Miyakogusa Predicted Gene
- Lj1g3v3207810.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3207810.1 Non Chatacterized Hit- tr|D7TLY6|D7TLY6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,39.13,0.00000000000003,F-box,F-box domain, cyclin-like; no
description,NULL; FBOX,F-box domain, cyclin-like; F-box
domain,F,CUFF.30187.1
(391 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G39490.1 | Symbols: | F-box family protein | chr2:16487151-1... 230 1e-60
AT3G28410.1 | Symbols: | F-box/RNI-like superfamily protein | c... 55 1e-07
AT5G02700.1 | Symbols: | F-box/RNI-like superfamily protein | c... 54 2e-07
AT3G18150.1 | Symbols: | RNI-like superfamily protein | chr3:62... 53 3e-07
AT1G61330.1 | Symbols: | FBD, F-box and Leucine Rich Repeat dom... 52 5e-07
AT5G02910.2 | Symbols: | F-box/RNI-like superfamily protein | c... 51 2e-06
AT5G02910.1 | Symbols: | F-box/RNI-like superfamily protein | c... 51 2e-06
AT3G58900.4 | Symbols: | F-box/RNI-like superfamily protein | c... 50 3e-06
AT3G58900.3 | Symbols: | F-box/RNI-like superfamily protein | c... 50 3e-06
AT5G02930.1 | Symbols: | F-box/RNI-like superfamily protein | c... 49 4e-06
AT3G58900.2 | Symbols: | F-box/RNI-like superfamily protein | c... 49 4e-06
AT3G58900.1 | Symbols: | F-box/RNI-like superfamily protein | c... 49 4e-06
>AT2G39490.1 | Symbols: | F-box family protein |
chr2:16487151-16488464 REVERSE LENGTH=387
Length = 387
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 216/364 (59%), Gaps = 11/364 (3%)
Query: 20 HIVSFLPNESAIETIFLSTRWRNLWNEA-LVRH---GTKENITQVVAGFLQRFEELDPLK 75
+I+SFLP ESA T +STR+R++WN+A LV H G+ E+I+ V+ F+ F+E DP K
Sbjct: 19 YIISFLPFESARLTPLVSTRFRSVWNQAILVAHSHNGSIEDISHAVSRFINNFDEHDPSK 78
Query: 76 HPRKLQFHFGEGRIVMATIANNSKLFLDF----STWKKELIEIQYELQFKLSKMQSFTSN 131
+ RKL+ H + V +A ++ + + F + K+E + E+ ++ + +S
Sbjct: 79 NTRKLELHVDKSTFVSTILAPHNVMHMSFFFSGGSKKEESFCWRLEIDDQIPRRVD-SSG 137
Query: 132 ISVKTLYLKSISYLTSGVASTIISNLEHLENLVIIECSGLQSLSIDSASELQKLTIWDCL 191
VKTL L S++ LT V S+++ L++L I C L SL+IDS ++L L+I C
Sbjct: 138 FLVKTLCLDSVNSLTHEVVSSMVLEFSLLDSLKICRCKRLTSLTIDSPTKLLHLSISGCP 197
Query: 192 QLKSLHLRTSKLKSFQISGPLPLIRPEYHFNLSDAMLDFRLGPSCRNFKTRDFDATLLTI 251
+L+ L + + KLK+F G LPLI+ HFNL+ A+ D GPS N D LTI
Sbjct: 198 KLRYLEIISFKLKTFHYQGSLPLIKIHEHFNLTKAVFDVTQGPSYYN-NALDIGPLSLTI 256
Query: 252 KNSQVLTLCKWTFEELIWPSVSPIAGSFKFYKLRELWWIDSYKDEYNMDALFCFLKLCPA 311
KNSQ LTLC+W FEE+I PS+S SF+FYKL+EL WID+ ++ +++L FLKLCP+
