Miyakogusa Predicted Gene
- Lj1g3v3218010.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3218010.2 tr|C1E8G9|C1E8G9_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_59370
,37.24,3e-17,HOMEOBOX_2,Homeodomain; Homeodomain,Homeodomain;
Homeobox,Homeodomain; no description,Homeodomain-li,CUFF.30213.2
(256 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related ho... 238 3e-63
AT1G20700.1 | Symbols: WOX14, ATWOX14 | WUSCHEL related homeobox... 171 5e-43
AT1G20710.1 | Symbols: WOX10 | WUSCHEL related homeobox 10 | chr... 132 2e-31
AT2G33880.1 | Symbols: WOX9, HB-3, STIP | homeobox-3 | chr2:1434... 73 2e-13
AT5G45980.1 | Symbols: WOX8, STPL | WUSCHEL related homeobox 8 |... 71 6e-13
AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3:... 70 1e-12
AT3G18010.1 | Symbols: WOX1 | WUSCHEL related homeobox 1 | chr3:... 70 2e-12
AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5:... 67 1e-11
AT5G05770.1 | Symbols: WOX7 | WUSCHEL related homeobox 7 | chr5:... 67 1e-11
AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superf... 67 2e-11
AT1G46480.1 | Symbols: WOX4 | WUSCHEL related homeobox 4 | chr1:... 65 3e-11
AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like super... 63 2e-10
AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superf... 60 1e-09
AT5G46010.1 | Symbols: | Homeodomain-like superfamily protein |... 54 9e-08
AT5G17810.2 | Symbols: WOX12 | WUSCHEL related homeobox 12 | chr... 54 1e-07
AT5G17810.1 | Symbols: WOX12 | WUSCHEL related homeobox 12 | chr... 54 1e-07
AT3G03660.2 | Symbols: WOX11 | WUSCHEL related homeobox 11 | chr... 53 2e-07
AT3G03660.1 | Symbols: WOX11 | WUSCHEL related homeobox 11 | chr... 53 2e-07
>AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related
homeobox 13 | chr4:16875814-16877167 REVERSE LENGTH=268
Length = 268
Score = 238 bits (608), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/254 (51%), Positives = 163/254 (64%), Gaps = 43/254 (16%)
Query: 24 LMTDEQVETLRKQIAVYSTICEQLIDMHKTLSTHQDLAGVRLGGMYCDPLMASGGHKISS 83
+MTDEQ ETLRKQIA+Y TICE+L++MHKTL+ QDLAG R+GG+Y DP+M+S GHK+++
Sbjct: 37 VMTDEQYETLRKQIAIYGTICERLVEMHKTLTAQQDLAGGRMGGLYADPMMSSLGHKMTA 96
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSK 143
RQRWTPT VQLQILERIF+ GTGTPSK+KIK+IT +LSQHGQI+E NVYNWFQNRRARSK
Sbjct: 97 RQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSK 156
Query: 144 RKQQSVSQPSGANAESEVETEVDS-KDKKTKSGEVVV--------------------QPT 182
RKQ N ESEVETEV++ +K+ E ++ P
Sbjct: 157 RKQHGGGSSGNNNGESEVETEVEALNEKRVVRPESLLGLPDGNSNNNGLGTTTATTTAPR 216
Query: 183 AENMCFQNPDVCPDLQYLSPESDGGLRSTRGFDHVPSFDGMLSSSRSGYLTEKMEAPESY 242
E++CFQ+P++ DL L +LS+ R +L KM ESY
Sbjct: 217 PEDLCFQSPEISSDLHLLD---------------------VLSNPRDEHLVGKMGLAESY 255
Query: 243 NLYQPAGGDYDMSG 256
NLY DY MSG
Sbjct: 256 NLYDHV-EDYGMSG 268
>AT1G20700.1 | Symbols: WOX14, ATWOX14 | WUSCHEL related homeobox 14
| chr1:7182558-7183866 FORWARD LENGTH=211
Length = 211
Score = 171 bits (433), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 125/176 (71%), Gaps = 8/176 (4%)
Query: 21 NANLMTDEQVETLRKQIAVYSTICEQLIDMHKTLSTHQDLA-GVR-LGGMYCDPLMASGG 78
+ +MT+EQ+E LRKQIAVY+ IC+QL+ +H +LS++ L+ GVR + G Y DP+ AS
Sbjct: 27 SGRVMTEEQMEILRKQIAVYAVICDQLVLLHNSLSSYHPLSSGVRPMVGGYFDPMGASSS 86
Query: 79 -HKISSRQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQN 137
H+IS+R RWTPT+ QLQILE I++ G+GTP++ +I+EI +LS+HGQI+ETNVYNWFQN
Sbjct: 87 SHRISTRHRWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQN 146
Query: 138 RRARSKRKQQSVSQPSGANAESEVETEVDSKDKKTKSGEVVVQPTAENMCFQNPDV 193
