Miyakogusa Predicted Gene

Lj1g3v3221300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3221300.1 tr|A9T4N0|A9T4N0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_88027
,37.8,2e-19,EF_HAND_2,EF-HAND 2; EF_HAND_1,EF-Hand 1, calcium-binding
site; EF_hand_5,NULL; no description,EF-ha,CUFF.30234.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44310.1 | Symbols:  | Calcium-binding EF-hand family protein...   135   8e-33
AT1G54530.1 | Symbols:  | Calcium-binding EF hand family protein...    60   5e-10
AT4G38810.2 | Symbols:  | Calcium-binding EF-hand family protein...    52   1e-07

>AT2G44310.1 | Symbols:  | Calcium-binding EF-hand family protein |
           chr2:18309285-18309713 FORWARD LENGTH=142
          Length = 142

 Score =  135 bits (340), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 101/137 (73%), Gaps = 2/137 (1%)

Query: 1   MSVEILDGATIVNFLEDEEAFDISICNRFALLDTNKDGRLSYKEMLKELQSLRVLETHFG 60
           M V ++DG+T+ +F++DEE F  S+  RFA LD NKDG LS  E+ K  +S+R+LE+HFG
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  IDVEPNPDELARVYESLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPVQMVL-- 118
           +DV    DEL  +Y+S+F +FD + +GSVDLEEF+ E ++++LA+ADG+G  P+ MVL  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 119 EEDSILKKAVERECNKV 135
           ++D+ LKKA + E +K+
Sbjct: 121 DDDNFLKKAADLEASKL 137


>AT1G54530.1 | Symbols:  | Calcium-binding EF hand family protein |
           chr1:20366505-20366888 FORWARD LENGTH=127
          Length = 127

 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 9/130 (6%)

Query: 5   ILDGATIVNFLEDEEAFDISICNRFALLDTNKDGRLSYKEMLKELQSLRVLETHFGIDVE 64
           ++   T++ FL D ++F+    + F +LD +K+G LS  E+ + L ++  +E+    +V 
Sbjct: 5   VITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVES----EVA 60

Query: 65  PNPDELARVYESLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPVQMVLEEDSIL 124
           P  DE   VY ++F +F  +L      + F+    E++ AMA G+G  PV MV+  D ++
Sbjct: 61  PG-DETDNVYNAIFERFGEDLVP----KNFRDLIAEILTAMARGIGNSPVIMVVHNDGLI 115

Query: 125 KKAVERECNK 134
            KAV  E  +
Sbjct: 116 MKAVLHESKQ 125


>AT4G38810.2 | Symbols:  | Calcium-binding EF-hand family protein |
           chr4:18115607-18118860 REVERSE LENGTH=375
          Length = 375

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 4   EILDGATIVNFLEDEEAFDISICNRFALLDTNKDGRLSYKEMLKELQSLRVLETHFGIDV 63
           ++LDG+ IV  +E+E+ FD  +  +F  LD ++DG+LS  E+   +  +       G+  
Sbjct: 13  QVLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVADIGAA---LGLPA 69

Query: 64  EPNPDELARVYESLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPV 114
           +    +   +Y  +  +F H     V   EFK    +++L MA G+   P+
Sbjct: 70  QGTSPDSDHIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPI 120