Miyakogusa Predicted Gene

Lj1g3v3170080.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3170080.1 Non Chatacterized Hit- tr|I3SB83|I3SB83_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.49,0,seg,NULL;
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H,NULL; EUKARYOTIC
TRANSLATION INITIATI,CUFF.30143.1
         (333 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10840.1 | Symbols: TIF3H1 | translation initiation factor 3 ...   555   e-158
AT1G10840.2 | Symbols: TIF3H1 | translation initiation factor 3 ...   412   e-115
AT5G23540.1 | Symbols:  | Mov34/MPN/PAD-1 family protein | chr5:...    52   6e-07
AT5G05780.2 | Symbols: RPN8A | RP non-ATPase subunit 8A | chr5:1...    50   2e-06
AT5G05780.1 | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase subu...    50   2e-06

>AT1G10840.1 | Symbols: TIF3H1 | translation initiation factor 3
           subunit H1 | chr1:3607885-3610299 REVERSE LENGTH=337
          Length = 337

 Score =  555 bits (1431), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 263/332 (79%), Positives = 294/332 (88%), Gaps = 1/332 (0%)

Query: 3   TTTARSFLQ-VAATEEVAPPLRVVQMEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLE 61
            T ARSFLQ ++  E VAPPLRVVQ+EGL +LKIIKHCK+ SP+LVTGQLLGLDVGSVLE
Sbjct: 2   ATMARSFLQAISKDEAVAPPLRVVQIEGLAVLKIIKHCKEFSPTLVTGQLLGLDVGSVLE 61

Query: 62  VTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIET 121
           VTNCFPFP+R++DEEIEADGANYQLEMMRCLREVNVDNNTVGWYQST+LGS+QTVELIET
Sbjct: 62  VTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTVLGSYQTVELIET 121

Query: 122 FMNYQENIRRCVCIVYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVD 181
           FMNYQENI+RCVCI+YDPS++D GVLALKALKLSDSFMELYR  NFTGEKLREKN SW+D
Sbjct: 122 FMNYQENIKRCVCIIYDPSKADLGVLALKALKLSDSFMELYRGGNFTGEKLREKNFSWMD 181

Query: 182 IFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLLERNTEYLIECMDDLSL 241
           IFEEIPIKVSNSAL+SAFMTELE DTPV+Q DYDRL  ST+  LE N E+LI+CMDDLS+
Sbjct: 182 IFEEIPIKVSNSALVSAFMTELETDTPVSQGDYDRLHSSTTPFLENNMEFLIKCMDDLSM 241

Query: 242 EQQKFQFHYXXXXXXXXXXXXXXXKRRTENMARKAAGEEPLPEEDPSNPIFKPLPEPSRL 301
           EQQKFQ++Y               KRRTENMARK+AGEEPLPEEDPSNPIFK +PEPSRL
Sbjct: 242 EQQKFQYYYRNLSRQQAQQQAWLQKRRTENMARKSAGEEPLPEEDPSNPIFKAIPEPSRL 301

Query: 302 ESFLITNQISNYCNQINGVSGQSFNRLYLMKA 333
           ESFLITNQ+SN+C QINGV+GQ+F+RLYL KA
Sbjct: 302 ESFLITNQVSNFCGQINGVAGQNFSRLYLTKA 333


>AT1G10840.2 | Symbols: TIF3H1 | translation initiation factor 3
           subunit H1 | chr1:3607885-3609657 REVERSE LENGTH=250
          Length = 250

 Score =  412 bits (1060), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/246 (78%), Positives = 216/246 (87%)

Query: 88  MMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIVYDPSRSDQGVL 147
           MMRCLREVNVDNNTVGWYQST+LGS+QTVELIETFMNYQENI+RCVCI+YDPS++D GVL
Sbjct: 1   MMRCLREVNVDNNTVGWYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGVL 60

Query: 148 ALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDT 207
           ALKALKLSDSFMELYR  NFTGEKLREKN SW+DIFEEIPIKVSNSAL+SAFMTELE DT
Sbjct: 61  ALKALKLSDSFMELYRGGNFTGEKLREKNFSWMDIFEEIPIKVSNSALVSAFMTELETDT 120

Query: 208 PVTQCDYDRLQLSTSSLLERNTEYLIECMDDLSLEQQKFQFHYXXXXXXXXXXXXXXXKR 267
           PV+Q DYDRL  ST+  LE N E+LI+CMDDLS+EQQKFQ++Y               KR
Sbjct: 121 PVSQGDYDRLHSSTTPFLENNMEFLIKCMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKR 180

Query: 268 RTENMARKAAGEEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNR 327
           RTENMARK+AGEEPLPEEDPSNPIFK +PEPSRLESFLITNQ+SN+C QINGV+GQ+F+R
Sbjct: 181 RTENMARKSAGEEPLPEEDPSNPIFKAIPEPSRLESFLITNQVSNFCGQINGVAGQNFSR 240

Query: 328 LYLMKA 333
           LYL KA
Sbjct: 241 LYLTKA 246


>AT5G23540.1 | Symbols:  | Mov34/MPN/PAD-1 family protein |
           chr5:7937772-7939339 FORWARD LENGTH=308
          Length = 308

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 25  VQMEGLVILKIIKHCKDHSPSLVTGQLLGLDVGS-VLEVTNCFPFPMREEDEEIEADGAN 83
           V +  L +LK++KH +   P  V G +LG  V    + V + F  P       +EA    
Sbjct: 30  VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV 89

Query: 84  YQLEMMRCLREVNVDNNTVGWYQST-LLGSFQTVELIETFMNYQENIRRCVCIVYDPSRS 142
           +Q  M+  L++       VGWY S    G + +   I T  +++   +R V +V DP +S
Sbjct: 90  FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQS 149

Query: 143 DQGVLALKALK 153
            +G + + A +
Sbjct: 150 VKGKVVIDAFR 160


>AT5G05780.2 | Symbols: RPN8A | RP non-ATPase subunit 8A |
           chr5:1735862-1738176 FORWARD LENGTH=305
          Length = 305

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 10  LQVAATEEV-APPLRVVQMEGLVILKIIKH----CKDHSPSLVTGQLLGLDVGSVLEVTN 64
           + V  T+++ A  +  V +  LV+L I+ H     KD S  +V G LLG     V++VTN
Sbjct: 1   MDVIKTQQISARTIEKVVVHPLVLLSIVDHYNRVAKDSSKRVV-GVLLGSSSRGVVDVTN 59

Query: 65  CFPFPMREEDEE--IEADGANYQLEMMRCLREVNVDNNTVGWYQS 107
            +  P  E+D++  I     NY   M    + +N   + VGWY +
Sbjct: 60  SYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYST 104


>AT5G05780.1 | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase subunit
           8A | chr5:1735862-1738176 FORWARD LENGTH=308
          Length = 308

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 10  LQVAATEEV-APPLRVVQMEGLVILKIIKH----CKDHSPSLVTGQLLGLDVGSVLEVTN 64
           + V  T+++ A  +  V +  LV+L I+ H     KD S  +V G LLG     V++VTN
Sbjct: 1   MDVIKTQQISARTIEKVVVHPLVLLSIVDHYNRVAKDSSKRVV-GVLLGSSSRGVVDVTN 59

Query: 65  CFPFPMREEDEE--IEADGANYQLEMMRCLREVNVDNNTVGWYQS 107
            +  P  E+D++  I     NY   M    + +N   + VGWY +
Sbjct: 60  SYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYST 104