Miyakogusa Predicted Gene

Lj1g3v3205720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3205720.1 Non Chatacterized Hit- tr|I1N531|I1N531_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,81.48,4e-18,
,64027_g.1
         (57 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39490.1 | Symbols:  | F-box family protein | chr2:16487151-1...    60   3e-10

>AT2G39490.1 | Symbols:  | F-box family protein |
           chr2:16487151-16488464 REVERSE LENGTH=387
          Length = 387

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 41/53 (77%)

Query: 5   QELIWPSVSPIAGSFKFYKLRELWWIDSYKDEYNMDALFCFLKLCPALEQLFV 57
           +E+I PS+S    SF+FYKL+EL WID+  ++  +++L  FLKLCP++E+LF+
Sbjct: 270 EEVIKPSISSSWRSFQFYKLQELRWIDNSMNQEQINSLISFLKLCPSIERLFI 322