RRARSKRKQ + +G + V TE ++ G+ + E++ F +PD+
Sbjct: 147 RRARSKRKQPQTTTANGQADDVAVTTE-----ERRSCGDSGGLESYEHILFPSPDL 197
>AT1G20710.1 | Symbols: WOX10 | WUSCHEL related homeobox 10 |
chr1:7184485-7185267 FORWARD LENGTH=197
Length = 197
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 121/176 (68%), Gaps = 7/176 (3%)
Query: 22 ANLMTDEQVETLRKQIAVYSTICEQLIDMHKTLSTHQDLA-GVR-LGGMYCDPLMASG-G 78
+ +MTDEQ+ETLRKQIA+Y+ +C+QL+ +H +LS+ L+ G+ + G Y DP++AS
Sbjct: 12 SRVMTDEQMETLRKQIAIYAVLCDQLVFLHNSLSSVPLLSSGMNPMRGEYFDPMVASSSA 71
Query: 79 HKISSRQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNR 138
H +S+R RWTPT QLQILE I++ G+GTP+ +IKEIT +LS+HGQI E NVY+WFQNR
Sbjct: 72 HGMSTRPRWTPTTTQLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNR 131
Query: 139 RARSKRKQQSVSQPSGANAESEVETEVDSKDK-KTKSGEVVVQPTAENMCFQNPDV 193
RARSKRKQ + + + A+ T + + + SG + E++ F +PD+
Sbjct: 132 RARSKRKQPPTTTITSSQADDAAVTTTEERGRCGDDSGGF---ESYEHILFPSPDL 184
>AT2G33880.1 | Symbols: WOX9, HB-3, STIP | homeobox-3 |
chr2:14341639-14343597 REVERSE LENGTH=378
Length = 378
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 13/87 (14%)
Query: 72 PLMASGGHKISS-------------RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITA 118
PL+ S H+ S + RW P Q++ILE IF +G P +E+I+ I A
Sbjct: 28 PLLPSASHRSSPFSSGCEVERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRA 87
Query: 119 DLSQHGQISETNVYNWFQNRRARSKRK 145
L ++GQ+ + NV+ WFQNR++RSK K
Sbjct: 88 QLQEYGQVGDANVFYWFQNRKSRSKHK 114
>AT5G45980.1 | Symbols: WOX8, STPL | WUSCHEL related homeobox 8 |
chr5:18648921-18650698 FORWARD LENGTH=325
Length = 325
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSK 143
+ RW P Q++ILE IF +GT P +E+I+ I L ++GQI + NV+ WFQNR++R+K
Sbjct: 53 KPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAK 112
Query: 144 RK 145
K
Sbjct: 113 HK 114
>AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 |
chr3:3527606-3528263 FORWARD LENGTH=182
Length = 182
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 47/65 (72%)
Query: 86 RWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRK 145
RW PT QL+IL +F AG TP+ ++I++I+ +LS +G+I NV+ WFQN +AR ++K
Sbjct: 24 RWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQNHKARERQK 83
Query: 146 QQSVS 150
++ +S
Sbjct: 84 RRKIS 88
>AT3G18010.1 | Symbols: WOX1 | WUSCHEL related homeobox 1 |
chr3:6161155-6163183 REVERSE LENGTH=350
Length = 350
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%)
Query: 86 RWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRK 145
RW PT QL++LE ++ GT TPS + I++ITA L ++G+I NV+ WFQN +AR ++K
Sbjct: 76 RWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQK 135
Query: 146 QQ 147
++
Sbjct: 136 RR 137
>AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 |
chr5:23933408-23934627 REVERSE LENGTH=260
Length = 260
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 82 SSRQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRAR 141
+S RW PT Q+ +LE +++ G TPS ++I++IT L +G I NV+ WFQN +AR
Sbjct: 10 ASSSRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKAR 69
Query: 142 SKRKQQ 147
++KQ+
Sbjct: 70 QRQKQK 75
>AT5G05770.1 | Symbols: WOX7 | WUSCHEL related homeobox 7 |
chr5:1734487-1734855 FORWARD LENGTH=122
Length = 122
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 47/65 (72%)
Query: 86 RWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRK 145
RW PT Q+++L +F+AG TPS ++I++I+ +LS +G+I NV+ WFQN +AR ++K
Sbjct: 29 RWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQNHKARERQK 88
Query: 146 QQSVS 150
+ +S
Sbjct: 89 CRKIS 93
>AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like