Sbjct: 257 KNSQSLTLCRWMFEEVIKPSISSSWRSFQFYKLQELRWIDNSMNQEQINSLISFLKLCPS 316
Query: 312 LEQLFVTIDPESYWTESTNSCLMQTTKCVELKHLKLVKLMGFTCRKDEISLAKCLSHLIK 371
+E+LF+TID +Y + S + V L+ L++VKL GF +D+ L L ++
Sbjct: 317 IERLFITIDSNTYSSNEEVSVNADHARVV-LRDLEVVKLEGFKSEEDKNQLIFALQEIVS 375
Query: 372 GKPP 375
P
Sbjct: 376 IDQP 379
>AT3G28410.1 | Symbols: | F-box/RNI-like superfamily protein |
chr3:10640152-10642071 REVERSE LENGTH=465
Length = 465
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 19/226 (8%)
Query: 6 AKDLFSNLPNEILRHIVSFLPNESAIETIFLSTRWRNLWNEAL-----VRHG-TKENITQ 59
D + +P++IL HI+SF+P + A+ T LS RWR++W E ++HG T + +T
Sbjct: 26 GADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIKLKHGETNQTLTS 85
Query: 60 VVAGFLQRFEELDPLKHPRKLQFHFGEGRIVMATIANNSKLFLDFSTWK----KELIEIQ 115
A + F+ + L Q + + N S DF+ K ++ I
Sbjct: 86 YTAPIITSFKLVMDLNDNTVPQVDSWIEFALSRNVQNLSVFVRDFTYTKTYRFPDIFYIS 145
Query: 116 YELQFKLSKMQSFTSNISVKTLYLKSISYLTSGVASTIISNLEHLENLVIIECSGLQSLS 175
L+ +L F I + KS+ LT ++ + ++ C L+SL+
Sbjct: 146 SSLK-QLDVTLDFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHN----ILSGCPILESLT 200
Query: 176 IDSASELQKLTIWDCLQLKSLHLRTSKLKSFQISGPLPLIRPEYHF 221
+D+ L++L + L+ L + + ++ +GP+ ++ P ++
Sbjct: 201 LDTCRLLERLDLSKSPNLRRLDIN----RQYRRTGPIAIVAPHIYY 242
>AT5G02700.1 | Symbols: | F-box/RNI-like superfamily protein |
chr5:609381-611679 REVERSE LENGTH=456
Length = 456
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 17/225 (7%)
Query: 6 AKDLFSNLPNEILRHIVSFLPNESAIETIFLSTRWRNLWNEA-----LVRHGT-KENITQ 59
D + +P++IL HI+SF+P + A+ T LS RWR++W E ++HG + +T
Sbjct: 25 GADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDITLKHGAMNQTLTS 84
Query: 60 VVAGFLQRFEELDPLKHPRKLQFHFGEGRIVMATIANNSKLFLDFSTWKKELIEIQYELQ 119
A + F+ + L Q + + N S DF+ K + L
Sbjct: 85 YTAPIITSFKLVMDLNSNTVPQVDSWIEFALSRNVQNLSVFVRDFTYSKTYRFPDIFYLS 144
Query: 120 FKLSKMQ---SFTSNISVKTLYLKSISYLTSGVASTIISNLEHLENLVIIECSGLQSLSI 176
L + F I T+ KS+ LT ++ + ++ C L+SL++
Sbjct: 145 SSLKLLDVTLDFFDMIPTCTVSWKSLRNLTLRFCQIPDESIHN----ILSGCPILESLTL 200
Query: 177 DSASELQKLTIWDCLQLKSLHLRTSKLKSFQISGPLPLIRPEYHF 221
D+ L++L + L+ L + + ++ +GP+ ++ P ++
Sbjct: 201 DTCRLLERLDLSKSPNLRRLDIN----QQYRRTGPVAIVAPHIYY 241
>AT3G18150.1 | Symbols: | RNI-like superfamily protein |
chr3:6217929-6219500 FORWARD LENGTH=456
Length = 456
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 98/225 (43%), Gaps = 33/225 (14%)
Query: 6 AKDLFSNLPNEILRHIVSFLPNESAIETIFLSTRWRNLWNEA---------LVRHGTKEN 56
