Miyakogusa Predicted Gene

Lj1g3v3194570.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3194570.2 Non Chatacterized Hit- tr|Q015D3|Q015D3_OSTTA
Uncharacterized protein OS=Ostreococcus tauri
GN=Ot07g,47.31,2e-19,FAMILY NOT NAMED,NULL; no description,Mog1/PsbP,
alpha/beta/alpha sandwich; PsbP,Photosystem II PsbP,CUFF.30182.2
         (128 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55330.1 | Symbols: PPL1 | PsbP-like protein 1 | chr3:2051403...   157   3e-39
AT2G39470.1 | Symbols: PPL2 | PsbP-like protein 2 | chr2:1647633...    90   4e-19
AT2G39470.2 | Symbols: PPL2 | PsbP-like protein 2 | chr2:1647633...    90   4e-19
AT3G05410.2 | Symbols:  | Photosystem II reaction center PsbP fa...    54   3e-08
AT5G11450.1 | Symbols:  | Mog1/PsbP/DUF1795-like photosystem II ...    51   2e-07

>AT3G55330.1 | Symbols: PPL1 | PsbP-like protein 1 |
           chr3:20514031-20515275 REVERSE LENGTH=230
          Length = 230

 Score =  157 bits (396), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 84/96 (87%)

Query: 31  KACGPPQQVGETLIKRVLAPPNQKTKIIEATEQDVDGKTYYRFEFIAKAPNYTRHALSTV 90
           K  GPP+Q+ ETLIK+VLAPPNQKT +I+A+E DVDGKTYY+FEF  +A NYTRHAL T+
Sbjct: 134 KEFGPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTI 193

Query: 91  SVSNGKFYTLTTGANERRWDKMKERLQTVIESFKIS 126
           +V NG FYTLTTGANERRW+KMK+RL TV++SFKI+
Sbjct: 194 TVFNGNFYTLTTGANERRWEKMKDRLHTVVDSFKIT 229


>AT2G39470.1 | Symbols: PPL2 | PsbP-like protein 2 |
           chr2:16476335-16477653 FORWARD LENGTH=238
          Length = 238

 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 64/111 (57%)

Query: 18  VKIRCSKMSLNRWKACGPPQQVGETLIKRVLAPPNQKTKIIEATEQDVDGKTYYRFEFIA 77
           V++R      N     GP ++V   L+K   A PNQ   I +  E+  DGK YY FE+  
Sbjct: 128 VRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYTFEYGL 187

Query: 78  KAPNYTRHALSTVSVSNGKFYTLTTGANERRWDKMKERLQTVIESFKISNV 128
           + P Y   + +TV+V N ++YTL  GANERRW K+K++LQ V +S KI  +
Sbjct: 188 RTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238


>AT2G39470.2 | Symbols: PPL2 | PsbP-like protein 2 |
           chr2:16476335-16477653 FORWARD LENGTH=230
          Length = 230

 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 64/111 (57%)

Query: 18  VKIRCSKMSLNRWKACGPPQQVGETLIKRVLAPPNQKTKIIEATEQDVDGKTYYRFEFIA 77
           V++R      N     GP ++V   L+K   A PNQ   I +  E+  DGK YY FE+  
Sbjct: 120 VRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYTFEYGL 179

Query: 78  KAPNYTRHALSTVSVSNGKFYTLTTGANERRWDKMKERLQTVIESFKISNV 128
           + P Y   + +TV+V N ++YTL  GANERRW K+K++LQ V +S KI  +
Sbjct: 180 RTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 230


>AT3G05410.2 | Symbols:  | Photosystem II reaction center PsbP
           family protein | chr3:1554783-1561456 FORWARD LENGTH=280
          Length = 280

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 6/121 (4%)

Query: 11  GRKYRLRVKIRCSKMSLN-RWKACGPPQQVGETLIKRVLAP---PNQKTKIIEAT-EQDV 65
           G    L V +  S +S +   +A G P++VGE +++ V       + K  ++E++  QD 
Sbjct: 158 GSTGELNVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVTGSGQRADLKGTLLESSIRQDS 217

Query: 66  D-GKTYYRFEFIAKAPNYTRHALSTVSVSNGKFYTLTTGANERRWDKMKERLQTVIESFK 124
           +    YY  EF  ++P + RH ++     +G+ YTL   A E  W ++K  + T  +SF 
Sbjct: 218 ERNLKYYELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQAPESAWSEVKSEIYTTAKSFN 277

Query: 125 I 125
           I
Sbjct: 278 I 278


>AT5G11450.1 | Symbols:  | Mog1/PsbP/DUF1795-like photosystem II
           reaction center PsbP family protein |
           chr5:3654475-3656357 FORWARD LENGTH=297
          Length = 297

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 8/81 (9%)

Query: 53  QKTKIIEATEQDVDGKTYYRFEF--------IAKAPNYTRHALSTVSVSNGKFYTLTTGA 104
           +++ +++A   D+DG+ Y+ +E+        IA+A    RH +S+ +  +G  YT+    
Sbjct: 199 EESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYRHYISSTAERDGYLYTINAST 258

Query: 105 NERRWDKMKERLQTVIESFKI 125
             ++WDKM   L+  + SF++
Sbjct: 259 LGKQWDKMGPVLERAVGSFRL 279