Miyakogusa Predicted Gene

Lj1g3v3218060.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3218060.2 Non Chatacterized Hit- tr|I1JDQ5|I1JDQ5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38119 PE,59.43,0,RNA AND
EXPORT FACTOR BINDING PROTEIN,NULL; no description,Nucleotide-binding,
alpha-beta plait; RNA,CUFF.30217.2
         (183 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02530.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   140   5e-34
AT5G02530.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   140   5e-34
AT5G59950.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   137   5e-33
AT5G59950.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   137   5e-33
AT5G59950.5 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   137   6e-33
AT5G59950.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   136   9e-33
AT5G59950.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   134   4e-32
AT5G37720.1 | Symbols: ALY4 | ALWAYS EARLY 4 | chr5:14981805-149...   117   3e-27
AT1G66260.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   117   4e-27
AT1G66260.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   117   4e-27
AT5G37720.2 | Symbols: ALY4 | ALWAYS EARLY 4 | chr5:14981805-149...   116   8e-27
AT3G08000.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    53   1e-07
AT2G37220.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   2e-07
AT3G10400.1 | Symbols:  | RNA recognition motif and CCHC-type zi...    52   3e-07
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |...    51   4e-07
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29...    49   1e-06
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29...    49   2e-06
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29...    49   2e-06
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29...    49   2e-06
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    49   2e-06
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2...    49   2e-06
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1...    48   4e-06
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8...    47   5e-06
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1...    47   7e-06

>AT5G02530.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:564332-565776 REVERSE LENGTH=292
          Length = 292

 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 81/93 (87%)

Query: 74  GTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIK 133
           GTKLYISNLDYGVSN DIK LFSE G+LKRYGIHYD+SGRSKGTAEVVF R+ DALAA+K
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166

Query: 134 KYNNMRLDGKPLQIELVGSSLVTPAPAVVPLSQ 166
           +YNN++LDGK ++IE+VG++L  PA  ++  +Q
Sbjct: 167 RYNNVQLDGKLMKIEIVGTNLSAPALPILATAQ 199


>AT5G02530.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:564332-565776 REVERSE LENGTH=290
          Length = 290

 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 81/93 (87%)

Query: 74  GTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIK 133
           GTKLYISNLDYGVSN DIK LFSE G+LKRYGIHYD+SGRSKGTAEVVF R+ DALAA+K
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166

Query: 134 KYNNMRLDGKPLQIELVGSSLVTPAPAVVPLSQ 166
           +YNN++LDGK ++IE+VG++L  PA  ++  +Q
Sbjct: 167 RYNNVQLDGKLMKIEIVGTNLSAPALPILATAQ 199


>AT5G59950.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:24140235-24141410 FORWARD LENGTH=211
          Length = 211

 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 73/138 (52%), Positives = 95/138 (68%), Gaps = 6/138 (4%)

Query: 37  RHLTRTTPYSVPPQPQVERRRVVPEMDLEDDKVSENK-----GTKLYISNLDYGVSNADI 91
           R  TR+ PY     P+      +     ED +   +      GTKLYISNLDYGV N DI
Sbjct: 45  RKSTRSAPYQSAKAPESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDI 104

Query: 92  KLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIKKYNNMRLDGKPLQIELVG 151
           K LF+E GELKRY +H+D+SGRSKGTAEVV+ R+ DALAA+KKYN+++LDGKP++IE+VG
Sbjct: 105 KELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVG 164

Query: 152 SSLVT-PAPAVVPLSQNS 168
           ++L T  AP+  P + NS
Sbjct: 165 TNLQTAAAPSGRPANGNS 182


>AT5G59950.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:24140235-24141504 FORWARD LENGTH=244
          Length = 244

 Score =  137 bits (344), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 73/138 (52%), Positives = 95/138 (68%), Gaps = 6/138 (4%)

Query: 37  RHLTRTTPYSVPPQPQVERRRVVPEMDLEDDKVSENK-----GTKLYISNLDYGVSNADI 91
           R  TR+ PY     P+      +     ED +   +      GTKLYISNLDYGV N DI
Sbjct: 45  RKSTRSAPYQSAKAPESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDI 104

