Miyakogusa Predicted Gene

Lj1g3v3218090.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3218090.2 Non Chatacterized Hit- tr|E1ZJR8|E1ZJR8_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,43.75,0.000000000000003,seg,NULL,CUFF.30221.2
         (160 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12590.1 | Symbols:  | unknown protein; INVOLVED IN: biologic...   236   3e-63

>AT3G12590.1 | Symbols:  | unknown protein; INVOLVED IN:
            biological_process unknown; LOCATED IN: chloroplast; Has
            50 Blast hits to 41 proteins in 15 species: Archae - 0;
            Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43;
            Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). |
            chr3:3996473-4003657 REVERSE LENGTH=1184
          Length = 1184

 Score =  236 bits (603), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/153 (75%), Positives = 127/153 (83%)

Query: 4    LLQGRAIVPMQLIARVPAALLYWPXXXXXXXXXXXXXXXXXXXSKGRGNLPGATSDIRAV 63
            LL+G+AIVPMQL+ARVPAAL YWP                   SKGRGN+PGATSDIRA 
Sbjct: 1032 LLRGQAIVPMQLVARVPAALFYWPLIQLAGAATDNIALGVAVGSKGRGNIPGATSDIRAT 1091

Query: 64   LLLLLIGKCSADPIAFQEVGQEQFFRELLDDTDSRVAYYSSAFLLKRMMTEKPEKYQHML 123
            LLLLLIGKC+AD +AFQEVG E+FFRELLDDTDSRVAYYSSAFLLKRMMTE+PEKYQ+ML
Sbjct: 1092 LLLLLIGKCTADTVAFQEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEEPEKYQNML 1151

Query: 124  QNLVVKAQQSNNEKLLENPYLQMRGILQLASDL 156
            Q LV KAQQSNNEKLLENPYLQM GILQL+++L
Sbjct: 1152 QKLVFKAQQSNNEKLLENPYLQMCGILQLSNEL 1184