superfamily protein | chr2:12262115-12263286 FORWARD
LENGTH=244
Length = 244
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 86 RWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRK 145
RW PT QL ILE ++ +G TP+ +I++ITA L+ +G+I NV+ WFQN +AR ++K
Sbjct: 8 RWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQK 67
>AT1G46480.1 | Symbols: WOX4 | WUSCHEL related homeobox 4 |
chr1:17236903-17237953 REVERSE LENGTH=251
Length = 251
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 86 RWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKRK 145
RW PT Q+ ILE +++ G TP+ ++I+ IT L ++G+I NV+ WFQN +AR ++K
Sbjct: 90 RWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKARERQK 149
Query: 146 QQ-----SVSQPSGANAESEVETEVDSKDKKTKSGEVVVQP 181
Q+ S+S S V K + + S +++ +P
Sbjct: 150 QKRNNLISLSCQSSFTTTGVFNPSVTMKTRTSSSLDIMREP 190
>AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like
superfamily protein | chr2:224470-225997 REVERSE
LENGTH=271
Length = 271
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 12/96 (12%)
Query: 54 LSTHQDLAGVRLGGMYCDPLMASGGHKISSRQ---------RWTPTAVQLQILERIFEAG 104
L TH D+ G + +SG H I R+ RW PT Q+ LE ++ +G
Sbjct: 23 LLTHCDINGNDHHQLIT---ASSGEHDIDERKNNIPAAATLRWNPTPEQITTLEELYRSG 79
Query: 105 TGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRA 140
T TP+ E+I++I + L ++G+I NV+ WFQN +A
Sbjct: 80 TRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKA 115
>AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like
superfamily protein | chr2:7809100-7810671 REVERSE
LENGTH=292
Length = 292
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 86 RWTPTAVQLQILERIF-EAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRRARSKR 144
RWTPT Q++IL+ ++ +P+ ++I++ITA L Q G+I NV+ WFQN +AR ++
Sbjct: 38 RWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQNHKARERQ 97
Query: 145 KQQ 147
K++
Sbjct: 98 KKR 100
>AT5G46010.1 | Symbols: | Homeodomain-like superfamily protein |
chr5:18660584-18661183 FORWARD LENGTH=122
Length = 122
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHG-QISETNVYNWFQNRRARS 142
+ W P Q QILE +F GT PS IK+IT L +G ++ + +VY WF NR+
Sbjct: 52 KPEWKPNQHQAQILEELFIGGTVNPSLTSIKQITIKLQSYGEEVDDADVYKWFHNRKYSR 111
Query: 143 KRK 145
K K
Sbjct: 112 KPK 114
>AT5G17810.2 | Symbols: WOX12 | WUSCHEL related homeobox 12 |
chr5:5880576-5882602 REVERSE LENGTH=268
Length = 268
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRR 139
R RW+P Q+ ILE IF +GT P K++ I L + G + + NV+ WFQNRR
Sbjct: 19 RARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRR 74
>AT5G17810.1 | Symbols: WOX12 | WUSCHEL related homeobox 12 |
chr5:5880576-5882602 REVERSE LENGTH=268
Length = 268
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRR 139
R RW+P Q+ ILE IF +GT P K++ I L + G + + NV+ WFQNRR
Sbjct: 19 RARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRR 74
>AT3G03660.2 | Symbols: WOX11 | WUSCHEL related homeobox 11 |
chr3:889515-892162 REVERSE LENGTH=297
Length = 297
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%)
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRR 139
R RW+P Q+ ILE IF +G P KE+ I L + G + + NV+ WFQNRR
Sbjct: 31 RSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQNRR 86
>AT3G03660.1 | Symbols: WOX11 | WUSCHEL related homeobox 11 |
chr3:889515-892162 REVERSE LENGTH=268
Length = 268
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%)
Query: 84 RQRWTPTAVQLQILERIFEAGTGTPSKEKIKEITADLSQHGQISETNVYNWFQNRR 139
R RW+P Q+ ILE IF +G P KE+ I L + G + + NV+ WFQNRR
Sbjct: 31 RSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQNRR 86