Query: 92  KLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIKKYNNMRLDGKPLQIELVG 151
           K LF+E GELKRY +H+D+SGRSKGTAEVV+ R+ DALAA+KKYN+++LDGKP++IE+VG
Sbjct: 105 KELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVG 164

Query: 152 SSLVT-PAPAVVPLSQNS 168
           ++L T  AP+  P + NS
Sbjct: 165 TNLQTAAAPSGRPANGNS 182


>AT5G59950.5 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:24140235-24141504 FORWARD LENGTH=245
          Length = 245

 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/138 (52%), Positives = 95/138 (68%), Gaps = 6/138 (4%)

Query: 37  RHLTRTTPYSVPPQPQVERRRVVPEMDLEDDKVSENK-----GTKLYISNLDYGVSNADI 91
           R  TR+ PY     P+      +     ED +   +      GTKLYISNLDYGV N DI
Sbjct: 45  RKSTRSAPYQSAKAPESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDI 104

Query: 92  KLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIKKYNNMRLDGKPLQIELVG 151
           K LF+E GELKRY +H+D+SGRSKGTAEVV+ R+ DALAA+KKYN+++LDGKP++IE+VG
Sbjct: 105 KELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVG 164

Query: 152 SSLVT-PAPAVVPLSQNS 168
           ++L T  AP+  P + NS
Sbjct: 165 TNLQTAAAPSGRPANGNS 182


>AT5G59950.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:24140235-24141504 FORWARD LENGTH=242
          Length = 242

 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 97/143 (67%), Gaps = 18/143 (12%)

Query: 37  RHLTRTTPYSVPPQPQVERRRVVPEMDLEDDKVSENK----------GTKLYISNLDYGV 86
           R  TR+ PY   P+            D+  D+  +++          GTKLYISNLDYGV
Sbjct: 45  RKSTRSAPYQSAPESTWGH-------DMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGV 97

Query: 87  SNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIKKYNNMRLDGKPLQ 146
            N DIK LF+E GELKRY +H+D+SGRSKGTAEVV+ R+ DALAA+KKYN+++LDGKP++
Sbjct: 98  MNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMK 157

Query: 147 IELVGSSLVT-PAPAVVPLSQNS 168
           IE+VG++L T  AP+  P + NS
Sbjct: 158 IEIVGTNLQTAAAPSGRPANGNS 180


>AT5G59950.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:24140629-24141504 FORWARD LENGTH=178
          Length = 178

 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 82/96 (85%), Gaps = 1/96 (1%)

Query: 74  GTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIK 133
           GTKLYISNLDYGV N DIK LF+E GELKRY +H+D+SGRSKGTAEVV+ R+ DALAA+K
Sbjct: 21  GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 80

Query: 134 KYNNMRLDGKPLQIELVGSSLVT-PAPAVVPLSQNS 168
           KYN+++LDGKP++IE+VG++L T  AP+  P + NS
Sbjct: 81  KYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPANGNS 116


>AT5G37720.1 | Symbols: ALY4 | ALWAYS EARLY 4 |
           chr5:14981805-14983978 REVERSE LENGTH=288
          Length = 288

 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 82/110 (74%), Gaps = 2/110 (1%)

Query: 74  GTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIK 133
           GT+L+++NLD GV+N DI+ LFSE GE++RY IHYDK+GR  GTAEVV+ R+SDA  A+K
Sbjct: 92  GTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALK 151

Query: 134 KYNNMRLDGKPLQIELVGSSLVTPAP--AVVPLSQNSLQGRLNHALVREQ 181
           KYNN+ LDG+P+++E++G +  + AP    V ++   L GRL   +V +Q
Sbjct: 152 KYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVVIQQ 201


>AT1G66260.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:24695895-24697883 REVERSE LENGTH=295
          Length = 295

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 79/104 (75%), Gaps = 1/104 (0%)

Query: 74  GTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIK 133
           GT +YI+NLD GV+N DI+ L++E GELKRY IHYDK+GR  G+AEVV+MR+SDA+ A++
Sbjct: 106 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMR 165

