Miyakogusa Predicted Gene

Lj1g3v3194570.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3194570.1 tr|Q6ZDL1|Q6ZDL1_ORYSJ Oxygen evolving complex
protein-like OS=Oryza sativa subsp. japonica
GN=P0404,60.53,2e-19,PsbP,Photosystem II PsbP, oxygen evolving
complex; no description,Mog1/PsbP, alpha/beta/alpha
sandwi,CUFF.30182.1
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55330.1 | Symbols: PPL1 | PsbP-like protein 1 | chr3:2051403...   119   7e-28

>AT3G55330.1 | Symbols: PPL1 | PsbP-like protein 1 |
           chr3:20514031-20515275 REVERSE LENGTH=230
          Length = 230

 Score =  119 bits (298), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 79/119 (66%), Gaps = 2/119 (1%)

Query: 15  REGISFTVKAAHEPSASSAGFLSQDRPGRREVIAIGTTAPLVFLFSQNSSSFAAENKKGF 74
           ++G+SF VKA  E  +SS+    QD+  RR ++  G  AP + L S+   SFAAE+KKGF
Sbjct: 24  KKGLSFLVKA--EHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGF 81

Query: 75  LPVTDQKDGYTFIYPFGWQEVSIEGQDKVFKDVIEPLESVWASSTGWRNSDKKGFGPSK 133
           L V+D KD Y F+YPFGWQEV IEGQDKV+KDVIEPLESV  +         K FGP K
Sbjct: 82  LAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPK 140