A D S+LP+ IL+HI+SF+P + AI T LS RWR++W + L E
Sbjct: 29 AVDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYRLEAPFIDET 88
Query: 57 ITQVVAGFLQRFE-ELDPLKHPRKLQ--FHFGEGRIV-------MATIANNSKLFLDFST 106
+T+ A + RF + + L+ F R V +AN K F DF
Sbjct: 89 LTRYTASKMMRFHLHTSLINNVPHLESWIKFAMSRNVDHLSLDLWNQVANKFK-FPDFFH 147
Query: 107 WKKELIEIQYELQFKLSKMQSFTSNISVKTLYLKSISYLTSGVASTIISNLEHLENLVII 166
L ++ L F + + I +K LYL S L+ + I+ LE+L +
Sbjct: 148 INSSLKQLTVVLDFSDTMIA-----ICLKKLYL-STCLLSDESMANILFGCPILESLTLD 201
Query: 167 ECSGLQSLSIDSASELQKLTIWDCLQLKSLHLRTSKLKSFQISGP 211
C GL+ L + + L+ L I +C ++ +L + QI P
Sbjct: 202 HCGGLRVLDLSKSLRLRTLEI-NC------NIWVPELTAMQIVAP 239
>AT1G61330.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr1:22622975-22624527
FORWARD LENGTH=447
Length = 447
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 90/398 (22%), Positives = 158/398 (39%), Gaps = 62/398 (15%)
Query: 4 NTAKDLFSNLPNEILRHIVSFLPNESAIETIFLSTRWRNLWNEAL---------VRHGTK 54
N L L +E++ I+SFLP +S ++ LS R+R+ W + VR
Sbjct: 6 NKQMKLIKRLSDELVECILSFLPVQSTLQHRVLSKRYRDTWKLSRDLDFSGIFSVRRSQS 65
Query: 55 ENITQVVAGFLQRFEELDPLKHPRKLQF-----HFGEGRIVMATI-----ANNSKLFLDF 104
E + + F+Q + P +F H G +++ + N +L LDF
Sbjct: 66 EAVRIIEDVFIQH-------QGPEIDRFVLSLDHTGVEDKILSWVDTCLRKNIKELVLDF 118
Query: 105 STWKKELIEIQYELQFKLSKMQSFT------------SNISVKTLYLKSISYLTSGVAS- 151
S+ KK + E+ S ++ T +N+ LK++S + + V +
Sbjct: 119 SSSKKVM-----EIPLNFSSSETLTVLKLQWCRFEIPNNLPKGLRLLKTLSLMRTEVTNE 173
Query: 152 ---TIISNLEHLENLVIIEC----SGLQSLSIDSASELQKLTIWDCLQLKSLHLRTSKLK 204
+I +N HLE+L +++C +G+ ++ + + L + L S+ L L+
Sbjct: 174 MIDSIFNNCIHLESLELVKCQMSGNGILTIYAHDHKKFKSLVVSCMPNLLSIFLDAPTLE 233
Query: 205 SFQISGPLPLIRPEYHFNLSDAMLDFRLGPSCRNFKTRDFDATLLTIKNSQVLTLCKWTF 264
++ G I L +A +F S R + ++L LT
Sbjct: 234 CYKYDGYAKTINVLKVNALEEA--EFHYSRSKRRHSSDTVVDSMLACSAVHALTTTNILL 291
Query: 265 EELIWPSVSPIAGS--FKFYKLRELWWIDSYKDEYNMDALFCFLKLCPALEQLFV----- 317
E + + + FKF LRE + + FLK CP LEQ +
Sbjct: 292 EAITYRYLKGKLEKPLFKFENLREFKIFFKAPTFCTLFDIAEFLKECPKLEQFIIDIQNF 351
Query: 318 TIDPESYWTESTNSCLMQTTKCVE--LKHLKLVKLMGF 353
T +P+ Y+ E + +Q T LK L VK++G+
Sbjct: 352 TFEPQMYFWEIHHKAQIQNTSNNNYLLKCLTDVKIIGY 389
>AT5G02910.2 | Symbols: | F-box/RNI-like superfamily protein |
chr5:677120-678588 FORWARD LENGTH=353
Length = 353
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 8 DLFSNLPNEILRHIVSFLPNESAIETIFLSTRWRNLWNEA 47
D S+LP+EIL HI+S +P +SAI T LS RWR +W+E