Query: 134 KYNNMRLDGKPLQIELVGSSLVTPAPAVVPLSQNSLQGRLNHAL 177
           KYNN+ LDG+P+++E++G +    AP    ++   L GR+  ++
Sbjct: 166 KYNNVLLDGRPMKLEILGGN-TESAPVAARVNVTGLNGRMKRSV 208


>AT1G66260.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:24695895-24697883 REVERSE LENGTH=295
          Length = 295

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 79/104 (75%), Gaps = 1/104 (0%)

Query: 74  GTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIK 133
           GT +YI+NLD GV+N DI+ L++E GELKRY IHYDK+GR  G+AEVV+MR+SDA+ A++
Sbjct: 106 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMR 165

Query: 134 KYNNMRLDGKPLQIELVGSSLVTPAPAVVPLSQNSLQGRLNHAL 177
           KYNN+ LDG+P+++E++G +    AP    ++   L GR+  ++
Sbjct: 166 KYNNVLLDGRPMKLEILGGN-TESAPVAARVNVTGLNGRMKRSV 208


>AT5G37720.2 | Symbols: ALY4 | ALWAYS EARLY 4 |
           chr5:14981805-14983978 REVERSE LENGTH=280
          Length = 280

 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 80/107 (74%), Gaps = 2/107 (1%)

Query: 74  GTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIK 133
           GT+L+++NLD GV+N DI+ LFSE GE++RY IHYDK+GR  GTAEVV+ R+SDA  A+K
Sbjct: 92  GTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALK 151

Query: 134 KYNNMRLDGKPLQIELVGSSLVTPAP--AVVPLSQNSLQGRLNHALV 178
           KYNN+ LDG+P+++E++G +  + AP    V ++   L GRL   +V
Sbjct: 152 KYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVV 198


>AT3G08000.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:2555034-2555829 REVERSE LENGTH=143
          Length = 143

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 76  KLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDK-SGRSKGTAEVVFMRQSDALAAIKK 134
           KL+I  L + V    +K  FS  GE+    I YDK SGRS+G   V F  + DAL+A   
Sbjct: 42  KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101

Query: 135 YNNMRLDGKPLQIELVGSSLVTPAPAVVP 163
            +   L G+PL+I       V   P VVP
Sbjct: 102 MDGKGLLGRPLRISFA-LERVRGGPVVVP 129


>AT2G37220.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:15634980-15636331 REVERSE LENGTH=289
          Length = 289

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 76  KLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDK-SGRSKGTAEVVFMRQSDALAAIKK 134
           KL++ NL + V +A +  LF   G ++   + YDK +GRS+G   V     S+  AA ++
Sbjct: 92  KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151

Query: 135 YNNMRLDGKPLQI 147
           +N   LDG+PL++
Sbjct: 152 FNGYELDGRPLRV 164



 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 75  TKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDK-SGRSKGTAEVVFMRQSDALAAIK 133
            ++Y+ NL +GV +  ++ LFSE+G++    + YD+ SGRSKG   V +    +   AIK
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263

Query: 134 KYNNMRLDGKPLQI 147
             +   LDG+ +++
Sbjct: 264 SLDGADLDGRQIRV 277


>AT3G10400.1 | Symbols:  | RNA recognition motif and CCHC-type zinc
           finger domains containing protein | chr3:3232636-3233421
           FORWARD LENGTH=261
          Length = 261

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 75  TKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGR-SKGTAEVVFMRQSDALAAIK 133
           + LY+SNLD+ ++N+DI  LFS  G++ R  +  D+  R S+G A V+++ + DA  A +
Sbjct: 57  STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116

Query: 134 KYNNMRLDGKPLQIELVG 151
             +   L+G+ L + +  
Sbjct: 117 SMDAKILNGRKLTVSIAA 134


>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
           chr2:9943209-9946041 FORWARD LENGTH=662
          Length = 662

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%)

Query: 74  GTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIK 133
           G  LY+ NLD  V++  ++ LF+E G +    +  D SG SKG+  V F   S+A   + 
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386

Query: 134 KYNNMRLDGKPLQIELV 150
           + N   + GKPL + L 
Sbjct: 387 EMNGKMVGGKPLYVALA 403


>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
           chr3:19819738-19821423 REVERSE LENGTH=363
          Length = 363

