 QEAILEELRICLPKWVTQEQVTDMIRGTCRNIVEIVDNFYEHETKFYEQVS 73