Sbjct: 11 DFISSLPDEILHHILSSVPTKSAIRTSLLSKRWRYVWSET 50
>AT5G02910.1 | Symbols: | F-box/RNI-like superfamily protein |
chr5:677120-678907 FORWARD LENGTH=458
Length = 458
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 8 DLFSNLPNEILRHIVSFLPNESAIETIFLSTRWRNLWNEA 47
D S+LP+EIL HI+S +P +SAI T LS RWR +W+E
Sbjct: 11 DFISSLPDEILHHILSSVPTKSAIRTSLLSKRWRYVWSET 50
>AT3G58900.4 | Symbols: | F-box/RNI-like superfamily protein |
chr3:21773030-21774620 FORWARD LENGTH=465
Length = 465
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 109/263 (41%), Gaps = 39/263 (14%)
Query: 8 DLFSNLPNEILRHIVSFLPNESAIETIFLSTRWRNL--------WNEALVRHG-----TK 54
DLFS+LPNE+L HI+SFL + A T LS RWRNL +++++ H K
Sbjct: 2 DLFSSLPNELLYHILSFLSTKEAALTSVLSKRWRNLFAFVPYLEFDDSVFLHPEERKREK 61
Query: 55 ENITQVVAGFLQRFEEL--DPLKHPRKLQFHFGEGRI--------VMATIANNSKLFLDF 104
E I Q F+ R +L D L L+ G V+A ++ LF+DF
Sbjct: 62 EGILQSFMDFVDRVLDLHGDSLIKTFSLKCKTGVDSDHVDRWICNVLARGVSDLDLFIDF 121
Query: 105 STW---------KKELIEIQYELQFKLSKMQSFTSNISVKTLYLKSISYLTSGVASTIIS 155
+ L+ ++ + L Q F +KTL L S +L G ++
Sbjct: 122 RDLYSLPHEVGVSRTLVVLRVGSESDLYWWQKFLCLPMLKTLVLDS-CWLCIGQFQILLL 180
Query: 156 NLEHLENLVIIECSGLQSLSIDSASELQKLTI-----WDCLQLKSLHLRTSKLKSFQISG 210
LE L + S S+S L++LTI + LKSL L F
Sbjct: 181 ACPALEELDMTNTRWKDSNVTVSSSILKELTIDLHGCCSVVNLKSLSFDAPSLVYFYYCD 240
Query: 211 PLPLIRPEYHF-NLSDAMLDFRL 232
L P+ + NL +A ++ L
Sbjct: 241 SLAEDYPQVNLKNLVEAQINLLL 263
>AT3G58900.3 | Symbols: | F-box/RNI-like superfamily protein |
chr3:21773030-21774074 FORWARD LENGTH=314
Length = 314
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 109/263 (41%), Gaps = 39/263 (14%)
Query: 8 DLFSNLPNEILRHIVSFLPNESAIETIFLSTRWRNL--------WNEALVRHG-----TK 54
DLFS+LPNE+L HI+SFL + A T LS RWRNL +++++ H K
Sbjct: 2 DLFSSLPNELLYHILSFLSTKEAALTSVLSKRWRNLFAFVPYLEFDDSVFLHPEERKREK 61
Query: 55 ENITQVVAGFLQRFEEL--DPLKHPRKLQFHFGEGRI--------VMATIANNSKLFLDF 104
E I Q F+ R +L D L L+ G V+A ++ LF+DF
Sbjct: 62 EGILQSFMDFVDRVLDLHGDSLIKTFSLKCKTGVDSDHVDRWICNVLARGVSDLDLFIDF 121
Query: 105 STW---------KKELIEIQYELQFKLSKMQSFTSNISVKTLYLKSISYLTSGVASTIIS 155
+ L+ ++ + L Q F +KTL L S +L G ++
Sbjct: 122 RDLYSLPHEVGVSRTLVVLRVGSESDLYWWQKFLCLPMLKTLVLDS-CWLCIGQFQILLL 180
Query: 156 NLEHLENLVIIECSGLQSLSIDSASELQKLTI-----WDCLQLKSLHLRTSKLKSFQISG 210
LE L + S S+S L++LTI + LKSL L F
Sbjct: 181 ACPALEELDMTNTRWKDSNVTVSSSILKELTIDLHGCCSVVNLKSLSFDAPSLVYFYYCD 240
Query: 211 PLPLIRPEYHF-NLSDAMLDFRL 232
L P+ + NL +A ++ L
Sbjct: 241 SLAEDYPQVNLKNLVEAQINLLL 263