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 75  TKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDK-SGRSKGTAEVVFMRQSDALAAIK 133
            +LY+ NL +GV +  ++ LF+E+G++    + YD+ SGRSKG   V      +   AI 
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337

Query: 134 KYNNMRLDGKPLQI 147
             N   LDG+ +++
Sbjct: 338 SLNGADLDGRQIRV 351


>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
           chr3:19819738-19821423 REVERSE LENGTH=342
          Length = 342

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 75  TKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDK-SGRSKGTAEVVFMRQSDALAAIK 133
            +LY+ NL +GV +  ++ LF+E+G++    + YD+ SGRSKG   V      +   AI 
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316

Query: 134 KYNNMRLDGKPLQI 147
             N   LDG+ +++
Sbjct: 317 SLNGADLDGRQIRV 330


>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
           chr3:19819738-19821423 REVERSE LENGTH=342
          Length = 342

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 75  TKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDK-SGRSKGTAEVVFMRQSDALAAIK 133
            +LY+ NL +GV +  ++ LF+E+G++    + YD+ SGRSKG   V      +   AI 
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316

Query: 134 KYNNMRLDGKPLQI 147
             N   LDG+ +++
Sbjct: 317 SLNGADLDGRQIRV 330


>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
           chr3:19819738-19821423 REVERSE LENGTH=342
          Length = 342

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 75  TKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDK-SGRSKGTAEVVFMRQSDALAAIK 133
            +LY+ NL +GV +  ++ LF+E+G++    + YD+ SGRSKG   V      +   AI 
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316

Query: 134 KYNNMRLDGKPLQI 147
             N   LDG+ +++
Sbjct: 317 SLNGADLDGRQIRV 330


>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 73  KGTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAI 132
           +G+ LY+ NLD  V++  +K +FSE G +    +  +  G S+G   V +    +AL A+
Sbjct: 340 QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAM 399

Query: 133 KKYNNMRLDGKPLQIELV 150
           K+ N   +  KPL + L 
Sbjct: 400 KEMNGKMIGRKPLYVALA 417


>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
           chr1:26990777-26993489 REVERSE LENGTH=682
          Length = 682

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 73  KGTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAI 132
           +G+ LY+ NLD  V++  +K +FSE G +    +  +  G S+G   V +    +AL A+
Sbjct: 340 QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAM 399

Query: 133 KKYNNMRLDGKPLQIELV 150
           K+ N   +  KPL + L 
Sbjct: 400 KEMNGKMIGRKPLYVALA 417


>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
           chr1:12433356-12434735 REVERSE LENGTH=407
          Length = 407

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 38/77 (49%)

Query: 73  KGTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAI 132
           KG  LY+ NLD  V N  ++ LFSE G +    +    +G SKG   V F    +A  A+
Sbjct: 221 KGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAM 280

Query: 133 KKYNNMRLDGKPLQIEL 149
            K N   +  KP+ + L
Sbjct: 281 LKMNGKMVGNKPIYVSL 297


>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
           chr1:8055599-8058799 FORWARD LENGTH=660
          Length = 660

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query: 67  DKVSENKGTKLYISNLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQS 126
           ++  +++G  LY+ NLD  V +  +K +FSE G +    +  +  G S+G   V +    
Sbjct: 324 NRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPE 383

Query: 127 DALAAIKKYNNMRLDGKPLQIELV 150
           +AL A+ + N   +  KPL I L 
Sbjct: 384 EALRALSEMNGKMIGRKPLYIALA 407


>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
           chr2:15361476-15364398 REVERSE LENGTH=609
          Length = 609

 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 2/103 (1%)

Query: 50  QPQVERRRVVPEMDLE--DDKVSENKGTKLYISNLDYGVSNADIKLLFSEEGELKRYGIH 107
           Q + ER +++ E   E  +++    K + +Y+ N++  V+  +++  FS+ G +    + 
Sbjct: 277 QKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLM 336

Query: 108 YDKSGRSKGTAEVVFMRQSDALAAIKKYNNMRLDGKPLQIELV 150
            D+ G+SKG   V F    +A+ A+K ++     GKPL + + 
Sbjct: 337 CDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379