>AT5G02930.1 | Symbols: | F-box/RNI-like superfamily protein |
chr5:682577-684480 FORWARD LENGTH=469
Length = 469
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 4 NTAKDLFSNLPNEILRHIVSFLPNESAIETIFLSTRWRNLWNEA 47
+ D S+LP+ +L+HI S++P E AI T LS RWR++W+E
Sbjct: 24 DVGVDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSET 67
>AT3G58900.2 | Symbols: | F-box/RNI-like superfamily protein |
chr3:21773030-21774013 FORWARD LENGTH=327
Length = 327
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 109/263 (41%), Gaps = 39/263 (14%)
Query: 8 DLFSNLPNEILRHIVSFLPNESAIETIFLSTRWRNL--------WNEALVRHG-----TK 54
DLFS+LPNE+L HI+SFL + A T LS RWRNL +++++ H K
Sbjct: 2 DLFSSLPNELLYHILSFLSTKEAALTSVLSKRWRNLFAFVPYLEFDDSVFLHPEERKREK 61
Query: 55 ENITQVVAGFLQRFEEL--DPLKHPRKLQFHFGEGRI--------VMATIANNSKLFLDF 104
E I Q F+ R +L D L L+ G V+A ++ LF+DF
Sbjct: 62 EGILQSFMDFVDRVLDLHGDSLIKTFSLKCKTGVDSDHVDRWICNVLARGVSDLDLFIDF 121
Query: 105 STW---------KKELIEIQYELQFKLSKMQSFTSNISVKTLYLKSISYLTSGVASTIIS 155
+ L+ ++ + L Q F +KTL L S +L G ++
Sbjct: 122 RDLYSLPHEVGVSRTLVVLRVGSESDLYWWQKFLCLPMLKTLVLDS-CWLCIGQFQILLL 180
Query: 156 NLEHLENLVIIECSGLQSLSIDSASELQKLTI-----WDCLQLKSLHLRTSKLKSFQISG 210
LE L + S S+S L++LTI + LKSL L F
Sbjct: 181 ACPALEELDMTNTRWKDSNVTVSSSILKELTIDLHGCCSVVNLKSLSFDAPSLVYFYYCD 240
Query: 211 PLPLIRPEYHF-NLSDAMLDFRL 232
L P+ + NL +A ++ L
Sbjct: 241 SLAEDYPQVNLKNLVEAQINLLL 263
>AT3G58900.1 | Symbols: | F-box/RNI-like superfamily protein |
chr3:21773030-21774013 FORWARD LENGTH=327
Length = 327
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 109/263 (41%), Gaps = 39/263 (14%)
Query: 8 DLFSNLPNEILRHIVSFLPNESAIETIFLSTRWRNL--------WNEALVRHG-----TK 54
DLFS+LPNE+L HI+SFL + A T LS RWRNL +++++ H K
Sbjct: 2 DLFSSLPNELLYHILSFLSTKEAALTSVLSKRWRNLFAFVPYLEFDDSVFLHPEERKREK 61
Query: 55 ENITQVVAGFLQRFEEL--DPLKHPRKLQFHFGEGRI--------VMATIANNSKLFLDF 104
E I Q F+ R +L D L L+ G V+A ++ LF+DF
Sbjct: 62 EGILQSFMDFVDRVLDLHGDSLIKTFSLKCKTGVDSDHVDRWICNVLARGVSDLDLFIDF 121
Query: 105 STW---------KKELIEIQYELQFKLSKMQSFTSNISVKTLYLKSISYLTSGVASTIIS 155
+ L+ ++ + L Q F +KTL L S +L G ++
Sbjct: 122 RDLYSLPHEVGVSRTLVVLRVGSESDLYWWQKFLCLPMLKTLVLDS-CWLCIGQFQILLL 180
Query: 156 NLEHLENLVIIECSGLQSLSIDSASELQKLTI-----WDCLQLKSLHLRTSKLKSFQISG 210
LE L + S S+S L++LTI + LKSL L F
Sbjct: 181 ACPALEELDMTNTRWKDSNVTVSSSILKELTIDLHGCCSVVNLKSLSFDAPSLVYFYYCD 240
Query: 211 PLPLIRPEYHF-NLSDAMLDFRL 232
L P+ + NL +A ++ L
Sbjct: 241 SLAEDYPQVNLKNLVEAQINLLL 263